TCONS_00016165 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016165
Unique NameTCONS_00016165
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length487

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016165 ID=TCONS_00016165|Name=TCONS_00016165|organism=Clytia hemisphaerica|type=transcript|length=487bp
ggcctatatcACCTGAAATATCCTTTTAAGAAAGGTCTTTTAAAAGTCAT
CGCTGTACAACTCGTGATTCACGCCTCTGCGATTTGCGGAAGACTTGGAA
AACGGAAGCCCTTAAATGTTTGAGTGTCAGAATAAAGTTCAACGGTCTCA
ACAGTGAACTAGACAATATGGAAAGGGCGGATACATCTCGCATTATATGA
ATGGCCAGACAATCGCATTCTGTGCAAACATTCATGTAAATCATGGTGAA
GGTGGTCGGTAGGTATGTCGCAATGAACACAATCAGCATGATGATGAAAG
TGCGAGTAGCCTTTTGTTGTGTTTTCTGGTTCTGCTTGACTGTAGTTGTT
GGTAGCGGGCTTTTGCTGGTAATCTTTTCCTGAACTTCTTCTTTTTTGTT
CCTTGCGTCTGGTTCTGAAGCTCTCTCAACAGCACCTTGTATTGAGATTT
GATCAGCTATCGAGTACCGTTGACTATTATTGAATTG
Run BLAST on NCBI

protein sequence of TCONS_00016165-protein

>TCONS_00016165-protein ID=TCONS_00016165-protein|Name=TCONS_00016165-protein|organism=Clytia hemisphaerica|type=polypeptide|length=146bp
QFNNSQRYSIADQISIQGAVERASEPDARNKKEEVQEKITSKSPLPTTTV
KQNQKTQQKATRTFIIMLIVFIATYLPTTFTMIYMNVCTECDCLAIHIMR
DVSALSILSSSLLRPLNFILTLKHLRASVFQVFRKSQRRESRVVQR
Run BLAST on NCBI

transcript from alignment at sc0000226:18111..18597

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016165 ID=TCONS_00016165|Name=TCONS_00016165|organism=Clytia hemisphaerica|type=transcript|length=487bp|location=Sequence derived from alignment at sc0000226:18111..18597 (Clytia hemisphaerica)
CAATTCAATAATAGTCAACGGTACTCGATAGCTGATCAAATCTCAATACA
AGGTGCTGTTGAGAGAGCTTCAGAACCAGACGCAAGGAACAAAAAAGAAG
AAGTTCAGGAAAAGATTACCAGCAAAAGCCCGCTACCAACAACTACAGTC
AAGCAGAACCAGAAAACACAACAAAAGGCTACTCGCACTTTCATCATCAT
GCTGATTGTGTTCATTGCGACATACCTACCGACCACCTTCACCATGATTT
ACATGAATGTTTGCACAGAATGCGATTGTCTGGCCATTCATATAATGCGA
GATGTATCCGCCCTTTCCATATTGTCTAGTTCACTGTTGAGACCGTTGAA
CTTTATTCTGACACTCAAACATTTAAGGGCTTCCGTTTTCCAAGTCTTCC
GCAAATCGCAGAGGCGTGAATCACGAGTTGTACAGCGATGACTTTTAAAA
GACCTTTCTTAAAAGGATATTTCAGGTgatataggcc

Coding sequence (CDS) from alignment at sc0000226:18111..18597

>TCONS_00016165 ID=TCONS_00016165|Name=TCONS_00016165|organism=Clytia hemisphaerica|type=CDS|length=441bp|location=Sequence derived from alignment at sc0000226:18111..18597 (Clytia hemisphaerica)
CAATTCAATAATAGTCAACGGTACTCGATAGCTGATCAAATCTCAATACA
AGGTGCTGTTGAGAGAGCTTCAGAACCAGACGCAAGGAACAAAAAAGAAG
AAGTTCAGGAAAAGATTACCAGCAAAAGCCCGCTACCAACAACTACAGTC
AAGCAGAACCAGAAAACACAACAAAAGGCTACTCGCACTTTCATCATCAT
GCTGATTGTGTTCATTGCGACATACCTACCGACCACCTTCACCATGATTT
ACATGAATGTTTGCACAGAATGCGATTGTCTGGCCATTCATATAATGCGA
GATGTATCCGCCCTTTCCATATTGTCTAGTTCACTGTTGAGACCGTTGAA
CTTTATTCTGACACTCAAACATTTAAGGGCTTCCGTTTTCCAAGTCTTCC
GCAAATCGCAGAGGCGTGAATCACGAGTTGTACAGCGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009025XLOC_009025Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016165-exon-sc0000226-1491911889:18111..18597TCONS_00016165-exon-sc0000226-1491911889:18111..18597Clytia hemisphaericaexon
TCONS_00016165-exon-sc0000226-1510915933:18111..18597TCONS_00016165-exon-sc0000226-1510915933:18111..18597Clytia hemisphaericaexon
TCONS_00016165-exon-sc0000226-1575043694:18111..18597TCONS_00016165-exon-sc0000226-1575043694:18111..18597Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016165-proteinTCONS_00016165-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000226supercontigsc0000226:18111..18597 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.860499	0	3.82171	5.08574	7.82551	3.33066	3.36152	3.68146	0	0	2.82309	0.2333	0	0	0	0	0.123388	0	0	0	0	0	0	0	0	0.288629
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016165 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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