TCONS_00016257 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016257
Unique NameTCONS_00016257
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2553

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016257 ID=TCONS_00016257|Name=TCONS_00016257|organism=Clytia hemisphaerica|type=transcript|length=2553bp
TGAATTTCATCTCAATTTTGTTTGACACCAGATAGGTCCCAAAAATATTC
TCCTGCTTATGTTTTTAATTACAGGATTCttgattttaataaaaaagaaa
catggGTCGTAAATCCTGGGGagaattaaaagaaagaaagaagggACCTG
GTCGCAAAGCAAGAAAACAAGAACATCCAGAAGAAAATTTACCATTTCAT
TTGTtaaATGAAGAACAACAGaagaatattttgaagaaacgaaaaaagga
caaaaaGAAAGTCAAAGAAGAAAAGatagaaaagaaaattgagtctAAGG
AGGAAAATCAAATTGTCGATTTCACAGCAAATAAAGATGTCAAACCCAAA
AAGCTTACAAAGTGGGAAAAAAAGAAAGCCAAAAAGTTACAAGCAAAGAA
AGAGACAACTATCTTTGATTCAGACAGTGAAAATGATtatgatgaagaag
aagataatGAAGGAGACAAAGAAACCTCTGAATCTGAAGAAGATGAGGGA
ATTCAAGATGAGaataaagaatggctgaagctGAAGAAAGATGGTGGAGA
acgtgaagaagaagaagaaagtgaagaagaagaagacgaGGAAAGTGGAG
AGGAGGAAGAGAGTGATGTTGAAATGCCTGACGACGAATTTGACAtggat
gaagatgaagatgaaagcGACGATGATGAGGATGAGGAGGGGGATGAAGG
AAGCGGTGAAGAAGATGAATTGCCTTTTGAGAAGAAAGCTAAAAAGCTGA
AAGCtgctcaaaagaagaaaaaGGAATTGGCAGAAGAAGAACTTAAAACG
AACATCGCACAGTCCGAAGTTTTCGTTCTCCCAAGTGGACAAGAAATAGA
GAAAGAAGGTATCGACCCTCCAGATTTATCAATGGTTCACCAGAGGATTA
AAGACAACCTACACGCTTTGAGTGATTTCAAAAAGAATAGACAAGAGGGC
AGGAGCCGTCATGAATATCTTCAAGTATTGGTCAAGGACTTGATGAAGTA
TTACAGTTACAATGAATATTTCATGGAATACCTTGTCAACCTTTTTCCCG
GAGGCGAGATCTTGGAGTTCTTGGAGGCTTGCGAAGTTCGAAGGCCCATC
ACAATCCGATCAAACTCTTTAAAAACCAGAAGAAGAGATTTAGCACAATC
TTTGATCAACAGAGGAGTTAATCTTGATCCCATTGGAAAATGGTCCAAAG
TTGGTCTGGTTGTTTACGACTCATCTGTACCCATTGGTGCTACTCCTGAA
TATCTTTCTGGTCATTACATGTTGCAAGGTGCATCTTCAATGTTGCCAGT
GATGGCATTAGCACCTCAAGAACATGAGAAAATTATGGATATGTGTGCAG
CTCCTGGTGGAAAAACCACTTACATTGGTGCGCTGATGAAGAACACAGGG
ATGCTTGTTGCAAACGATGCCAAAGAAGAACGTCTAAAATCACTCACCGC
CAATGCTCACAGGATGGGCATCAACAATCTTATTGTGTGTAATTATGATG
GTCGATCCTTTCCTAAAGTGATGGGTGGTTTCGACCGCATTTTGTTGGAT
GCACCTTGCAGTGGGACTGGCGTCATTTCTAAAGACGAACAAGTCAAAAT
AAATAAGTCTGAGAAAGACATTATGCGGTGCTCACACATCCAAAAAGAAT
TGATTTTGGCGGCTATCGATTCTGTGGATGCGAAATCAAAGACTGGTGGA
TATGTTGTTTATTCAACTTGTTCCATTATGGTTGAAGAGAATGAATGGGT
GGTAGATTACGCTTTGGCTCAGCGAAATGTCAAATTGGTGCCAACCGGTA
TCGACTTTGGTAAAGAGGGATACACAAAATACAAAGACCGTCGTTTCCAT
CCGTCGCTAAACTTGACAAGACGTTTTTATCCTCACACACAAAATATGGA
CGGTTTTTTcgttgccaaatttaaaaagtttgccAACATTATTCCGAAGA
ATCAAAAACCAGAGGAGGAGGTAGAAGAGGTAGGAGCTGAAGAAACTTCA
GAGAACGAAGATGAAACAGAAGAAACATCAGAACAAGCAGAAGAGATGGA
AAGTGAAGATGTTCCAGAGAAGAAGGAAGACActccaaaacaaaaagaag
ataCTCCAAAGCAAAAGAAGACGAATAAAAAGCGTAAAAACACAGATACA
AAACCAAAGGAATCCACTGACGAGAAAAGCcccaaaaagaaacaaaagaa
aatgccaaagaaagaaaatagtcagaataaaacgaaaaaagaaaagactG
TTGAAAAAGTTGATAACAACGAAGCTGATGAAAATACGACAGAATCGCAA
GATAAGAATGAGGAGACACAATCCAAAGAAGTTGATACACAATCAAAAGA
AGTCAGTACACAATCACCAAAAACCACCAAGaaaacaaacaagaaaaaga
tcaacaaaaccaaaaaatcacccaataaaaagaagaaaaagccaGCAGCA
CAAACctaaaacattcttcatattgagcttgtatttttatataattttat
caagaaaaatattgatttttggtgGTCCTTTGGGGTATATACACTTGACT
