TCONS_00016143 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016143
Unique NameTCONS_00016143
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1261

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016143 ID=TCONS_00016143|Name=TCONS_00016143|organism=Clytia hemisphaerica|type=transcript|length=1261bp
TCCATATCGAGCATTTGAGCTCCTTTACCTGTTTGCGATACAGTATAAAA
CcgaaagataattttgataaatctttatCTATTGTATTGGTTTTGTATTT
TAATAATAGGTGatatatacaaaaaaaacaaagctaAATGCACCATTTTG
GCAGTATagaaaattgtgaaattttctCGTGTAGATACAGTTGATCACAA
TTAGACGTCAGGAAAATTACTTCTGAGATTTCTCATAACTACTttggaat
tttttgaaatacaaaCATTCAATTATTTTGTCTGTCGGCATACAACACGG
AAGATTGcatctttgacaaaaaaaaatattacatcCGATGCTATATTAAT
GGTCATTTTGATTTCGTGCTGAAAACTTGTGACGATTTTTAAAAGATGGT
TGACCATTCAGATTTGACGGATGATCAGATCGCGGAATTTCGTGAAGCGT
TCGCCTTATTTGACAAAGATGGTGATGGAACCATTTCATCCACTGAACTT
GAAACTATTTTAAAGAGCTTAGGACAGAAGCCAACACAATCAGAGTTGAG
AGATATGATCAATGAGGTGGATGCTGATGGAAATGGAACAGTGGATTTCA
GTGAATTCTTAACCATGATGGCTACCAAGAATAAAGGATCCAGTGCTGAT
GATGAAATTAAAGAGGCGTTCAGTATTTTTGACAAAGACGGTAACGGCAA
GATCAGTGCAGACGAGTTGAAGAATGTGATGATAAATCTTGGTGAGAAAT
TAACCGATGAAGAACTGGATGAAATGATTAGAGAAGCAGACATCGATGGT
GATGGAGAGGTCAACTATGAAGaATTCGTCAAGATGATGTCTGCTGGGAC
TTAAAAGTGAAATGACATTTTAAAGAAAAGTATTCCAAATgtacattttt
atataataattcAACCAGCTATCAGTCGATATGACCAATTGGATTGACTG
TACGGTCACTTCCTATTGATGTTAATCTGGAACAAAAAATCGCAGGGATC
CAGATCTTGGCTTCGCGTATACAAGGAGGATTTGACATTGTCTTGGGTTA
TTATAAAGAACTTTTAGTTATTTTTAGTCTAACcataataattttgaaat
agttgacatattgtatatttatttcaaataatattttgcAAATTGTAGAA
ATATGGTATTTGAATTGATCTATCAAAACAAAGTACCAAACCAAATTATC
AAGGTGAAGctacaattttcttttttttattgagagtACATTGCATGCAA
CTTAGTCAAGC
Run BLAST on NCBI

transcript from alignment at sc0000226:241075..247100-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016143 ID=TCONS_00016143|Name=TCONS_00016143|organism=Clytia hemisphaerica|type=transcript|length=6026bp|location=Sequence derived from alignment at sc0000226:241075..247100- (Clytia hemisphaerica)
TCCATATCGAGCATTTGAGCTCCTTTACCTGTTTGCGATACAGTATAAAA
CCGAAAGATAATTTTGATAAATCTTTATCTATTGTATTGGTTTTGTATTT
TAATAATAGGTGATATATACAAAAAAAACAAAGCTAAATGCACCATTTTG
GCAGTATAGAAAATTGTGAAATTTTCTCGTGTAGATACAGTTGATCACAA
TTAGACGTCAGGAAAATTACTTCTGAGATTTCTCATAACTACTTTGGAAT
TTTTTGAAATACAAACATTCAATTATTTTGTCTGTCGGCATACAACACGG
AAGATTGCATCTTTGACAAAAAAAAATATTACATCCGATGCTATATTAAT
