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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016209 ID=TCONS_00016209|Name=TCONS_00016209|organism=Clytia hemisphaerica|type=transcript|length=1504bp
TTCAATGCACAGAACTTGAATTTTGTTTTCTATGATTCGTATCCACAAGC
CTTCTGTGACCCATCGATCAATACAACAATTTTACCGACAGTTCAGCCGA
AAACCGAGTACGACCCGACATCACACGACATGCATGCGACAAACGAACAA
CTTGTACAACAAATGCACCATCAAACGACGACAAAACCAATTCGAAAGAA
ACCAAGGATTTTATTTTCACAATCTCAAGTTATGGAGTTAGAGAAGAAAT
TTAAAGAACAAAAATATCTATCAGCTTCCGAACGTGACCAAATGGCATCA
AAATTAAATCTAACACCAACACAGGTCAAAATTTGGTTCCAAAACAAAAG
GTACAAGTGCAAGAAACAATCACAAGAATCCAGGCGTGGAATCCACCCAC
CTCCCTACGAATGGCCTTCACTCTTCAACCACCAACGTAATGTTCCTGTC
TTAGTACAACCACCATCATGCCCGCCCCATTGCTATCGCCCTTCGCCACC
ATCGGTTAATTTAAACTCGCCTATCCCGAGTGAAAGCTATACCGGTTATT
TTCCGGAAAGCTACACTGCTCCACATTACAATAACAATGTTTATTCAACT
TCACCTTATAACCAATGGCCGTGCTACAAGTGATACCatattgaattaaa
aattaCGGTGCTCAGTGGGATCTAATTGGTTGGATCAAGGAGTAAATGAT
GCTTTTTCTTCGTACGATGGTCTAAAAGTTCTAACGGGAAAAATGAAGCT
AGGTACATGTCAAGATGGACGGAAATGATGACCTAAACTGAAAATTGAAC
CTTTTTCTAGAAGCAAGAAagacttatttatttttttactaaaaGCGACC
TGGCTGTCGCTCTTGCTTTCGAAATAAGAGAAGaacaaaattctttattt
tgaaaaaacggaGGAATGAAACACgctgtaaatattttttcatatacatt
gtacatattttttgtttttttgttgttgtttttaagaTAGAAAAGATAGG
GTTTTAGGGAAATTATAATTGCTGTAAAATAGTGTGCGGACGAATTTCTC
AGAGGAAAATATTGTGATGGAGACCAAAGATTGACAATTTTTCCGTGGTC
ACACAGTAAAAAAGGCTTCTACAGCCTGGTTTCCATACAAAGGTTTATTA
CTTTTGGGTACTTTTAAAGGTCATGATTAAAACAAGGATGCTTTTGTTGG
GATCTATTGTCAATGATCAAGTTTTGACAAGCTTTAGCCTGCTCCTGCAG
CCAGTAGAAAAAATACTTTCACAATCGTCTTTTATGCTGTTTTTGGCTAT
AAAAACAATTTATGGGTCTTTTGATACTAAACATATCTCTGAGAATAAAC
CTCTTGAAATATCATTTTTGGTGAGGACGCATTTTTAACTTATTTTGTTT
TATCGCaatatatattttgaaagagatattttttaaaagaaatctttttt
tttgtacaGAGTTACTGTTTATTAGGAATATTTTGTTGGAATTGATATTA
AAAA Run BLAST on NCBI transcript from alignment at sc0000231:36432..42492- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016209 ID=TCONS_00016209|Name=TCONS_00016209|organism=Clytia hemisphaerica|type=transcript|length=6061bp|location=Sequence derived from alignment at sc0000231:36432..42492- (Clytia hemisphaerica)
TTCAATGCACAGAACTTGAATTTTGTTTTCTATGATTCGTATCCACAAGC
