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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016200 ID=TCONS_00016200|Name=TCONS_00016200|organism=Clytia hemisphaerica|type=transcript|length=2042bp
TATCCTCATAGATAATTAGCAATCACCTAATTAGAAGTTAATTGTGTATG
CCACAGACAATTGATTTACTTCAAGTTCTTATCAATCAAAAAACTATGAC
TTTACATAGAACTCGTTATAAGAAAAGGAAAGAGAATTTTGATCATGAAG
TAATTTACTGAAGAGCTATTTACAattttcgaaaagttaaaaaagaaaaa
taagaattccTTGAAGTCGTTATCTTTAAGATGAGCAAGCTAAGGTTTGA
TCAATACCAATCAAGTCTTTGATATCTTTCTTGTTCATTACAGCTCTTTT
ATAAGGTTTTAAAGGCTTGCTTGGATACGTATAAGAGTAATGTCTGACCG
GTGCCTTTTGACTTGGAAAATAAAACGATTCTGGTCTAGAAATTTTACTG
TTTTTCGTCATCGGCATAAATCGTTTGTCTCTTGATAAATGGTCTTTAAA
GAACGATTTAGTGGGCGGAATGGTTGGGCGCCGATCGTAAGGTTTCGAAA
TCCGACTATGTTGAGAGTGCACCGACATTGGTATGGATTTGGGTATTTTA
GTACTCGATAACGGTGGAAGTGATGTTTTAGGAGTTAAAATGTTTGGTGT
CAACATTTTAGGTGGCAAGTTTTTAGGTGTTAAGATTTTGGGTTGAAGTG
GTTTATTTAAAGTGATTGATTTTGGTGGTTTTGAGCATTTGTGCTTCAGA
AAAACTTCTTGGGATCCAAAAGTCAGTTTACATTCTCGACAAGCGATGAT
AGGTTGGAGAAGTGAGCATCGGCCGTGGTAATTACGGTGTGAAATCCAAT
GGTGAAGATTCTCACTGGCGAAACGACAAAGTGGACAAATATATTCTGAG
TGTTCAAATTTATGTTTAGCCAATGCTGTCTTGTTATAGAATATCATATC
ACAACATGAGCACTCCATCATGGTGTGTTTGGCTCTATGCTTGTACCAAG
CTGATGCATCGTAAAATTCTTCATTGCAAAAGTCACACGGGTATGTCTCA
TGTGTATTCATGTGCTTTTTGTATTTCTTAACACAATAGAACACCGCACT
GCATTGTAGGCATTCGTGAACCACGTGGTTTGAAAGATGACGGATCAGTT
GTGAGCGTCTGTAAAACCGTTTGTTGCATTTATTACATTTGGTTTCATCA
ATTTTATCCCCTTCACtgccaagaagtttttcttccTCCAAAAGTTTAGC
TAGTTGAAAGTCACCTCGAATCAAGTCATCAGCTTTCTTAGAAGCTGATC
GTTCAGGTTTCTGTTCTGGTTCATCGCGTTCATCTGCGCTCGCTCCGCTA
CTCAAGCTACCATCATTACTTGTCTCATTCAGGTCCAAAATTTTACGCTC
TTCACGAATGTTTTGCATCAAACTTATATTATCTTTTTGTTCCAACTGTG
TTAAAAAGATTGATTTCTCGCTCAAGAAACTTTTCTCTGAGTCATTCATT
TCTCGTGGAAAGACTGGTGACAATACGTAATCATCCTCTTCGTGCTTAAT
ATCTTCTGGTGGAAGTGGAGATTGTGGCAAACTACTTGGTTTCTTAGATc
gtttcaatttcaaaacaatatcTTCCAAATTCCAAGAACATTTTCGTTTG
TTTGGAGACTGTTGGTCGTTGTTAGCAGCACctcctgatgacgtcatctc
tTCAAAATCACTTTCGTCTTCACTTGTTATTCCTTCTTCAGAGCTGTCGT
CTCCTTCGCTTTCGATTTGTGTTAATGTGGTATCTGGTGAAAGTTCAATG
TCATCAACCTTATTGATATCCTTTGTCAATGATAGACAATCAACATCTAA
GCCATCAACAACCTGTGTGTAAAGTAACAAGacaaagttttaaagaaaag
aattaaaagaaaaaaagtaaaaacaaaaaaaaatgtcggaATTTTTGTTT
TACATAAAAGACTTGGTTAGATAGAGAAGCGAAAATAGGAAGTTCCATCT
AATTACAGTTAATCTCAACTTACTTGTAAAAGAATCAAGAAAAACACCGC
CTACCCTGATAATTCTCCAAGTCGCCCCGCATGAAAAATgtc Run BLAST on NCBI transcript from alignment at sc0000231:220940..223044+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016200 ID=TCONS_00016200|Name=TCONS_00016200|organism=Clytia hemisphaerica|type=transcript|length=2105bp|location=Sequence derived from alignment at sc0000231:220940..223044+ (Clytia hemisphaerica)
TATCCTCATAGATAATTAGCAATCACCTAATTAGAAGTTAATTGTGTATG
CCACAGACAATTGATTTACTTCAAGTTCTTATCAATCAAAAAACTATGAC
TTTACATAGAACTCGTTATAAGAAAAGGAAAGAGAATTTTGATCATGAAG
TAATTTACTGAAGAGCTATTTACAattttcgaaaagttaaaaaagaaaaa
taagaattccTTGAAGTCGTTATCTTTAAGATGAGCAAGCTAAGGTTTGA
TCAATACCAATCAAGTCTTTGATATCTTTCTTGTTCATTACAGCTCTTTT
