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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016109 ID=TCONS_00016109|Name=TCONS_00016109|organism=Clytia hemisphaerica|type=transcript|length=2212bpRun BLAST on NCBI protein sequence of TCONS_00016109-protein >TCONS_00016109-protein ID=TCONS_00016109-protein|Name=TCONS_00016109-protein|organism=Clytia hemisphaerica|type=polypeptide|length=710bp MNIPVSSKALYRALNRTVLHGRSTQRITCMCTQLQATEETRTNHANIQMLRun BLAST on NCBI transcript from alignment at sc0000226:302..26196- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016109 ID=TCONS_00016109|Name=TCONS_00016109|organism=Clytia hemisphaerica|type=transcript|length=25895bp|location=Sequence derived from alignment at sc0000226:302..26196- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000226:302..26196- >TCONS_00016109 ID=TCONS_00016109|Name=TCONS_00016109|organism=Clytia hemisphaerica|type=CDS|length=23463bp|location=Sequence derived from alignment at sc0000226:302..26196- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00016109 vs. Swiss-Prot (Human)
Match: DPOG1 (DNA polymerase subunit gamma-1 OS=Homo sapiens GN=POLG PE=1 SV=1) HSP 1 Score: 423.32 bits (1087), Expect = 1.619e-131 Identity = 248/770 (32.21%), Postives = 387/770 (50.26%), Query Frame = 2
Query: 152 ETRTNHANIQMLSENLHSQIFKNTKPQTLSEEALSRVKQHLIKHGLWDKTSSKAEPLTIDLPKMLGNNIGEHFEGIAKERTKNYFAFAEHMSNSITSIPEKPTQWLYQSGWTKYETDGTVKTVKYPDENVIIFDVEVCMKAGNVPILATAVSKNAWYCWVSHYLTDEECHIPQDITPDSMIPM---SGEDLS-----KEKLLIGHNVAFDRSFVKEVYHLNDNGMRFLDTLSLHVCVSGVTNEQRNYM-----------------------NQKNPA-SVYEWMNHGSTNSLAKLYEFYCH-KTLDKSTRDLFVEGNLQDIRESFQECVNYCALDVKSTFEIYQMMWPDFLVHVPSPVSFCGMLEMGTSFLPITRSWKEYIQRSEEMFEKITSELKESLMDVAEDTLKLMIDDRYKENLWTWNMNWSIH----------------------KTARPPADFVQNN-----TPQKNVLQTIAERIDHLSDKRKTQL------HMSGYPKWYRELCVKTKKDESVGNEEQRKPVRPVNISSQKQVTPYLLQMTWDGYPLHYEQKHGWGFLAP-MKTQMHHLKTNVLEKEKKTGFPYRVF--------MEFIKQRKEDREEDLAKLQLF---------------------SQCDDMNGIDIGLP------------------------------CIRFFKLPHKNGDNFNVGNPLAKDFLSKIEDGTL-ATSGNFNAKLPIELNKMLSFWRNGRKRICTQMAIWLDDNEKELAV 2080
+ R N +IQMLS LH QIF + E A+ R +HL KHGLW + + + + LP + G+N+ +HF +A++++ Y A + + +P KP W + GWT+Y +G V P+E ++FDVEVC+ G P LA A+S +AWY W S L +E ++P +IP+ +G +E+L++GHNV+FDR+ ++E Y + + MRFLDT+S+H+ +SG+++ QR+ ++ PA S ++W++ S NSLA+++ Y L+K R+LFV+G ++DIRE+FQ+ + YCA DV +T E++Q P FL P PV+ GMLEMG S+LP+ ++W+ Y+ ++ +E++ E+K+SLMD+A D +L+ +RYKE+ W W++ W + + A P D + + ++ Q + R K T+L H+ G+P WYR+LC + P +S Q +VTP L+ +TWDG+PLHY ++HGWG+L P + + L T + PYR +E KQ+ +E LA+ L ++ +++ G P C F KLPHK+G++ NVG+P AKDFL K+EDGTL A G + +E+NKM+SFWRN KRI +QM +WL + AV
Sbjct: 68 QLRHNPLDIQMLSRGLHEQIFGQGG-EMPGEAAVRRSVEHLQKHGLWGQPAVPLPDVELRLPPLYGDNLDQHFRLLAQKQSLPYLEAANLLLQA--QLPPKPPAWAWAEGWTRYGPEGEAVPVAIPEERALVFDVEVCLAEGTCPTLAVAISPSAWYSWCSQRLVEERYSWTSQLSPADLIPLEVPTGASSPTQRDWQEQLVVGHNVSFDRAHIREQYLIQGSRMRFLDTMSMHMAISGLSSFQRSLWIAAKQGKHKVQPPTKQGQKSQRKARRGPAISSWDWLDISSVNSLAEVHRLYVGGPPLEKEPRELFVKGTMKDIRENFQDLMQYCAQDVWATHEVFQQQLPLFLERCPHPVTLAGMLEMGVSYLPVNQNWERYLAEAQGTYEELQREMKKSLMDLANDACQLLSGERYKEDPWLWDLEWDLQEFKQKKAKKVKKEPATASKLPIEGAGAPGDPMDQEDLGPCSEEEEFQQDVMARACLQKLKGTTELLPKRPQHLPGHPGWYRKLCPRLDDPAWTPG--------PSLLSLQMRVTPKLMALTWDGFPLHYSERHGWGYLVPGRRDNLAKLPTGTTLESAGVVCPYRAIESLYRKHCLEQGKQQLMPQEAGLAEEFLLTDNSAIWQTVEELDYLEVEAEAKMENLRAAVPGQPLALTARGGPKDTQPSYHHGNGPYNDVDIPGCWFF-KLPHKDGNSCNVGSPFAKDFLPKMEDGTLQAGPGGASGPRALEINKMISFWRNAHKRISSQMVVWLPRSALPRAV 825 The following BLAST results are available for this feature:
BLAST of TCONS_00016109 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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