GTT
Run BLAST on NCBI

transcript from alignment at sc0000232:324372..335396+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016257 ID=TCONS_00016257|Name=TCONS_00016257|organism=Clytia hemisphaerica|type=transcript|length=11025bp|location=Sequence derived from alignment at sc0000232:324372..335396+ (Clytia hemisphaerica)
TGAATTTCATCTCAATTTTGTTTGACACCAGATAGGTCCCAAAAATATTC
TCCTGCTTATGTTTTTAATTACAGGATTCttgattttaataaaaaagaaa
catggGTCGTAAATCCTGGGGagaattaaaagaaagaaagaagggACCTG
GTCGCAAAGCAAGAAAACAAGAACATCCAGAAGAAAATTTACCATTTCAT
TTGTGTGAGTAATATTAGATATGATTTTTGATTGGcttttttgtatgttt
tagTTACACATATACACACAATACATCAAACttattactttaatgggata
aaatttcgcaggTATTAAATTTCCCGGATTTGGATGTCATCCACAaaaat
ctgcgaaattaagtcccaatgaaAATTTGGAAGGGCAAGGCttgaaataa
cgatttcaagtgggtcagacaaaatgtccgatcaggcttgctttagcttg
aaaattatgatttttgggtcggacatgaagctatttgggttggacaatgt
ccgatgtccgatcgttatttcaagccctggaagggcctcatccgcaaaat
taagtaccCGAAATCTCTTCGTTATTTCTCGAATTTTTGCACACtaacat
atcaaaattttgagagaaGTTCTGTTTGCTACCccgattttgcaaaattt
ggaatcactttagaaaaattagattgaATCTTGATCCGCAAAATTACGCA
AAAAATCAGGGAACTCCTCATCCacaaaattaagtccccgcaaaattttt
gaatttcacggatccgtgaaatttaatccctgcgaaagtttatcccagtA
AAGTATACATTTATACATTACTTATTATCAGAGATGAAGCCAGTGTATAT
ATAATACTGCAAATGCAATGCAAAATGTTCACTTGCTCCATCAATAATAA
ACcctatttgttttgatttattttcaacaCTCTGAAGCATTCTGAATTGT
CTATCTAGATTGCCTATGCAATTTGACAAAGAGgacatttttttattcta
taCAATCAACTGACATAACACCCATTCATTTTAACAACTGCAATGTCTTC
ACAAGCTCAGCATTTTTTCAGAGCAATTCAGACCTCTCAATCCAAGCAAA
GTACATatcactttttggacctaccccggtggaggtcctataaattaacc
tctgttcgtccgtttgTCTGTTAGTTCTTCCGTTAGTTCGtgaccaactt
ttctcgagattggctcattagtttttcctgatttttggcacaatgatgca
aaatggtgatgcCCAAAATTTGatggagctcgattttcgaaaaaaaatat
atttgggcaaatttgggccaaaaactgcctaaaaatagggttttttggac
tttgtgcaaaatcctgtcattacttttttctgattttttgtacaaagatg
gagggcaaaattgtctaaagaatggctgaagtgatttttcccggaaaatt
cttattcgccttaaaaaacagattttcgtattttggggaaattcccttta
accaaataagaaaatatagcttttcNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgaagcctg
attttcaaaaaacatttttttccggccgaaaatgctggaaatgccggaaa
aactggttttttggcattttctcaagatgttttcattggtttttcatttg
attttttgctcaaagatgtgcATTAACAATGCcctaaacatggccgagtt
cgatttttgagaaaaaacttttttcattggattttttccttatattcatt
tctatgttttttacacaaaaacattattgataacaatgctcaccatcaag
catgattcaattgtcaataaaacNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNattttctgactgatttttttt
catttttctcctcgcattgctatctaactttcatcatcatgtaggtccat
tcagcatctaggtTGTTCCTATTGGTCTCATCATAAAGATGCTTTTAATC
AGTTATTtgtcactttttcttttttcagtaaATGAAGAACAACAGaagaa
tattttgaagaaacgaaaaaaggacaaaaagtagctaataaatatttcct
ttgttttcaagatattactttctcaaaaaagggCTAAAAGCAATCTCTTT
TTGGATGCGTTATTGTGTTTAGCACTAAATGTCTTTATAATATGTTCTGA
AATATGAATGACTCTTGATATCTTAAGATATGGTGTGCCAAAGGAAAGTG
AGTGCATTATCgaatgtttttcaaattttattaataGTCTTTTAAGGAAG
AAATTGCTTGATGCTTACTTTTAGAATAGAATTGGAAATCATGTCATCTT
AGATGAACTtatcaaatttcatgtttataaaAGGACTAATTACTCCTTTa
caggaaaatattttaaaaaatgtaaaaaagctaATCAGCTTTATTGTTTT
CTGTAGGAAAGTCAAAGAAGAAAAGatagaaaagaaaattgagtctAAGG