CTTCTGTAAGTTTTTCAGAATTCATTTCGTAGATTTTCAATTTCCTTGGC
GTTCTTTCCGCAGTATTTCTGTTGAATTATTTTGACCTATTCAAAAAAAG
AACAATGTTCTTGTGTGTAATACTCTGGAACTAAGGCGTTCAAATATGCA
CACATTGATTTTTTACATAATTCAAAACATTTCCGATTTCCGACATAAGT
CCGTAAATTGGTTTATCCGGTATCGATCGGTCTTATTCTAATTGGGTCAT
TTGTTTTGAGCTTTATTGGTTCTTAGAAAAACTTCTAAACTGCCTTTCTA
AATCGAAGCTCTATAATTTGCATTATAACTTTAATTCAAAGTATCTCTAT
TTCGAATTCTTAAGGAATTTGAAACAAAAGTCTCTGAAAGATATGACTAG
CCAAGGTCTGACACTCTATCTTAAGGATAGTTGATTGCATGCAATGTGAA
CTAGGACGATCAGTGGCCCTGGGTAAGCAGTAGACAGAAAGTAAAGGCAC
CACGGAAAAGTAAAAGAACGATTTGAAAATAAAATCTCTTGTTTTTTTAA
TATCACTATTCGCCCCCAATACCCAATAGGGAGATGAGTAAAGTTTCAAT
GATGTATCTTTCGGATTGGGATCAAATGTGATGAATTTTTTGTACCCTGA
ATAACTTTGACTTTATTACGAGTAGAGTGAGAGCCAGCAATACAGATCTA
ATTATTTCCAACAATATGATATAGAGATATACTAAGTATTTGTGTAGTGA
GAAGTAAGGCATTTGCAAAAATACGTATTTGGGCACTCCTATCTCAGTTA
ACCGGCGAGAAGGGGGCGATTGGTAAATGTCGATGGATGGATTTCCTACA
ACAGTCTGTGACAGGACAAATCAACAAATTTTGGCAACTTTAGATGTTGG
TGTGATTTTTATGGTTAGCAAGTGTAGCTTGTTTATATCTACCACCTTAT
ACCGAAAATTAGTACATTCAATGAAAGAGATGGCCCTAAGTAAACAAAAA
AATGTGACGATATAAACTATTACACAAATCATAAAAAAGAAAATTCTTTA
AAGGTTACCAGTAATTCTACCATGGAGGTGTCCAAAGGAGAATATACAGT
GTAAGAACCCAGAAAATCTTTGATAAACCTTTGGTCTTTTTTTTTGGAAC
TTTGAGCCTTAAATTCTTTTTATCCTTTTTCTCTTAGGCAAAAGTGAAGT
TGTCTTAGGTTTTACATCTAATTTTTTCTAATTTCACTTCATAGACATTC
AATATGCTCAGCGTTCCTTTTACATATCTCCACTTTTTGGTATTTTGAGC
CTACACGTTTTTTTTTTTTAAAAGAACGTCAAAAATTTTCGAAGCCTTCG
GATGTTCTTAGTTTTTTGGATTTGAAGCCTAAAAATGTTCTTAAAATGTT
CTTATTTTCAGCATTTTTTGAGCATTTTGATGTAATTTCTTAAGAAAATG
CACGTTTTTAAGTCTCCAAAGCCTTAGAATATTCTTAGAATGTTCTTAAA
TTTTTGGGCCTCGAAGCCTTATGTTCTTATATAGTTTGTTCTTATAAAAA
AAAAACGTGTAACTTTTCTCAGTCTTATAAAAAAGGAGTGTAGAGTGAAA
TATGTAGAAGGGACGGTAGGTGGCAATCTTTATCAGGCAAGGTCAGTCAT
CTGCACAATACCCCAGCTGGCACTTGACGTCATATCAACGTCCATTAGAC
ATGCATAATGTCCAAGTAACGTTATTTGAACGTTAAAACAACGTCGTTTG
CTTGCTGCACAATAATCATAGTTTTAGTAGTTGATCGTGGTGGCAATGTT
TTTATTTGGTTTAAAAAAAATGTTGATGATTATACATACTGGGTTCAGAA
AAGGAACAAACAAAAAATTAGGAGTATGCGTTTTGACGTCATTCTAAGGT
TTGTTAGCATTTCTGGTGATGTTATTCTTATATCGAAGGCCTCAGTTCAA
TGGAAAAGTATCTTTATAAGCCACGTCGCAAAAAAAGCATCGAAAAAAAG
TCACTGTTGTTTATCAAAAGTATTAAATCAAAATATAAACAGGATCTACA