ATAAGGTTTTAAAGGCTTGCTTGGATACGTATAAGAGTAATGTCTGACCG
GTGCCTTTTGACTTGGAAAATAAAACGATTCTGGTCTAGAAATTTTACTG
TTTTTCGTCATCGGCATAAATCGTTTGTCTCTTGATAAATGGTCTTTAAA
GAACGATTTAGTGGGCGGAATGGTTGGGCGCCGATCGTAAGGTTTCGAAA
TCCGACTATGTTGAGAGTGCACCGACATTGGTATGGATTTGGGTATTTTA
GTACTCGATAACGGTGGAAGTGATGTTTTAGGAGTTAAAATGTTTGGTGT
CAACATTTTAGGTGGCAAGTTTTTAGGTGTTAAGATTTTGGGTTGAAGTG
GTTTATTTAAAGTGATTGATTTTGGTGGTTTTGAGCATTTGTGCTTCAGA
AAAACTTCTTGGGATCCAAAAGTCAGTTTACATTCTCGACAAGCGATGAT
AGGTTGGAGAAGTGAGCATCGGCCGTGGTAATTACGGTGTGAAATCCAAT
GGTGAAGATTCTCACTGGCGAAACGACAAAGTGGACAAATATATTCTGAG
TGTTCAAATTTATGTTTAGCCAATGCTGTCTTGTTATAGAATATCATATC
ACAACATGAGCACTCCATCATGGTGTGTTTGGCTCTATGCTTGTACCAAG
CTGATGCATCGTAAAATTCTTCATTGCAAAAGTCACACGGGTATGTCTCA
TGTGTATTCATGTGCTTTTTGTATTTCTTAACACAATAGAACACCGCACT
GCATTGTAGGCATTCGTGAACCACGTGGTTTGAAAGATGACGGATCAGTT
GTGAGCGTCTGTAAAACCGTTTGTTGCATTTATTACATTTGGTTTCATCA
ATTTTATCCCCTTCACtgccaagaagtttttcttccTCCAAAAGTTTAGC
TAGTTGAAAGTCACCTCGAATCAAGTCATCAGCTTTCTTAGAAGCTGATC
GTTCAGGTTTCTGTTCTGGTTCATCGCGTTCATCTGCGCTCGCTCCGCTA
CTCAAGCTACCATCATTACTTGTCTCATTCAGNTCATCGCGTTCATCTGC
GCTCGCTCCGCTACTCAAGCTACCATCATTACTTGTCTCACTCACGTCCA
AAATTTTACGCTCTTCACGAATGTTTTGCATCAAACTTATATTATCTTTT
TGTTCCAACTGTGTTAAAAAGATTGATTTCTCGCTCAAGAAACTTTTCTC
TGAGTCATTCATTTCTCGTGGAAAGACTGGTGACAATACGTAATCATCCT
CTTCGTGCTTAATATCTTCTGGTGGAAGTGGAGATTGTGGCAAACTACTT
GGTTTCTTAGATcgtttcaatttcaaaacaatatcTTCCAAATTCCAAGA
ACATTTTCGTTTGTTTGGAGACTGTTGGTCGTTGTTAGCAGCACctcctg
atgacgtcatctctTCAAAATCACTTTCGTCTTCACTTGTTATTCCTTCT
TCAGAGCTGTCGTCTCCTTCGCTTTCGATTTGTGTTAATGTGGTATCTGG
TGAAAGTTCAATGTCATCAACCTTATTGATATCCTTTGTCAATGATAGAC
AATCAACATCTAAGCCATCAACAACCTGTGTGTAAAGTAACAAGacaaag
ttttaaagaaaagaattaaaagaaaaaaagtaaaaacaaaaaaaaatgtc
ggaATTTTTGTTTTACATAAAAGACTTGGTTAGATAGAGAAGCGAAAATA
GGAAGTTCCATCTAATTACAGTTAATCTCAACTTACTTGTAAAAGAATCA
AGAAAAACACCGCCTACCCTGATAATTCTCCAAGTCGCCCCGCATGAAAA
ATgtc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016200-exon-sc0000231-1491911889:220940..222271 | TCONS_00016200-exon-sc0000231-1491911889:220940..222271 | Clytia hemisphaerica | exon |
| TCONS_00016200-exon-sc0000231-1510915933:220940..222271 | TCONS_00016200-exon-sc0000231-1510915933:220940..222271 | Clytia hemisphaerica | exon |
| TCONS_00016200-exon-sc0000231-1575043694:220940..222271 | TCONS_00016200-exon-sc0000231-1575043694:220940..222271 | Clytia hemisphaerica | exon |
| TCONS_00016200-exon-sc0000231-1491911889:222335..223044 | TCONS_00016200-exon-sc0000231-1491911889:222335..223044 | Clytia hemisphaerica | exon |
| TCONS_00016200-exon-sc0000231-1510915933:222335..223044 | TCONS_00016200-exon-sc0000231-1510915933:222335..223044 | Clytia hemisphaerica | exon |
| TCONS_00016200-exon-sc0000231-1575043694:222335..223044 | TCONS_00016200-exon-sc0000231-1575043694:222335..223044 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000231 | supercontig | sc0000231:220940..223044 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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