TCONS_00016256 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016256
Unique NameTCONS_00016256
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1389

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016256 ID=TCONS_00016256|Name=TCONS_00016256|organism=Clytia hemisphaerica|type=transcript|length=1389bp
atgcattttcgctaaacgatatattttctgactgatttttttctcctcgc
attgctatctaactttcatcatcaggtaggtccattcagcatctagcttg
tttgtGATGCACCTGCTGGATGCCACGTACTGGGTGTTAAACAGGTTTTC
GCTCGAGTAGTTTCACTCGAGGCAAATTTTTAATGGGACTGACCTAAATC
ATCGGGGGTACCATGCTTCCCTAGCGGAACCTAAGAATTGGGCTGAAACC
ATGTGAAAACACCATATCTTGGAAACTGATTTAAATCAAAAAGGTTCATT
CAGCTACTATGTGAACAATTATAGTATGTGTAACaattgaaaatcttaaa
aagaaTTACTCCAAAGTGGAGAAAATAACATAATATCTGGAAATTCTTCC
TCTCAAATAAAaatctcaaataaaaaatttctcatgAAAAAAAATGTGAA
TGCTTCGAGTCATTTAAACAAGTAAATTTATTTAAACTGATGTATAAGTT
ATATCCAGAAAGATGCAAATTACCTTAGAGGGAACTTTTGgggtcgaaaa
aaaaatcaattcccacgaaaattagttttcTTCAGGTACCCATTTTATGG
GACGATATACCCTTTTGAAcactgaaaacagttactccataGTGGGGGTG
GAGATGATAAAGATTTTTCAACTTGGCAGTTACTCATCTTAGTGTCATTG
AGTAACTACGCGATCCCCCTATTTGAATCAATAATTCTTTCTTCTGTTAG
GTATAAACAAGATGGATGTAGTTGTCAACATATTACGTTCCATTCCTTTC
ATCAGAGGACCATATGATTATATAGCAAGCATTGAAACACACATGGATTA
TGAAGGTCAAAGGAAAGCAGAGAAGATTTATCAAGTTATTTTAACAGTGT
TTGGGATCGTTGGATTCATCTGGGGCTTTGCAATTCAACAATTATCTGCG
GCTGTTTATACCGTTCTTGCTGGCTTTGCTCTCTCTTGTTTGATTACATT
ACCACCTTGGTCATTCTTTCGACGAAATCCTTTGGAATGGATGCCTGATC
AAAGTGAAGTCAAAGAAAAGAGCAATAAGAAGACTCAATCGCAAGAATCC
AAGAAAAAGAAGTGATCTTCCTTTAAGCTCTTATCAATTTTATCATTATt
atgtaattttcatttttttatttatcattGATAAGATAAACTGGTAACGG
ACTTGATCTcgtatactttttattgctctACTTCcaagattcaaaataaa
ataaacattcTCAGTACTGCGTGCACCACAATCAATTTTCTCAAgttcta
ccgggtgcgccacaaaaaagtttctctctttaaaactgattttctagaaa
tctaagaattttaaaagagccattcctatttcattggaa
Run BLAST on NCBI

protein sequence of TCONS_00016256-protein

>TCONS_00016256-protein ID=TCONS_00016256-protein|Name=TCONS_00016256-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
MDVVVNILRSIPFIRGPYDYIASIETHMDYEGQRKAEKIYQVILTVFGIV
GFIWGFAIQQLSAAVYTVLAGFALSCLITLPPWSFFRRNPLEWMPDQSEV
KEKSNKKTQSQESKKKK
Run BLAST on NCBI

transcript from alignment at sc0000232:308181..312787+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016256 ID=TCONS_00016256|Name=TCONS_00016256|organism=Clytia hemisphaerica|type=transcript|length=4607bp|location=Sequence derived from alignment at sc0000232:308181..312787+ (Clytia hemisphaerica)
atgcattttcgctaaacgatatattttctgactgatttttttctcctcgc
attgctatctaactttcatcatcaggtaggtccattcagcatctagcttg