TTGGATTCCCTATGATTTTCTCTTGCAACTGGTTGGTCACCATATTGTCA
TTTTTGTATGCCTTTAGTTTGTTTTTCTTTTGTTATGTTTTTTTGTGTAT
ACGTGTTTTCATGGAAATTAAGCTTTATGTAAACCTTTTGGTTTGAACGA
GGGGTAATCTTGCTATAAAAAGAGATTGTCCGTATATCATTCTAGAATCA
GGCTTCGTGCAATATAGAGAATCTAACTCAATACTGATTTATTGGTTAAT
TTGAAAGCTTTGGTAGATCTCTCAGTGATTTTTGAGAATCTGAAATTTTG
TGCAGCATGAAGTACGATGAATCAAATCTTCTTTCTTTGTCTTCCAACAC
AATGGAACTTATTCATGCGTTGAGTGATTGTTTCTTTGGGCCAATGACTG
CTAATTGTCAATTGAAGAAAGGTAGATTGGTTGACAAAAGATTTTTTTTT
TTTTTGGAATTGGTTCTTAAGTTTTGTTTTATTTGCGTTTTGTTTACAAT
CGTTTTGAGCTTCGAAAACTACCATTAGAAAATCAAGGACATACTGCCCA
GAAACGCCCTATCTTTAACAGACTTTGATTAAAAGACACAATGTGCGTAA
CCAAGTAAAACTCAAACATCCCTTTTTGCATCGTTTCTTTTGTAGCGATG
GTTTTTCCGAGTGTAATATATCCACCTTACTATAAAACGGCAAATATTGG
CCATCCATGGATTTAATATAGATGGCTTCTCTATATTAAATCCATGGGTT
ATCTAATAGCTTTAGAAGTAATAGACTTTATTCATGTCTATTTATGTAAT
TCAACTTTGATTGATTCAGTGTTTAGCTTGCCAAGGGAAATCGAAACTTA
CTTAGTAAACCAAGAGTGTTATTGATTTTAACCAAGAATTAGAATAACAG
GAAACGAGAAATTTTGACGTTCCAAAAAAAAAGGAACAACACAAATACTA
GGTTACTTGCTGTCTTATAATTTTCAACAAATTACGAATTTTAAAAATTG
TTTATGTTTTTTTCAAGTTTAGTCAAACTTTAATTATAACTGATTTCAAA
GGGTTCATATGAACATATCATAAATCGACAGGCATATAATCATAACGAGC
GCAAGTCTGATTTGCAATTGATTTGCAATGCAATCTTTTTCACCATTTAG
GCGAAAATTATTACGTCATCATTCCTTTTAAGATAAAAATCATGGGCTCA
AAATCAGACTTACGCATATAAATCAACCTTGTGAAAATTTCCCTGTACAT
TCCCAACATTATTATAAAGAATTAGATCTAAAAGTCAAGTTGCCATGAGT
AGTGTTTCTTTCGTAGTAGAAAGACTTTATAGCAGCCCTCCATTACAAGG
TTGAAAGTCGATGAAAATGGATACACTAGAGTGCCCTTCAACATTGTCAA
GTTTTGTAAAGAGAAATCTTACGACCCTCGACTTGTTTTACATCTAACGT
TCTTGTATTCTTCTGTTTAAATTAAAAAGCCCTTTTTGTTATAAAACACA
AAAATAGCATCACAGTCTTCTAAACCCCCCCCCCCCCAAGGAGCAGTGCA
TAAACAAAGCTTACGGACAGTTCTTGCGAAATTGGCCTAAAAAGTGAAAT
CAAATTCCTACAAAATTTTTATGAATGAATAAACAAAGAGTATAGTTTTC
TGACAAGTAGAAAATTCGTAAAAGTTAAATTCTACAAAAAAATGTTTGCG
CAAAAATTTGTTTCCATAAGGTTTGTAAATGGTAGGTGGTGCGAACATGA
CCTAGAGTGAATGCTGAGTAAAATTGAAAGCATTCCTCTTCGGATAAAAT
GGGAGTAATCCTGCTAATACTATAGTGATGAACAATACCCGCTTTATCAA
TGTAACTATTTTTAGTGAAAACGCATAATAGGTCGCGATGCGATAATATA
AACAAAAGCTGGCGTTGGATAAACAAGAATTTCTATTCTTCTCAAATACG
CCATGACATTGATGCTTTGAAGGATTTGTTGTTTTTTGTGGTTTGGGAAG
GGTACCACTTGTATATAAAAGCTAGAAACATGTACCTACTTCATATCACA
