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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016205 ID=TCONS_00016205|Name=TCONS_00016205|organism=Clytia hemisphaerica|type=transcript|length=855bpRun BLAST on NCBI protein sequence of TCONS_00016205-protein >TCONS_00016205-protein ID=TCONS_00016205-protein|Name=TCONS_00016205-protein|organism=Clytia hemisphaerica|type=polypeptide|length=249bp MEEIEIPNEKPFDQVTEDLQSTHITDEPIELNTPVNPSDDPSLKIEQNGERun BLAST on NCBI transcript from alignment at sc0000231:277398..330478+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016205 ID=TCONS_00016205|Name=TCONS_00016205|organism=Clytia hemisphaerica|type=transcript|length=53081bp|location=Sequence derived from alignment at sc0000231:277398..330478+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000231:277398..330478+ >TCONS_00016205 ID=TCONS_00016205|Name=TCONS_00016205|organism=Clytia hemisphaerica|type=CDS|length=6750bp|location=Sequence derived from alignment at sc0000231:277398..330478+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00016205 vs. Swiss-Prot (Human)
Match: TTC1 (Tetratricopeptide repeat protein 1 OS=Homo sapiens GN=TTC1 PE=1 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 1.361e-54 Identity = 96/174 (55.17%), Postives = 128/174 (73.56%), Query Frame = 2
Query: 302 QKHKEAITLKDEGNVLFKNAEYEKAVGLYTQGLQTCPKCFSKTLAILYSNRAACHMKTDESEKGIEDCTQALTCDEHYTKARIRRAQIYETTDKLDEALKDYNEVLSYDRTNKIALDAAMRLPKQIEERNXXXXXXXXXXXXDLGNMCLKPFGLSTENFKFQQDPKTGGYSVNF 823
++ +E+ LK+EGN FK +Y +A Y++ L+ CP CF K +IL+SNRAA MK D+ E I DC++A+ + Y +A +RRA++YE TDKLDEAL+DY +L D + A +A MRLPKQIEERNE+LKEEM+GKLKDLGN+ L+PFGLSTENF+ +QD TG YS+NF
Sbjct: 111 KRREESTRLKEEGNEQFKKGDYIEAESSYSRALEMCPSCFQKERSILFSNRAAARMKQDKKEMAINDCSKAIQLNPSYIRAILRRAELYEKTDKLDEALEDYKSILEKDPSIHQAREACMRLPKQIEERNERLKEEMLGKLKDLGNLVLRPFGLSTENFQIKQDSSTGSYSINF 284 The following BLAST results are available for this feature:
BLAST of TCONS_00016205 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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