tttgtGATGCACCTGCTGGATGCCACGTACTGGGTGTTAAACAGGTTTTC
GCTCGAGTAGTTTCACTCGAGGCAAATTTTTAATGGGACTGACCTAAATC
ATCGGGGGTACCATGCTTCCCTAGCGGAACCTAAGAATTGGGCTGAAACC
ATGTGAAAACACCATATCTTGGAAACTGATTTAAATCAAAAAGGTTCATT
CAGCTACTATGTGAACAATTATAGTATGTGTAACaattgaaaatcttaaa
aagaaTTACTCCAAAGTGGAGAAAATAACATAATATCTGGAAATTCTTCC
TCTCAAATAAAaatctcaaataaaaaatttctcatgAAAAAAAATGTGAA
TGCTTCGAGTCATTTAAACAAGTAAATTTATTTAAACTGATGTATAAGTT
ATATCCAGAAAGATGCAAATTACCTTAGAGGGAACTTTTGgggtcgaaaa
aaaaatcaattcccacgaaaattagttttcTTCAGGTACCCATTTTATGG
GACGATATACCCTTTTGAAcactgaaaacagttactccataGTGGGGGTG
GAGATGATAAAGATTTTTCAACTTGGCAGTTACTCATCTTAGTGTCATTG
AGTAACTACGCGATCCCCCTATTTGAATCAATAATTCTTTCTTCTGTTAG
GTATAAACAAGATGGATGTAGTTGTCAACATATTACGTTCCATTCCTTTC
ATCAGAGGACCATATGATTATATAGCAAGCATTGAAACACACATGGTAAA
CCTTCGTTTTATTTCCTTCTTTCCTTTcgatgggcttttccagaaaaaat
tttacgtatcgaaccccctggatatcctactttattagtaaaaaccccct
ggatatccactcttaaaaacaTGCTCAACCTCTTGGATATCCTCTCTTtc
aaagatgcttacccctggatatcgtattttttacttgaaaagacacttta
cccccctggatatccgctcccttgtagatatttaaccccctggatatcca
cttttgaacaaaaatcgttaaccccctcgatatccgatatcctcaacagg
ggggcacggactatttctggaaaagcccaatcgtATTCAGTACTCATTAG
ATTAtgcatttgtttttcttttccagttttTAAGTTGTATCTTTCTCATC
TCTTTCCAGGATTATGAAGGTCAAAGGAAAGCAGAGAAGATTTATCAAGT
TATTTTAACAGTGTTTGGGGTGAGTTTGATCAGCTTTTAATACTGACATA
ATAATTATGCTAATTTGTAGGAGAGTTGgtatttattgatttttccaATT
AACTCGGacaatattcgattgtgttttcCATTTCCTCTAATATCCTCAAA
TAAGTTGCGAGTAAAATTACAAATGAGAAAAAGTTTTGATATAAATCGAA
TTAGATTGACGATCTTGTGTTCTTTGAAAAGATTATTGTGACGGAAATAT
TATCATANATCTTTCTCATCTCTTTCCAGGATTATGAAGGTCAAAGGAAA
GCAGAGAAGATTTATCAAGTTATTTTAACAGTGTTTGGGGTGAGTTTGAT
TAGCTTTTAATACTGACATAATAATTATGCTAATTTGTAGGGGAGTTGgt
atttattgatttttccaACAGAATTGGTGCTTCTTTAACTCGGacaatat
tcgattgtgttttcCATTTCCTCTAATATCCTCAAATAAGTTGCgagtaa
aattaaaaatgcgATTAACTTTTGATATAAATCGAATTAGATTGACGATC
TTGTGTTCTTTGAAAAGATTATTGTGACGGGAATATTATCATATTTAAaa
atcatagtgtcctccagggtttgttccctcaccaaattctagattttttt
aaattcccccccccctctttttttccccctattacttttcagtttttcag
ttttccccctcttttttgctttccccccagaaaattctgaaaatatcagt
tccccccatatacccatataaatttctcaaatttcaacctacATTACGGT
TTTTATGCCTAGtgaatttttcaatcatgatctaatcacatgatatcata
GAAGAACCTTTTTTAAAATCTGTAAAGTCGACCCGGGTCTGACATCTAGA
ACCAtctcttttgattgaatgaatattgaaaacattttcacaaTGCTGAA
TTGTGAGATTGAAAATTTACTGAAGTAAATTCATAGGATAATTCAAacag
aagttgattttttatctATTCTTCATTGCcaccttttttcaaaagttttt
cacagCATAACATCCCTCTCCGGATTATCTTTTCAAGAAACAAACACAAA
ATGGCTTAAAAACTTGCTCTAATGTTCCTTGGAATATACAAAAAACCAAG
TTATCCTTGAGAAATTAAAAAACAGGTGATTTTCCTggagaaataaaaaa
agcaattgcctttctttaagaaattttccttgagaaatacaagaAACAAG