CTTCTACTTCAAAACACAACAAAATTTGTGAGGTACTTTTGACTCTCTCA
CACTTATAACAAATACGATTTTCTAAATTGGTACTCTTTGATACTCACAG
GTGACCCATCGATCAATACAACAATTTTACCGACAGTTCAGCCGAAAACC
GAGTACGACCCGACATCACACGACATGCATGCGACAAACGAACAACTTGT
ACAACAAATGCACCATCAAACGACGACAAAACCAATTCGAAAGAAACCAA
GGATTTTATTTTCACAATCTCAAGTTATGGAGTTAGAGAAGAAATTTAAA
GAACAAAAATATCTATCAGCTTCCGAACGTGACCAAATGGCATCAAAATT
AAATCTAACACCAACACAGGTAAACTATAAATGACTTGCTCTTCTTTCCA
ATGTGCATGTACATATATACGTATATCATTAGCCTTTGCTCATACTCGAG
CCAAACCAACAAATTTAAAGGTCGTGCAAGTTGATCTCGGTAGGAGATTG
GTCTTAGCTATATCTCATGCGACTATATTGTTAAGGACTTCTATCTGGTT
ATTCAGTTAATTGATTCAAACCTATAGTTGCCAAACTTCCAGAATAAATT
GAAATGTAACCAAACAAATAGTTCAAAATCCTCAATACAATTCGTAATTT
ATTGTGTGATCGAAAGATTCCCGAAAAATCTTACAGAAATTTAGATCATT
CATTCATTGTGTATTCATTTTTTCTTTCCAGGTCAAAATTTGGTTCCAAA
ACAAAAGGTACAAGTGCAAGAAACAATCACAAGAATCCAGGCGTGGAATC
CACCCACCTCCCTACGAATGGCCTTCACTCTTCAACCACCAACGTAATGT
TCCTGTCTTAGTACAACCACCATCATGCCCGCCCCATTGCTATCGCCCTT
CGCCACCATCGGTTAATTTAAACTCGCCTATCCCGAGTGAAAGCTATACC
GGTTATTTTCCGGAAAGCTACACTGCTCCACATTACAATAACAATGTTTA
TTCAACTTCACCTTATAACCAATGGCCGTGCTACAAGTGATACCATATTG
AATTAAAAATTACGGTGCTCAGTGGGATCTAATTGGTTGGATCAAGGAGT
AAATGATGCTTTTTCTTCGTACGATGGTCTAAAAGTTCTAACGGGAAAAA
TGAAGCTAGGTACATGTCAAGATGGACGGAAATGATGACCTAAACTGAAA
ATTGAACCTTTTTCTAGAAGCAAGAAAGACTTATTTATTTTTTTACTAAA
AGCGACCTGGCTGTCGCTCTTGCTTTCGAAATAAGAGAAGAACAAAATTC
TTTATTTTGAAAAAACGGAGGAATGAAACACGCTGTAAATATTTTTTCAT
ATACATTGTACATATTTTTTGTTTTTTTGTTGTTGTTTTTAAGATAGAAA
AGATAGGGTTTTAGGGAAATTATAATTGCTGTAAAATAGTGTGCGGACGA
ATTTCTCAGAGGAAAATATTGTGATGGAGACCAAAGATTGACAATTTTTC
CGTGGTCACACAGTAAAAAAGGCTTCTACAGCCTGGTTTCCATACAAAGG
TTTATTACTTTTGGGTACTTTTAAAGGTCATGATTAAAACAAGGATGCTT
TTGTTGGGATCTATTGTCAATGATCAAGTTTTGACAAGCTTTAGCCTGCT
CCTGCAGCCAGTAGAAAAAATACTTTCACAATCGTCTTTTATGCTGTTTT
TGGCTATAAAAACAATTTATGGGTCTTTTGATACTAAACATATCTCTGAG
AATAAACCTCTTGAAATATCATTTTTGGTGAGGACGCATTTTTAACTTAT
TTTGTTTTATCGCAATATATATTTTGAAAGAGATATTTTTTAAAAGAAAT
CTTTTTTTTTGTACAGAGTTACTGTTTATTAGGAATATTTTGTTGGAATT
GATATTAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016209-exon-sc0000231-1575043694:42438..42492 | TCONS_00016209-exon-sc0000231-1575043694:42438..42492 | Clytia hemisphaerica | exon |