GTAAGTCATGTTAAAAGTAATACGTGTTTTGCCAAGCAATTTTTCCATAC
TACAAAAAACACACATTGTAACTTTTCAGATTGGCTAGCTTAAAGGATGA
AATTTTGTGGGAATTAAATTTTGTGGATGGTCAAATAAGTTTCCCTGAGG
TATGATTTGGCAGATggctgaaaaaataaatttgatgtGAGTTTGACTTG
GCGGTTGTGGATGTTTTTGTCCAAAAATTGTTAacaaataagcaaaaagc
tctttttaaggcctgaaaaaGCACAAAATTTGATAATGTATGATAATTAT
GAATTCAATTTGGTAAATGAcgcaaaaaaacaaattttggcaGGAGTTCA
TTAAGCAGATTCCTGGTGAAATCTATCAAATCTggcaaattttctttctt
aaaatttcttttttatggaatttctaTTTTGCACTGGTTTGAACCTGTCT
AGAGGTCTGTACCaatcatgaaaaaaaagttcttgaGAGCTGACCAACTT
AAGAgtcattttttctaaaagtcttcagggtgtgatacctcaccctcttg
gattttgctgaaatttggaccaaatgtTCACACAAGgaaataagaccctg
aaaatttcaccttgatatctcgaGTAGTTTTGAGGATACAGTGTCTCAAA
GATAGgatactaagcgaaaattgacccctaaaaatcatgaactctggtgg
ggagcagatttctTTCagatttgaaagccaatgaattttcactcaggtac
attagaaagctgatttacagtggatttcaagaactttttgtagggagtca
gaaaaaatcaaattgagtctccaaaattttccccgaaagtctctagcacc
tcctgtagagggcttcaaactttccGTAATCttggtttggaagcactttt
agctgtctcCTGATGGTCCTTGTGACTTTTTGAAAGCAAATTTTTGAcat
ggagtggtttactggagggttttggccacaaaaataacattttcaggatt
tctatttttgcgtaaccgtcaaaaatggccgaaaaaattgctattatggc
agatctggagcaaaattcaagatggcgtatctttttgaaCCGACaacact
tttttttgaaactttcagctaggcttccttagtaggtctagtttatagcc
tcGAAAAATCTCAGTGGGGGTTTGAAGTCTCTTGAAGATAtgattgattg
aaaattttgcttaacttcgttgttttttccTCTTTAAATGCTAAATCAGG
TCCACTTGGGGGGCTCTAAAGGTTAATTCTTGTCAAATTATTGGTTGATA
TTCTCTAGgcaactaatcattggcattaagggaacaactgcaaaagattt
caggtcatttccatcaacagatgacattttatggcagtttctttattttt
aagtacagaatatgtaaaaatATGAGACTGGCATCTGGtctttcctacca
ttccagggcctatattttcaggaaaagcctcaaccttttacagtttggtg
aatattcATCTTAAATATAAACAGCTTACTTCAACTAAATGGATTTAACA
GTACTTAAATCTTatctaaaaacttttttgactcattcgaaaatcctact
ttgacaataatttgcgctttaccgcaaaacttctaagtTTAAGTGTTGTG
ATTAGCttctgttgatggaaatgacctgaagtCTTTTGCGTTGTTCCCTT
AATACCAATGATAAGTTGGCTAGAGAATATCAACCATTATTTTGACAAGA
ATTAACCTTTAGAGCCCCCCAAGTGGACCTGATTTAAAGCTTTAAAAACC
AATGCAAGCCGAATTTTAACAATCTCCATCAGTTTAGCAACAAATAAAAC
TAGGTTGAGGAGCAAATAGCTCACTTATAACTAACCTTTCACAAAGCATT
CTAATCACATCTCAAtgtttgaatttaaaaattcaCAACATGCGAAATAC
TGTGGAATGTTGTGACTTGATGTCAAAACAAAATTCCAAACTGAGGTTAG
ATGAGTGAAAGACAAGGAGAAGGAGGATGATAATGGATTGCGCCTTCTTT
GGGTTATGGAGGGATTACATTATTTAAAGGTTTAATTTATACATGTGTAA
TTTGAGATTGCAATGAAAGGAAAGTAAAATTGATACATTGGGAATGCTAG
TTCCAAGGAGtttgcaaatatttttatttttaaagcaCTTAAACTGCCAG
CAACCAATTTTATTTGCAAAACCGGCATTCTTTACCTCAAACTGGTAGCA
ATCATTTCTCATGCTAAACAATCTATTGAGACTTGACTGCTTGGAAACCA
ATTAAGATGGGTTTTTTAAACTGATagcaaaaacaatcaaaattggTGTT
ATGGAAATTACTTGGCAAGACACAGTTTCACTATAGTAACATTAATGTAG
TATCATTTACTACTTTTTCATTTACTTTTCCATAGGCAGTTTTTTAAGTT
TTCCTAAAACAAGGTGTTGCTCAAAATTTCCATCCAAAGTCAACAGAATC
ACATCATTATTAAATTTTGTATTTCAGAGGAAAATCAAATTGTCGATTTC
ACAGCAAATAAAGATGTCAAACCCAAAAAGGTAACAATTGGTTGCTTTTG
TTTTTATGGTATTTATTGTGCACATATTATTTTTATCATGTATGCCCTGA
ACAATTTCGACTCTTGGATTTTACTAAAGCCTTTGACCTNTTGTATGCCC
TGAACAATTTTGCCTCTGAATTTTACTAAAGCCTTTGACCTGTCTGTCTT
ACCTTTTCAGCTTACAAAGTGGGAAAAAAAGAAAGCCAAAAAGTAAGTAT
TCTAAGATGTAGCTGAAGATTATTTTATTCCTACCTCCTTTATTTTTACT