CGATTTTTTTCTCGAGAATCAACAAAAGACAAGAATTTAGATATAAGACA
ATAAGTAagtgattttccttgaagaatacaAACAACCATAAATGAATTTC
CTTAGGAAATACAAAAAACGTTTCCCTTGAGAAATAAAGGAGCAAGCGAT
TTTCCTCGAAGGAGACAAGAAAACACAagtgattttccttgagttTATGG
TACTCATAAAAAGCtatctttctttaaaaatacaataaatcTGAAACGAA
TAACTAGTTTCCTTTAGCAAATTTGCCATCTTTCttgtcttgaaaaaaaa
atatataagtgAATTTCCTTTCTGTCTACTGGCTTTCTTGAGACACAAAA
AATGTAGTCATTTTGCCTGAGCAAGAAATACGTGATTTTCCCTAAGaaat
tcattttccttgagaattTATACAAAAAACAAGCGATTTTAATTTAGAAA
CAAGAAGTCATTAGTCAGTCATTAGTAAATTTGTTTtgggaaatacaaaa
aaagtaGTCATTTCTATTGAGTCAATCAATAATAATCTTATGatatcaac
ttgaaaaatacaagCAAACTTTTGACTTGTCTTAGGTAAAGCAAATAAAG
caaattattttgtaaatttcttcgggaaaattataaaaaccAACTAACTT
CTCTCGGAAAacgcaaaaaataaataaataattgcattagaaatattcaa
atcaaACGATCAATCGATTACTAGACTCGCCCAATTTCCATGTATAATAA
TTAGTGGTTTTCCTCAAAAAGGAAGGAAAAGTTGAGCAATTTTTTTGGGT
TGAAAATTTTCGGGTGTGGTTTTGTTTGTTGACATTTTTCTAATGCTCTT
ACTTTTTACAGGTGTAACGAATTTACAAGAAACTTTCACTAAAGATTAAT
TCTTAAATCTCGCACGAGtacaaaataatttattataTAGTCTTTTTTTT
ATTGCGTTTAGATCGTTGGATTCATCTGGGGCTTTGCAATTCAACAATTA
TCTGCGGCTGTTTATACCGTTCTTGCTGGCTTTGCTCTCTCTTGTTTGGT
AAGTTTCTACAATAGCTCATTCGTCTCCTCTTCTTCCcctttcatcaaaa
tttaaaacaccCCAGTGCCACAGACCCTTTAGACCTGCCCCACTGGAAGA
TTTGACCAAAATCTCGTCcttggtgggaaaaataccctacaatttcatcc
ccactgtgggagaaagttccaccggggctgtgagacaggagcgtatttta
aagaaaatacaaaCGAATTCAGTGTATGTAATTTGTGTGTGGAGGttatt
acacccccttctcacagacacaCTGGGAACTCTTctcactgaaaaaattg
gcaaaaatatcgtccccagtggaaaattatactctaatatttgtccccgc
tgaaaataaccagataagcaaaccctcactgcaaaatattgtgctaattc
ttccatccccactgaaagtccccagccataaaaaatatgggaatatcaat
cacgagttttggtccgttatttttacccccattggctacgaaatcccacc
gggtctgtgagaagggggtgtgttaTTGAACATAGAACCCATATAGAATT
TTGACGTAAGACTGTCTTCAATTACACGGGTTGTGGTGATGAAGTATATT
TCTCTTGTAGATTACATTACCACCTTGGTCATTCTTTCGACGAAATCCTT
TGGAATGGATGCCTGATCAAAGTGAAGTCAAAGAAAAGAGCAATAAGAAG
ACTCAATCGCAAGAATCCAAGAAAAAGAAGTGATCTTCCTTTAAGCTCTT
ATCAATTTTATCATTATtatgtaattttcatttttttatttatcattGAT
AAGATAAACTGGTAACGGACTTGATCTcgtatactttttattgctctACT
TCcaagattcaaaataaaataaacattcTCAGTACTGCGTGCACCACAAT
CAATTTTCTCAAgttctaccgggtgcgccacaaaaaagtttctctcttta
aaactgattttctagaaatctaagaattttaaaagagccattcctatttc
attggaa

Coding sequence (CDS) from alignment at sc0000232:308181..312787+

>TCONS_00016256 ID=TCONS_00016256|Name=TCONS_00016256|organism=Clytia hemisphaerica|type=CDS|length=1416bp|location=Sequence derived from alignment at sc0000232:308181..312787+ (Clytia hemisphaerica)
ATGGATGTAGTTGTCAACATATTACGTTCCATTCCTTTCATCAGAGGACC
ATATGATTATATAGCAAGCATTGAAACACACATGGATTATGAAGGTCAAA