| TCONS_00016209-exon-sc0000231-1575043694:37974..38242 | TCONS_00016209-exon-sc0000231-1575043694:37974..38242 | Clytia hemisphaerica | exon |
| TCONS_00016209-exon-sc0000231-1575043694:36432..37611 | TCONS_00016209-exon-sc0000231-1575043694:36432..37611 | Clytia hemisphaerica | exon |
| TCONS_00016209-exon-sc0000231-1510915933:42438..42492 | TCONS_00016209-exon-sc0000231-1510915933:42438..42492 | Clytia hemisphaerica | exon |
| TCONS_00016209-exon-sc0000231-1510915933:37974..38242 | TCONS_00016209-exon-sc0000231-1510915933:37974..38242 | Clytia hemisphaerica | exon |
| TCONS_00016209-exon-sc0000231-1510915933:36432..37611 | TCONS_00016209-exon-sc0000231-1510915933:36432..37611 | Clytia hemisphaerica | exon |
| TCONS_00016209-exon-sc0000231-1491911889:42438..42492 | TCONS_00016209-exon-sc0000231-1491911889:42438..42492 | Clytia hemisphaerica | exon |
| TCONS_00016209-exon-sc0000231-1491911889:37974..38242 | TCONS_00016209-exon-sc0000231-1491911889:37974..38242 | Clytia hemisphaerica | exon |
| TCONS_00016209-exon-sc0000231-1491911889:36432..37611 | TCONS_00016209-exon-sc0000231-1491911889:36432..37611 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000231 | supercontig | sc0000231:36432..42492 - |
Blast
BLAST of TCONS_00016209 vs. Swiss-Prot (Human)
Match: NKX26 (Homeobox protein Nkx-2.6 OS=Homo sapiens GN=NKX2-6 PE=1 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 1.035e-24 Identity = 63/148 (42.57%), Postives = 83/148 (56.08%), Query Frame = 1
Query: 193 RKKPRILFSQSQVMELEKKFKEQKYLSASERDQMASKLNLTPTQVKIWFQNKRYKCKKQSQESRRGIHPPPYEWPSLFNHQRNVPVLVQPPSCPPHCYRPSPPSVNLNSPI-----PSESYTGYFPESYTAPHYNNNVYSTSPYNQWP 621
R+KPR+LFSQ+QV+ LE++FK+Q+YLSA ER+ +AS L LT TQVKIWFQN+RYKCK+Q Q+ + P L + VPVLV+ C P P + SP P Y GY Y A + Y+ +P P
Sbjct: 132 RRKPRVLFSQAQVLALERRFKQQRYLSAPEREHLASALQLTSTQVKIWFQNRRYKCKRQRQDKSLELAGHP-----LTPRRVAVPVLVRDGK---PCLGPGPGAPAFPSPYSAAVSPYSCYGGYSGAPYGAGY--GTCYAGAPSGPAP 269
The following BLAST results are available for this feature:
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