ATTAAGTTTCGTTCTAACATAGCGTCAACCCCCCTGAATTGGGGGTTACa
ccaaaaaaatgcaaatgaaAACTGTGAGCTAAAATACAGCCatatatttg
gggggacctgaTATGTTTTCGGGGCCCAGAATTTCctatttttttgcctt
tttatcaataaaattttattattccaTTCAAGGTTACAAGCAAAGAAAGA
GACAACTATCTTTGATTCAGACAGTGAAAATGATtatgatgaagaagaag
ataatGGTATTTcacttcaattttctttaataCACAGCTAAGAAACCCTT
AAGTAATAATGACTGCTTTATTCTGGCAGGCATTCAATTGATCTTAATGG
TTGTTTCTTATATTTAGAAGGAGACAAAGAAACCTCTGAATCTGAAGAAG
ATGAGTAAGTTGAAAGTTTCCTTTTTCATTCCAAGATACCTTTAATTTTA
ACCAATGTTAAACACACTGAAAAGACGTTTTCAAAAAGCTTGTGTGATGG
ACTTGCTACTTTCAGNATTTGGCAAACACACTGAAAAGACGCTTGTGTGA
TGGACTTGCTACTTTCAGTCATGATATCTCTTATTGTAATTTTCACCTAA
TTTCAGGGGAATTCAAGATGAGaataaagaatggctgaagctGAAGAAAG
ATGGTGGAGAacgtgaagaagaagaagaaagtgaagaagaagaagacgaG
GAAAGTGGAGAGGAGGAAGAGAGTGATGTTGAAATGGTTTGTAGtttgtt
tttcagaaaatattcAGTATTTCTCCTTTCATTAAAACTCATCATGGTTC
TGCATTCATAAAAGTTTCAGAAATGTAaatgaaaactcaaaatttttgaa
agatagtTCTCATAACAATCCCTCTTTATTTTCAGCCTGACGACGAATTT
GACAtggatgaagatgaagatgaaagcGACGATGATGAGGATGAGGAGGG
GGATGAAGGAAGCGGTGAAGAAGATGAATTGCCTTTTGAGAAGAAAGCTA
AAAAGCTGAAAGCtgctcaaaagaagaaaaagtaacaactaagaaataaa
ataaaataacttgattttttatcaCTGAAAAATAAGTAGTTGAGTCAAAT
TTAAATACTGCTCCTTGGTGGAgactcaaaatttaaagtttgaagtatga
gtttgaaaaattttaaggtTAATTTTTTTGGTTTAAAGTAGTATAGGAAG
ATTGAAAAGTAGAAGTTCGATTTAACAAGGGTCCATTGTAGTTTAGACAC
TTAACTTTAActttgattcaaaattaaattaGCTAGGGCAGAAAGATGGT
ATTCCAAACTACGAGTTGCTGATTAGGTTTTCTTCATGTCGAAACAACAA
TGTATTTGTACTTAAAACACTTCCTGGGTTGATCAATAATTCTTTGTTTA
TTCTCAGGGAATTGGCAGAAGAAGAACTTAAAACGAACATCGCACAGTCC
GAAGTTTTCGTTCTCCCAAGTGGACAAGAAATAGAGAAAGAAGATATCCT
TTTCAAAATACATTTTATTGAATTGCAACAGCCATAAAAGATTTTAACTT
TAAATGACACAGTTTGTAGAAACACTGATCCCAACTTAAATGACAAATGC
CACCTTTATTCTCGGTTTAATGCACTTTCTTGACTGTATGATAACATCcg
attttaaattttagtaaTTGTTTTTTCCTTAACTTTGATGTGCACGTATC
GACCCTCCAGATTTATCAATGGTTCACCAGAGGATTAAAGACAACCTACA
CGCTTTGAGTGATTTCAAAAAGAATAGACAAGAGGGCAGGTGAGATTGAG
TGAAAATGTTTATTACTGTTATGATTATTGTCGTCCCTGATATGGTACAT
TCTGAAAAGTTGTGGATTAgaaccaaaatttgaaatgatatgGGTGCTTA
AGCAGATGCTTTACATGTGTTGAATCAGGATGTTGCTAAGCTCTCTACCC
ACTGGCAGAGTAAAGTTAGCGAGATTTATTGATCTCCTATATTGTCATTG
ATACAAAATTAACTtgacaatttcaattttggttttaatttcagatttca
tatattttaagaaaatttgataTGATTTTTTCTCGTTAGGAGCCGTCATG
AATATCTTCAAGTATTGGTCAAGGACTTGATGAAGTATTACAGTTACAAT
GAATATTTCATGGAATACCTTGTCAACCTTTTTCCCGGAGGCGAGGTATA
ATTTCCACTAGACTTAGAAATCACATCATATGAAGGTTTAGCCAGGCAAC
AATACCTTCTTTTAAATAGCCTTTATCAGGTttagtttcaattttttgta
aacgtttttttattttctccatCTCCTTTTCTATATTGTTTACAACTAGA
TCTTGGAGTTCTTGGAGGCTTGCGAAGTTCGAAGGCCCATCACAATCCGA
TCAAACTCTTTAAAAACCAGAAGAAGAGATTTAGCACAATCTTTGATCAA
CAGAGGAGTTAATCTTGATCCCATTGGAAAATGGTCCAAAGTTGGTCTGG
TTGTTTACGACTCATCTGTACCCATTGGTGCTACTCCTGAATATCTTTCT
GGTCATTACATGTTGCAAGGTGCATCTTCAATGTTGCCAGTGATGGCATT
AGCACCTCAAGAACATGAGAAAATTATGGATATGTGTGCAGCTCCTGGTG
GAAAAACCACTTACATTGGTTAGTTACAGTTCAGTTTTTTCactttatta
aaattttctctTACAACGAGAACCTCAATTTAAGATGATTTGTTGCAATG
ATGGAAGCAatcattttagaaaatattgtATTGCTCCAAATCCTCCTCGT
AACCATTTTGTCATGTTATTTCAGTTCCAGTTCAGTTTTTCACTTTAACC
TGCTTTAACAGACCCACAATGAGAAACTCAATTTAAGATGATTTGTTGCA