GGTCATTTTGATTTCGTGCTGAAAACTTGTGACGATTTTTAAAAGATGGT
AAGAAATATTATTAATTTATTGGAAGGCAAAAATTATCCAATATTCCAAT
ACAGCAATAGCTTTTTTGGGCGTTTCTCTATCGCGAAAGCGCCAAATAAA
GGCTTGGGGACACGAGAAGTTTTTTTCACGTTGGTGCAATGCAACATGCT
CCGTTCCACCAACACACAAAAAAAGTGCGTGTCCCATGGTTTGTTTTTTT
GTTTCATTGGACAAAAAGTGAGAGGAATACCCAAAAGACAGGCTGATTTT
GTCCCTGGGACACTTTTATTGGTAGAAAGAAAAATGGGATGGTGACACAA
GAAAGTGTTTTAGGTTGGTGGGATGGAGCATGTTGCATTGCAATAAGGCG
AAAAAAACTTCTCGTGTCCCCAAGCCTTTATTCTTACTTTTGGTACCATA
ATATGATAATCATCTCTCCTAGCTCCCGTCGAGGTACACGTTTTCTATAA
GAACAAACTATATAAGAACATAAGGCTGCGATGACCAAAAGTTAAGAACA
ATAAGTTTAAAACATTTTAAGGCTTTGGAGACTCTAAAACATCCGATTTC
TTAGGAAAATAGACCAAAATGCTCACAAAATGGCTTAAAATTCAAAAAGT
TAAGATTCCAAGGAACTTGAATAAAAAGTTTCTTGATCATCCGAAGGCTT
CAAAAATTGATTTATTCATCTTATGAAAAACATGTAACACGAAAACAGAT
TGTTATTGTTATTGTCTCAGGTTGAAGTGCTGAAAGGGTGTAATGTGGCG
GAATATGGGCACTATTGGTAGGGAAGGAGCATGAATCCAAACTCTACCCA
GAAAAAGTCATCTTTAACATTTTTAAGGTGCAGGTTCCTTAATAATCATG
CGCATTTTTGACTGGACACTATTCTACAGACTCTGCTACCCTATCTCGTA
CACACAGAGCTCCTCAGATACATTGAAATAAGCATTTCTAAGTGATCCAT
TTACTCGTCATCTTTATTTTTCTTCTTCGATTTTTGATTTTATATAAATC
TTTTATTTTTTAGCATAGTCCGTATAAAAAACTCTGGAAGCCTTTTGTTT
ATTTCCATTGTTTCTTACTTGAACTACGTAAGTTCAAGTTCAAATTAGTT
TGTTTTGCTCACTTTTTGATCATGTGATTAAATCTTAAACCAATCCCAAG
AGGAGTACTTGGTAACGTGATCAAAAACTGAGCAAATCGATTTTCATCTT
TTGATGATAGCAAAGGAAGAAATAACAAAAATTTAAAACAATAAACTTCC
AGACCAGTGTTTTTTATATGGACTATGCTTTTAGATAATTCTAGACAAGA
ATTGCTTGAAATTGAGTAATTCCAAGCTCAGCATTTTCTTTTAGAAATTC
TTCTTATTTTTTTGGCGATTTTGAGCCTCATTGTTCTTATAAAAAATAAG
TGTAGTTAGAAATAGACACCCATATTCCAATGATATCCAAATTTGATTGA
AATGATCCGCATAAAAGTTTTTTTATAAGAATATTAGCTAAAATTTGGTC
TTAAACTAACATCAAACTAAAAACTAAGAATTATTAATTAAGAAACCCTT
TATCTTTTATCATTTTTTAAGGAAGGATCCTAAGAACATACACTGAAATA
TTCCGTGAAACCTGATGAAACTAAGAATCGCCTAATGAGTCCAAAACTTA
CTTGATTCTTATAAAGAAATGCACGCTTAATCGTGTTTCAGAAAACAATA
TACGTTAAGATTGATAGTTTAGATATATAGTCTCTCAATCTCAATCAAAC
ATTGTCGGATATACTTTTTTCGCCATATCAAGTACATAGAGAATAATAAA
TCAGCAAAATATCAATTTTTATTTTATTATTGTATAAATATTGAGTTGCC
TCCATCCCTACCAGGCGTGGTTTAAAGTGATTGCATAAATTTTGATGAAG
GGTGGTCTCTTTTGTTCCATACATAGTCCTTATATAGAAAATTTACGCTC
CCCCGCAAATTATAAAAGCTACTCTACATGTATCCCTTCCTAGATCAAAA
CCTTTTTATAAGCATGATGTTTTTAAAACAGGGGTATCGTACAATATATC
TTTTGTTAAAAAGACAATATTTCGGGGCAGAACGAGGTCGACATACTTGA
TTCTTATAAAAAGAGATCAATCTTTAAACATCTGTTAATGGATGGTCGTT
GTCTCCACTCTGAAATCTAACTATCAGGTTCTTTTGGGCGTCTACCAGCG