GGAAAGCAGAGAAGATTTATCAAGTTATTTTAACAGTGTTTGGGATCGTT
GGATTCATCTGGGGCTTTGCAATTCAACAATTATCTGCGGCTGTTTATAC
CGTTCTTGCTGGCTTTGCTCTCTCTTGTTTGATTACATTACCACCTTGGT
CATTCTTTCGACGAAATCCTTTGGAATGGATGCCTGATCAAAGTGAAGTC
AAAGAAAAGAGCAATAAGAAGACTCAATCGCAAGAATCCAAGAAAAAGAA
GTGAATGGATGTAGTTGTCAACATATTACGTTCCATTCCTTTCATCAGAG
GACCATATGATTATATAGCAAGCATTGAAACACACATGGATTATGAAGGT
CAAAGGAAAGCAGAGAAGATTTATCAAGTTATTTTAACAGTGTTTGGGAT
CGTTGGATTCATCTGGGGCTTTGCAATTCAACAATTATCTGCGGCTGTTT
ATACCGTTCTTGCTGGCTTTGCTCTCTCTTGTTTGATTACATTACCACCT
TGGTCATTCTTTCGACGAAATCCTTTGGAATGGATGCCTGATCAAAGTGA
AGTCAAAGAAAAGAGCAATAAGAAGACTCAATCGCAAGAATCCAAGAAAA
AGAAGTGAATGGATGTAGTTGTCAACATATTACGTTCCATTCCTTTCATC
AGAGGACCATATGATTATATAGCAAGCATTGAAACACACATGGATTATGA
AGGTCAAAGGAAAGCAGAGAAGATTTATCAAGTTATTTTAACAGTGTTTG
GGATCGTTGGATTCATCTGGGGCTTTGCAATTCAACAATTATCTGCGGCT
GTTTATACCGTTCTTGCTGGCTTTGCTCTCTCTTGTTTGATTACATTACC
ACCTTGGTCATTCTTTCGACGAAATCCTTTGGAATGGATGCCTGATCAAA
GTGAAGTCAAAGAAAAGAGCAATAAGAAGACTCAATCGCAAGAATCCAAG
AAAAAGAAGTGAATGGATGTAGTTGTCAACATATTACGTTCCATTCCTTT
CATCAGAGGACCATATGATTATATAGCAAGCATTGAAACACACATGGATT
ATGAAGGTCAAAGGAAAGCAGAGAAGATTTATCAAGTTATTTTAACAGTG
TTTGGGATCGTTGGATTCATCTGGGGCTTTGCAATTCAACAATTATCTGC
GGCTGTTTATACCGTTCTTGCTGGCTTTGCTCTCTCTTGTTTGATTACAT
TACCACCTTGGTCATTCTTTCGACGAAATCCTTTGGAATGGATGCCTGAT
CAAAGTGAAGTCAAAGAAAAGAGCAATAAGAAGACTCAATCGCAAGAATC
CAAGAAAAAGAAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009084XLOC_009084Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016256-exon-sc0000232-1491911889:308181..309025TCONS_00016256-exon-sc0000232-1491911889:308181..309025Clytia hemisphaericaexon
TCONS_00016256-exon-sc0000232-1510915933:308181..309025TCONS_00016256-exon-sc0000232-1510915933:308181..309025Clytia hemisphaericaexon
TCONS_00016256-exon-sc0000232-1575043694:308181..309025TCONS_00016256-exon-sc0000232-1575043694:308181..309025Clytia hemisphaericaexon
TCONS_00016256-exon-sc0000232-1491911889:309440..309499TCONS_00016256-exon-sc0000232-1491911889:309440..309499Clytia hemisphaericaexon
TCONS_00016256-exon-sc0000232-1510915933:309440..309499TCONS_00016256-exon-sc0000232-1510915933:309440..309499Clytia hemisphaericaexon
TCONS_00016256-exon-sc0000232-1575043694:309440..309499TCONS_00016256-exon-sc0000232-1575043694:309440..309499Clytia hemisphaericaexon
TCONS_00016256-exon-sc0000232-1491911889:311692..311778TCONS_00016256-exon-sc0000232-1491911889:311692..311778Clytia hemisphaericaexon