ATGATGGAAAAAATCCTTTTAGAGTTTTATTGTTCCAAATCCTCCTTTTA
ACAAtgttttcatgttatttttttcttacagGTGCGCTGATGAAGAACAC
AGGGATGCTTGTTGCAAACGATGCCAAAGAAGAACGTCTAAAATCACTCA
CCGCCAATGCTCACAGGATGGGCATCAACAATCTTATTGTGTGTAATTAT
GATGGTCGATCCTTTCCTAAAGTGATGGGTGGTTTCGACCGCATTTTGTT
GGATGCACCTTGCAGTGGGACTGGCGTCATTTCTAAAGACGAACAAGTCA
AAATAAATAAGGTATTGGAAATCTTATTGTTGGACCTACcacggaggtcc
tttaaattaaccgatTCGTTCGTGTGTTGGtgtgtccgttcgtctgttac
cagctttgcTCGGGATtgcttattagttttttctgattttttttttcaca
gtgatgcaaaatggtgattcccAAAAAGTGACTTAGCTGGActgagccca
attttcgaaaaaaagtctTTGGGCAAATTTCGGctaaaaagtgcctaaaa
attgggatgtttttttttacttctctttcaTTTGCACTTAAAATATTGTA
CAACAACTGTCAACATCATTTTCGATTCTCGTTTACCAGGTTTTCTTCTA
TAAATTTTTTAGTCTGAGAAAGACATTATGCGGTGCTCACACATCCAAAA
AGAATTGATTTTGGCGGCTATCGATTCTGTGGATGCGAAATCAAAGACTG
GTGGATATGTTGTTTATTCAACTTGTTCCATTATGGTGAGAAGTGAAGTG
ttttcaaatattcaaaataacaaTTTGCCGTGATGAATGAGATGACATGT
GCAAAGTTTCATTATCTTTTCAGTAGTTGATACAATGCATTTAATCTTTA
ACTTCTCTAAGTAAGACtttaaagatattcaattccccACCAATTGACAT
TTTTAGGTTGAAGAGAATGAATGGGTGGTAGATTACGCTTTGGCTCAGCG
AAATGTCAAATTGGTGCCAACCGGTATCGACTTTGGTAAAGAGGGATACA
CAAAGTAAGTTCTTGGTACACTGCGAAAAAACATTTCATTAAAACCAATC
ATCTCGCCTCCCAGACTCGACTCCTGCTCAAAATCATTTCTGAGCTAAAG
AGGCGACAATATCCTGGCTGGTTTAAGAATATATTCTTCGCTCGATTATT
CTATTATCATGTCAGCGGCTTTcccaaaatatatattttttgtatttttg
tgtgTATATTGATTGCTTAGAAACTGTAGTGCTAGTCAATGTTCTGCTAG
TCAATGTTCTACTTCTTGTCTTTTTTCTACTAGATACAAAGACCGTCGTT
TCCATCCGTCGCTAAACTTGACAAGACGTTTTTATCCTCACACACAAAAT
ATGGACGGTTTTTTcgttgccaaatttaaaaagtttgccAACATTATTCC
GAAGAATCAAAAACCAGGTACACGCTTTCTCGAAGTTCACTATATTATTG
TTTTATCGTTAGTATGTTTTCGAAAACTTTGAGTATGTTAGTCTCAATTG
TTTtactttgttttaaaataagTTTCAACAAGTGTTATTTGAGTCCAATT
AATTGTAAGAgtgatttccatttttttgtaGCAGAGGAGGAGGTAGAAGA
GGTAGGAGCTGAAGAAACTTCAGAGAACGAAGATGAAACAGAAGAAACAT
CAGAACAAGCAGAAGAGATGGAAAGTGAAGATGTTCCAGAGAAGAAGGAA
GACActccaaaacaaaaagaagataCTCCAAAGCAAAAGAAGACGAATAA
AAAGCGTAAAAACACAGATACAAAACCAAAGGAATCCACTGACGAGAAAA
GCcccaaaaagaaacaaaagaaaatgccaaagaaagaaaatagtcagaat
aaaacgaaaaaagaaaagactGTTGAAAAAGTTGATAACAACGAAGCTGA
TGAAAATACGACAGAATCGCAAGATAAGAATGAGGAGACACAATCCAAAG
AAGTTGATACACAATCAAAAGAAGTCAGTACACAATCACCAAAAACCACC
AAGaaaacaaacaagaaaaagatcaacaaaaccaaaaaatcacccaataa
aaagaagaaaaagccaGCAGCACAAACctaaaacattcttcatattgagc
ttgtatttttatataattttatcaagaaaaatattgatttttggtgGTCC
TTTGGGGTATATACACTTGACTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009085XLOC_009085Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016257-exon-sc0000232-1491911889:324372..324575TCONS_00016257-exon-sc0000232-1491911889:324372..324575Clytia hemisphaericaexon
TCONS_00016257-exon-sc0000232-1510915933:324372..324575TCONS_00016257-exon-sc0000232-1510915933:324372..324575Clytia hemisphaericaexon
TCONS_00016257-exon-sc0000232-1575043694:324372..324575TCONS_00016257-exon-sc0000232-1575043694:324372..324575Clytia hemisphaericaexon
TCONS_00016257-exon-sc0000232-1491911889:326950..327001TCONS_00016257-exon-sc0000232-1491911889:326950..327001Clytia hemisphaericaexon