AAAGTAATTTTTGAACAATATTGAAACTGTTTTGCTCTCGAGAAGAACGA
CTGTTTTAGTCTCAGTGGGGTAGATTTTTGAGAAAATGTCCGTTATGGAT
TTGTATGAAATTGTTAAATTAGAAAGATTGATGAAAAATCTGTTACGAAA
ATCAAAAAGAATTCCAGTCACTAAATCTGACGATGTAAGTCATAATTCAA
GAGTAGTTTATCATGCTGAAAGGAAAACAAGGGATTGCGCGAATTAGGCA
GCTTTGCTTTTTCCAGGTGGCTAGTGTGCTGGATTTCATTTTGTACAAGA
TTTTACTTTTATCCGGCGGTGGCGACCCATACAAAGAAGCCCGTAAAGGA
AAAAACTGTCTAAAACATCAGAAGATGAGCTCCCAGACCCCTTATTTTTT
GGCAATATTTTACGAGTATGAGATTAAAAACTATAGCCCCTCTTCTTCTT
TTTGTGTTTCAGGTTGACCATTCAGATTTGACGGATGATCAGATCGCGGA
ATTTCGTGAAGCGTTCGCCTTATTTGACAAAGATGGTGATGGAACCATTT
CATCCACTGAACTTGAAACTATTTTAAAGGTGCGTTCTGATATACTATTT
TGTGACACGAGGTTCAATTAAACTTCCAGAGCAAATTACCAACAACGATA
CAAGCCTCAGATTCTAAAACGTTAAAGCTAAGAAAAAGCCTCTCCAGTCC
GAATGATCTCTTGTTCAGTCCATATGAAAAATATGAAAGGATAATAAGAA
CAGCCCATGGGATGACGTACAGAACATACAGGTAACAACATTGTAACAAC
GATAGATTCAAAGTGCTACGTGGCTGTTGGTGCGAGTTTTTTCAGATAGC
TTTTAGTCACAGTGTATTCCATTACCAGATAAAAGAGGATTGGGTAAATA
ATGAGAGAACTCCGTCACGGGAATATTTTTTTAGACGTTTATCTTCTGGA
TCACGGCTTTCATTCAGCTTGAAATGAAATATTAAACCTTTAAAGTTACT
AAAATATTTCTTAGTAGAACTGTCGATCTTATCCCAGCTAGCACACAACG
TTGTTTTAACGTTCATCTAACGTTATATGGACGTTGTGAACGTTAGATAA
AAGTTGACACAACGTTGTGTGTCAGCTGGGATGGGCCAAGATTATACATT
TATGCAATGTTCTTACATTTTTTCTCCAGAGCTTAGGACAGAAGCCAACA
CAATCAGAGTTGAGAGATATGATCAATGAGGTGGATGCTGATGGAAATGG
AACAGTGGATTTCAGTGAATTCTTAACCATGATGGCTACCAAGAATAAAG
GATCCAGTGCTGATGATGAAATTAAAGAGGTTTGTATGTCCAATCTAAGA
TAAATGATTCGTCATATCCTTAATTTAAACAATAAAATTAATGGCAAAAG
CCCGAGCTTTTTTGAGTGCTTTCACTAAAACATTACGACACGAGCATTAA
CAAAACATTAAAAAAAATTCTCGGAAAATTGTGGGTTTGCTAAGTCTTTT
CTGACGTCACTATCTATCTGCGGCAAAAAGATTTTACCATTTTTTCATTA
ATAACTCGTCATCTAAAATAGATAATTTGAATTCCTTTTCAACACTATTA
TTCACAGGCGTTCAGTATTTTTGACAAAGACGGTAACGGCAAGATCAGTG
CAGACGAGTTGAAGAATGTGATGATAAATCTTGGTGAGAAATTAACCGAT
GAAGAACTGGATGAAATGATTAGAGAAGCAGACATCGATGGTGATGGAGA
GGTCAACTATGAAGGTCAGTATTCTTGAATTCGTGTGAAAAGATGTTGAG
GTCATCAAACATCAGAGCTAGTCAGGAAAAATTCATAACTAACTAATTGA
CTCCCTCAAAGGGTCATAAATTATTGAAATTTGGACTAAAACTTGAAAAC
TTTGCCTGAAACTTTGGGGAAAAAGTCTCTTTAAGGGTGAAAAAAACGTT
AAAAAATGGACAGACTTTTCTATAGGTTTCTCTAAGGGTCGATTTTAGGA
ATATGACGTACCCGTCATCTCGAAAACCTAGTAACCCCCTCCCAGGAAAG
ATGCTGCCCAGCTGGCACAGAAACGTTGTTTTAACATTCATCAAATTTTA
CATGAGCGTTAAGCTAAGGCTACACTGATAGATAGTTTTTTCAGGCAGCT
GCAATGCAATTAACGTTGCGTTGCAAGCGCGCGAAAATTGCAAAATGTAG
CACGTCAATTTTTTCTCCAATTGCTCTGCAACGCAATAAAAATATTGCAG
