TCONS_00016205-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00016205-protein
Unique NameTCONS_00016205-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length249

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00016205-protein ID=TCONS_00016205-protein|Name=TCONS_00016205-protein|organism=Clytia hemisphaerica|type=polypeptide|length=249bp
MEEIEIPNEKPFDQVTEDLQSTHITDEPIELNTPVNPSDDPSLKIEQNGE
QNTEVAESKEEEIEEILSEEVKEQKHKEAITLKDEGNVLFKNAEYEKAVG
LYTQGLQTCPKCFSKTLAILYSNRAACHMKTDESEKGIEDCTQALTCDEH
YTKARIRRAQIYETTDKLDEALKDYNEVLSYDRTNKIALDAAMRLPKQIE
ERNEKLKEEMMGKLKDLGNMCLKPFGLSTENFKFQQDPKTGGYSVNFQR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009056XLOC_009056Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00016205TCONS_00016205Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom
IPR013026TPR-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 189..209
NoneNo IPR availableGENE3D1.10.150.160coord: 70..129
e-value: 2.2E-14
score: 52.8
NoneNo IPR availableGENE3D1.20.58.280coord: 171..220
e-value: 0.0057
score: 16.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..62
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 118..151
e-value: 0.0011
score: 28.3
coord: 152..185
e-value: 4.0E-4
score: 29.7
coord: 79..112
e-value: 0.38
score: 19.8
IPR019734Tetratricopeptide repeatPFAMPF13181TPR_8coord: 154..185
e-value: 0.0015
score: 18.5
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 118..151
score: 5.517
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 152..185
score: 8.909
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 79..112
score: 7.552
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 130..170
e-value: 2.6E-9
score: 36.4
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 70..207
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 79..185
score: 16.267

Blast
[Close]
BLAST of TCONS_00016205-protein vs. Swiss-Prot (Human)
Match: TTC1 (Tetratricopeptide repeat protein 1 OS=Homo sapiens GN=TTC1 PE=1 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 3.913e-69
Identity = 106/207 (51.21%), Postives = 147/207 (71.01%), Query Frame = 0 
Query:   44 KIEQNGEQNTEVAESKEE---EIEEILSEEVKEQKHKEAITLKDEGNVLFKNAEYEKAVGLYTQGLQTCPKCFSKTLAILYSNRAACHMKTDESEKGIEDCTQALTCDEHYTKARIRRAQIYETTDKLDEALKDYNEVLSYDRTNKIALDAAMRLPKQIEERNEKLKEEMMGKLKDLGNMCLKPFGLSTENFKFQQDPKTGGYSVNF 247
            K+E    ++   +E  EE   E+E+ +S+E K+++ +E+  LK+EGN  FK  +Y +A   Y++ L+ CP CF K  +IL+SNRAA  MK D+ E  I DC++A+  +  Y +A +RRA++YE TDKLDEAL+DY  +L  D +   A +A MRLPKQIEERNE+LKEEM+GKLKDLGN+ L+PFGLSTENF+ +QD  TG YS+NF
Sbjct:   78 KVENKSNEDVNSSELDEEYLIELEKNMSDEEKQKRREESTRLKEEGNEQFKKGDYIEAESSYSRALEMCPSCFQKERSILFSNRAAARMKQDKKEMAINDCSKAIQLNPSYIRAILRRAELYEKTDKLDEALEDYKSILEKDPSIHQAREACMRLPKQIEERNERLKEEMLGKLKDLGNLVLRPFGLSTENFQIKQDSSTGSYSINF 284
The following BLAST results are available for this feature:
BLAST of TCONS_00016205-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TTC13.913e-6951.21Tetratricopeptide repeat protein 1 OS=Homo sapiens... [more]
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