TCONS_00016257-exon-sc0000232-1510915933:326950..327001TCONS_00016257-exon-sc0000232-1510915933:326950..327001Clytia hemisphaericaexon
TCONS_00016257-exon-sc0000232-1575043694:326950..327001TCONS_00016257-exon-sc0000232-1575043694:326950..327001Clytia hemisphaericaexon
TCONS_00016257-exon-sc0000232-1491911889:327378..327421TCONS_00016257-exon-sc0000232-1491911889:327378..327421Clytia hemisphaericaexon
TCONS_00016257-exon-sc0000232-1510915933:327378..327421TCONS_00016257-exon-sc0000232-1510915933:327378..327421Clytia hemisphaericaexon
TCONS_00016257-exon-sc0000232-1575043694:327378..327421TCONS_00016257-exon-sc0000232-1575043694:327378..327421Clytia hemisphaericaexon
TCONS_00016257-exon-sc0000232-1491911889:329949..330001TCONS_00016257-exon-sc0000232-1491911889:329949..330001Clytia hemisphaericaexon
TCONS_00016257-exon-sc0000232-1510915933:329949..330001TCONS_00016257-exon-sc0000232-1510915933:329949..330001Clytia hemisphaericaexon
TCONS_00016257-exon-sc0000232-1575043694:329949..330001TCONS_00016257-exon-sc0000232-1575043694:329949..330001Clytia hemisphaericaexon
TCONS_00016257-exon-sc0000232-1491911889:330182..330213TCONS_00016257-exon-sc0000232-1491911889:330182..330213Clytia hemisphaericaexon
TCONS_00016257-exon-sc0000232-1510915933:330182..330213TCONS_00016257-exon-sc0000232-1510915933:330182..330213Clytia hemisphaericaexon
TCONS_00016257-exon-sc0000232-1575043694:330182..330213TCONS_00016257-exon-sc0000232-1575043694:330182..330213Clytia hemisphaericaexon
TCONS_00016257-exon-sc0000232-1491911889:330454..330527TCONS_00016257-exon-sc0000232-1491911889:330454..330527Clytia hemisphaericaexon
TCONS_00016257-exon-sc0000232-1510915933:330454..330527TCONS_00016257-exon-sc0000232-1510915933:330454..330527Clytia hemisphaericaexon
TCONS_00016257-exon-sc0000232-1575043694:330454..330527TCONS_00016257-exon-sc0000232-1575043694:330454..330527Clytia hemisphaericaexon
TCONS_00016257-exon-sc0000232-1491911889:330639..330675TCONS_00016257-exon-sc0000232-1491911889:330639..330675Clytia hemisphaericaexon
TCONS_00016257-exon-sc0000232-1510915933:330639..330675TCONS_00016257-exon-sc0000232-1510915933:330639..330675Clytia hemisphaericaexon
TCONS_00016257-exon-sc0000232-1575043694:330639..330675TCONS_00016257-exon-sc0000232-1575043694:330639..330675Clytia hemisphaericaexon
TCONS_00016257-exon-sc0000232-1491911889:330878..331007TCONS_00016257-exon-sc0000232-1491911889:330878..331007Clytia hemisphaericaexon
TCONS_00016257-exon-sc0000232-1510915933:330878..331007TCONS_00016257-exon-sc0000232-1510915933:330878..331007Clytia hemisphaericaexon
TCONS_00016257-exon-sc0000232-1575043694:330878..331007TCONS_00016257-exon-sc0000232-1575043694:330878..331007Clytia hemisphaericaexon
TCONS_00016257-exon-sc0000232-1491911889:331157..331302TCONS_00016257-exon-sc0000232-1491911889:331157..331302Clytia hemisphaericaexon
