TCONS_00016256-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00016256-protein
Unique NameTCONS_00016256-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length117

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00016256-protein ID=TCONS_00016256-protein|Name=TCONS_00016256-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
MDVVVNILRSIPFIRGPYDYIASIETHMDYEGQRKAEKIYQVILTVFGIV
GFIWGFAIQQLSAAVYTVLAGFALSCLITLPPWSFFRRNPLEWMPDQSEV
KEKSNKKTQSQESKKKK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009084XLOC_009084Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00016256TCONS_00016256Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009542SPC12
Vocabulary: Cellular Component
TermDefinition
GO:0005787signal peptidase complex
GO:0016021integral component of membrane
Vocabulary: Molecular Function
TermDefinition
GO:0008233peptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006465signal peptide processing
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006465 signal peptide processing
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005787 signal peptidase complex
molecular_function GO:0008233 peptidase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.1250.20coord: 39..115
e-value: 1.3E-4
score: 20.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 96..117
IPR009542Microsomal signal peptidase 12kDa subunitPFAMPF06645SPC12coord: 28..97
e-value: 3.4E-30
score: 103.8

Blast
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BLAST of TCONS_00016256-protein vs. Swiss-Prot (Human)
Match: SPCS1 (Signal peptidase complex subunit 1 OS=Homo sapiens GN=SPCS1 PE=1 SV=4)

HSP 1 Score: 100.523 bits (249), Expect = 6.530e-29
Identity = 45/99 (45.45%), Postives = 68/99 (68.69%), Query Frame = 0 
Query:   19 DYIASIETHMDYEGQRKAEKIYQVILTVFGIVGFIWGFAIQQLSAAVYTVLAGFALSCLITLPPWSFFRRNPLEWMPDQSEVKEKSNKKTQSQESKKKK 117
            ++++S+ T MDY+GQ+ AE+++Q I+    IVGFI+G+  +Q    VY V+AGFA SCL+TLPPW  +RR+PL+W+P    V+E S    +  E K K+
Sbjct:    3 EHLSSLPTQMDYKGQKLAEQMFQGIILFSAIVGFIYGYVAEQFGWTVYIVMAGFAFSCLLTLPPWPIYRRHPLKWLP----VQESSTDDKKPGERKIKR 97
The following BLAST results are available for this feature:
BLAST of TCONS_00016256-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPCS16.530e-2945.45Signal peptidase complex subunit 1 OS=Homo sapiens... [more]
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