AACATATTGCAAGTGTCTGCAACAAAACTGTTTTTTTGACGTTTTTCCTG
CTTCCTTTTTTTAGATGGCTAGAAAGCAACAATTTTCAGGCGGCTGCAAT
GCAACAATTGCATTGCAGCCGCCTGAAAAAACTATCACTGTAACCTTAGC
TTTAGATGGACGTAGGTTGTTGTGACGTTCTGTGCCAGCTGGATGAGGGC
TAGTCAGGAAAAGATCCTTGTAAAAACAGCACGATCACGAAAATATTTTG
ATATTGACTGAAAACTGCTAATTCTAAGGTGGTAAAAGGCATAGAAGCAC
CGAAATTTGTAAGAACGAACAAGATTCAGTACTTAAATACACAAGTCTGA
AAATTTCCCTTAAATTTCTCTATTCTCGTGACCACTGAAGAATCTGGAAG
ATCCAATATTCCCCAATATAATGAATATGAAAGTGCTACCAAATGTCTAA
ACGTGTGTTGTGTGATTTGGACTATTTTTATTATAGTGCACACTGAAAAA
CTTTTGATGACTTTGGCGATAAAGGGTGGAGGCGTAAGAGTTTGCAGGGT
TTTTACGTTTCATCAAATATCGAAAATTGATCGATCTGATTTGGATTGAG
GGCATAAATATGACCATTTTTTAACAGAACTGAATGCTAGTCAGGTTTTT
CTTTGAAAATTGCACGTATTACGATAAAATCACTAGGATTATCTTCAGCA
TCAACTTTATAAAGCCGTCTTTATTTTTTTAATTCAGAATTCGTCAAGAT
GATGTCTGCTGGGACTTAAAAGTGAAATGACATTTTAAAGAAAAGTATTC
CAAATGTACATTTTTATATAATAATTCAACCAGCTATCAGTCGATATGAC
CAATTGGATTGACTGTACGGTCACTTCCTATTGATGTTAATCTGGAACAA
AAAATCGCAGGGATCCAGATCTTGGCTTCGCGTATACAAGGAGGATTTGA
CATTGTCTTGGGTTATTATAAAGAACTTTTAGTTATTTTTAGTCTAACCA
TAATAATTTTGAAATAGTTGACATATTGTATATTTATTTCAAATAATATT
TTGCAAATTGTAGAAATATGGTATTTGAATTGATCTATCAAAACAAAGTA
CCAAACCAAATTATCAAGGTGAAGCTACAATTTTCTTTTTTTTATTGAGA
GTACATTGCATGCAACTTAGTCAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009018XLOC_009018Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016143-exon-sc0000226-1575043694:246703..247100TCONS_00016143-exon-sc0000226-1575043694:246703..247100Clytia hemisphaericaexon
TCONS_00016143-exon-sc0000226-1575043694:243922..244038TCONS_00016143-exon-sc0000226-1575043694:243922..244038Clytia hemisphaericaexon
TCONS_00016143-exon-sc0000226-1575043694:243172..243321TCONS_00016143-exon-sc0000226-1575043694:243172..243321Clytia hemisphaericaexon
TCONS_00016143-exon-sc0000226-1575043694:242737..242893TCONS_00016143-exon-sc0000226-1575043694:242737..242893Clytia hemisphaericaexon
TCONS_00016143-exon-sc0000226-1575043694:241075..241513TCONS_00016143-exon-sc0000226-1575043694:241075..241513Clytia hemisphaericaexon
TCONS_00016143-exon-sc0000226-1510915933:246703..247100TCONS_00016143-exon-sc0000226-1510915933:246703..247100Clytia hemisphaericaexon
TCONS_00016143-exon-sc0000226-1510915933:243922..244038TCONS_00016143-exon-sc0000226-1510915933:243922..244038Clytia hemisphaericaexon