TCONS_00016257-exon-sc0000232-1510915933:331157..331302TCONS_00016257-exon-sc0000232-1510915933:331157..331302Clytia hemisphaericaexon
TCONS_00016257-exon-sc0000232-1575043694:331157..331302TCONS_00016257-exon-sc0000232-1575043694:331157..331302Clytia hemisphaericaexon
TCONS_00016257-exon-sc0000232-1491911889:331679..331764TCONS_00016257-exon-sc0000232-1491911889:331679..331764Clytia hemisphaericaexon
TCONS_00016257-exon-sc0000232-1510915933:331679..331764TCONS_00016257-exon-sc0000232-1510915933:331679..331764Clytia hemisphaericaexon
TCONS_00016257-exon-sc0000232-1575043694:331679..331764TCONS_00016257-exon-sc0000232-1575043694:331679..331764Clytia hemisphaericaexon
TCONS_00016257-exon-sc0000232-1491911889:331967..332060TCONS_00016257-exon-sc0000232-1491911889:331967..332060Clytia hemisphaericaexon
TCONS_00016257-exon-sc0000232-1510915933:331967..332060TCONS_00016257-exon-sc0000232-1510915933:331967..332060Clytia hemisphaericaexon
TCONS_00016257-exon-sc0000232-1575043694:331967..332060TCONS_00016257-exon-sc0000232-1575043694:331967..332060Clytia hemisphaericaexon
TCONS_00016257-exon-sc0000232-1491911889:332361..332466TCONS_00016257-exon-sc0000232-1491911889:332361..332466Clytia hemisphaericaexon
TCONS_00016257-exon-sc0000232-1510915933:332361..332466TCONS_00016257-exon-sc0000232-1510915933:332361..332466Clytia hemisphaericaexon
TCONS_00016257-exon-sc0000232-1575043694:332361..332466TCONS_00016257-exon-sc0000232-1575043694:332361..332466Clytia hemisphaericaexon
TCONS_00016257-exon-sc0000232-1491911889:332621..332939TCONS_00016257-exon-sc0000232-1491911889:332621..332939Clytia hemisphaericaexon
TCONS_00016257-exon-sc0000232-1510915933:332621..332939TCONS_00016257-exon-sc0000232-1510915933:332621..332939Clytia hemisphaericaexon
TCONS_00016257-exon-sc0000232-1575043694:332621..332939TCONS_00016257-exon-sc0000232-1575043694:332621..332939Clytia hemisphaericaexon
TCONS_00016257-exon-sc0000232-1491911889:333253..333482TCONS_00016257-exon-sc0000232-1491911889:333253..333482Clytia hemisphaericaexon
TCONS_00016257-exon-sc0000232-1510915933:333253..333482TCONS_00016257-exon-sc0000232-1510915933:333253..333482Clytia hemisphaericaexon
TCONS_00016257-exon-sc0000232-1575043694:333253..333482TCONS_00016257-exon-sc0000232-1575043694:333253..333482Clytia hemisphaericaexon
TCONS_00016257-exon-sc0000232-1491911889:333834..333956TCONS_00016257-exon-sc0000232-1491911889:333834..333956Clytia hemisphaericaexon
TCONS_00016257-exon-sc0000232-1510915933:333834..333956TCONS_00016257-exon-sc0000232-1510915933:333834..333956Clytia hemisphaericaexon
TCONS_00016257-exon-sc0000232-1575043694:333834..333956TCONS_00016257-exon-sc0000232-1575043694:333834..333956Clytia hemisphaericaexon
TCONS_00016257-exon-sc0000232-1491911889:334128..334225TCONS_00016257-exon-sc0000232-1491911889:334128..334225Clytia hemisphaericaexon
TCONS_00016257-exon-sc0000232-1510915933:334128..334225TCONS_00016257-exon-sc0000232-1510915933:334128..334225Clytia hemisphaericaexon