TCONS_00016256-exon-sc0000232-1510915933:311692..311778TCONS_00016256-exon-sc0000232-1510915933:311692..311778Clytia hemisphaericaexon
TCONS_00016256-exon-sc0000232-1575043694:311692..311778TCONS_00016256-exon-sc0000232-1575043694:311692..311778Clytia hemisphaericaexon
TCONS_00016256-exon-sc0000232-1491911889:312391..312787TCONS_00016256-exon-sc0000232-1491911889:312391..312787Clytia hemisphaericaexon
TCONS_00016256-exon-sc0000232-1510915933:312391..312787TCONS_00016256-exon-sc0000232-1510915933:312391..312787Clytia hemisphaericaexon
TCONS_00016256-exon-sc0000232-1575043694:312391..312787TCONS_00016256-exon-sc0000232-1575043694:312391..312787Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016256-proteinTCONS_00016256-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000232supercontigsc0000232:308181..312787 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
55.4545	56.8469	56.9526	56.2938	33.8532	27.6735	47.1004	45.2002	38.3074	37.4995	25.474	32.849	25.6174	19.7478	24.6814	25.9164	22.2847	24.8276	13.1191	17.6695	22.0521	22.2957	28.5887	26.5868	23.2276	24.8771	19.8766	20.7222	20.87	18.4013
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR009542SPC12
Vocabulary: Cellular Component
TermDefinition
GO:0005787signal peptidase complex
GO:0016021integral component of membrane
Vocabulary: Molecular Function
TermDefinition
GO:0008233peptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006465signal peptide processing
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006465 signal peptide processing
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005787 signal peptidase complex
molecular_function GO:0008233 peptidase activity
Blast
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BLAST of TCONS_00016256 vs. Swiss-Prot (Human)
Match: SPCS1 (Signal peptidase complex subunit 1 OS=Homo sapiens GN=SPCS1 PE=1 SV=4)

HSP 1 Score: 95.1301 bits (235), Expect = 2.368e-23
Identity = 40/80 (50.00%), Postives = 60/80 (75.00%), Query Frame = 3 
Query:  816 DYIASIETHMDYEGQRKAEKIYQVILTVFGIVGFIWGFAIQQLSAAVYTVLAGFALSCLITLPPWSFFRRNPLEWMPDQS 1055
            ++++S+ T MDY+GQ+ AE+++Q I+    IVGFI+G+  +Q    VY V+AGFA SCL+TLPPW  +RR+PL+W+P Q 
Sbjct:    3 EHLSSLPTQMDYKGQKLAEQMFQGIILFSAIVGFIYGYVAEQFGWTVYIVMAGFAFSCLLTLPPWPIYRRHPLKWLPVQE 82
The following BLAST results are available for this feature:
BLAST of TCONS_00016256 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPCS12.368e-2350.00Signal peptidase complex subunit 1 OS=Homo sapiens... [more]
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