TCONS_00016143-exon-sc0000226-1510915933:243172..243321TCONS_00016143-exon-sc0000226-1510915933:243172..243321Clytia hemisphaericaexon
TCONS_00016143-exon-sc0000226-1510915933:242737..242893TCONS_00016143-exon-sc0000226-1510915933:242737..242893Clytia hemisphaericaexon
TCONS_00016143-exon-sc0000226-1510915933:241075..241513TCONS_00016143-exon-sc0000226-1510915933:241075..241513Clytia hemisphaericaexon
TCONS_00016143-exon-sc0000226-1491911889:246703..247100TCONS_00016143-exon-sc0000226-1491911889:246703..247100Clytia hemisphaericaexon
TCONS_00016143-exon-sc0000226-1491911889:243922..244038TCONS_00016143-exon-sc0000226-1491911889:243922..244038Clytia hemisphaericaexon
TCONS_00016143-exon-sc0000226-1491911889:243172..243321TCONS_00016143-exon-sc0000226-1491911889:243172..243321Clytia hemisphaericaexon
TCONS_00016143-exon-sc0000226-1491911889:242737..242893TCONS_00016143-exon-sc0000226-1491911889:242737..242893Clytia hemisphaericaexon
TCONS_00016143-exon-sc0000226-1491911889:241075..241513TCONS_00016143-exon-sc0000226-1491911889:241075..241513Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000226supercontigsc0000226:241075..247100 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	11.043	14.6834	53.872	53.1127	28.5027	39.7544	31.0462	26.1374	0.0765986	0.205505	5.39582	5.48878	45.521	38.0799	34.2154	34.0848	7.4628	8.16777	2.67304	10.9739	0.341383	0.148053	0	0
Blast
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BLAST of TCONS_00016143 vs. Swiss-Prot (Human)
Match: CALM3 (Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 1.467e-71
Identity = 107/144 (74.31%), Postives = 132/144 (91.67%), Query Frame = 3 
Query:  414 LTDDQIAEFREAFALFDKDGDGTISSTELETILKSLGQKPTQSELRDMINEVDADGNGTVDFSEFLTMMATKNKGSSADDEIKEAFSIFDKDGNGKISADELKNVMINLGEKLTDEELDEMIREADIDGDGEVNYEEFVKMMSA 845
            LT++QIAEF+EAF+LFDKDGDGTI++ EL T+++SLGQ PT++EL+DMINEVDADGNGT+DF EFLTMMA K K + +++EI+EAF +FDKDGNG ISA EL++VM NLGEKLTDEE+DEMIREADIDGDG+VNYEEFV+MM+A
Sbjct:    5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 148
The following BLAST results are available for this feature:
BLAST of TCONS_00016143 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CALM31.467e-7174.31Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1[more]
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