TCONS_00016257-exon-sc0000232-1575043694:334128..334225TCONS_00016257-exon-sc0000232-1575043694:334128..334225Clytia hemisphaericaexon
TCONS_00016257-exon-sc0000232-1491911889:334505..334638TCONS_00016257-exon-sc0000232-1491911889:334505..334638Clytia hemisphaericaexon
TCONS_00016257-exon-sc0000232-1510915933:334505..334638TCONS_00016257-exon-sc0000232-1510915933:334505..334638Clytia hemisphaericaexon
TCONS_00016257-exon-sc0000232-1575043694:334505..334638TCONS_00016257-exon-sc0000232-1575043694:334505..334638Clytia hemisphaericaexon
TCONS_00016257-exon-sc0000232-1491911889:334806..335396TCONS_00016257-exon-sc0000232-1491911889:334806..335396Clytia hemisphaericaexon
TCONS_00016257-exon-sc0000232-1510915933:334806..335396TCONS_00016257-exon-sc0000232-1510915933:334806..335396Clytia hemisphaericaexon
TCONS_00016257-exon-sc0000232-1575043694:334806..335396TCONS_00016257-exon-sc0000232-1575043694:334806..335396Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000232supercontigsc0000232:324372..335396 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.94699	9.76527	1.84188	3.10619	7.00111	6.78662	9.58173	9.90763	9.17029	6.59686	4.95793	5.92015	10.9633	13.485	8.69476	8.24174	4.00394	5.17968	0.511796	2.96317	4.465	4.74636	9.60788	6.83131	8.88027	13.8289	2.16696	2.45811	4.91648	8.23573
Blast
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BLAST of TCONS_00016257 vs. Swiss-Prot (Human)
Match: NOP2 (Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase OS=Homo sapiens GN=NOP2 PE=1 SV=2)

HSP 1 Score: 600.512 bits (1547), Expect = 0.000e+0
Identity = 269/380 (70.79%), Postives = 324/380 (85.26%), Query Frame = 3 
Query:  816 EVFVLPSGQEIEKEGIDPPDLSMVHQRIKDNLHALSDFKKNRQEGRSRHEYLQVLVKDLMKYYSYNEYFMEYLVNLFPGGEILEFLEACEVRRPITIRSNSLKTRRRDLAQSLINRGVNLDPIGKWSKVGLVVYDSSVPIGATPEYLSGHYMLQGASSMLPVMALAPQEHEKIMDMCAAPGGKTTYIGALMKNTGMLVANDAKEERLKSLTANAHRMGINNLIVCNYDGRSFPKVMGGFDRILLDAPCSGTGVISKDEQVKINKSEKDIMRCSHIQKELILAAIDSVDAKSKTGGYVVYSTCSIMVEENEWVVDYALAQRNVKLVPTGIDFGKEGYTKYKDRRFHPSLNLTRRFYPHTQNMDGFFVAKFKKFANIIPKNQ 1955
            E FVLP   E+E++    PDL  VH+RI+D +  L DF   R+EGRSR EYL  L KDL  YYSY ++ +  L++LFP  E++EFLEA EV RP+T+R+N+LKTRRRDLAQ+LINRGVNLDP+GKWSK GLVVYDSSVPIGATPEYL+GHYMLQGASSMLPVMALAPQEHE+I+DMC APGGKT+Y+  LMKNTG+++ANDA  ERLKS+  N HR+G+ N I+ +YDGR FPKV+GGFDR+LLDAPCSGTGVISKD  VK NK EKDI+RC+H+QKEL+L+AIDSV+A SKTGGY+VY TCSI VEENEWVVDYAL +RNV+LVPTG+DFG+EG+T++++RRFHPSL  TRRFYPHT NMDGFF+AKFKKF+N IP++Q
Sbjct:  217 EPFVLPPAGEMEQDA-QAPDLQRVHKRIQDIVGILRDFGAQREEGRSRSEYLNRLKKDLAIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQFPKVVGGFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSLRSTRRFYPHTHNMDGFFIAKFKKFSNSIPQSQ 595
The following BLAST results are available for this feature:
BLAST of TCONS_00016257 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NOP20.000e+070.79Probable 28S rRNA (cytosine(4447)-C(5))-methyltran... [more]
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