TCONS_00016109-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00016109-protein
Unique NameTCONS_00016109-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length710

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00016109-protein ID=TCONS_00016109-protein|Name=TCONS_00016109-protein|organism=Clytia hemisphaerica|type=polypeptide|length=710bp
MNIPVSSKALYRALNRTVLHGRSTQRITCMCTQLQATEETRTNHANIQML
SENLHSQIFKNTKPQTLSEEALSRVKQHLIKHGLWDKTSSKAEPLTIDLP
KMLGNNIGEHFEGIAKERTKNYFAFAEHMSNSITSIPEKPTQWLYQSGWT
KYETDGTVKTVKYPDENVIIFDVEVCMKAGNVPILATAVSKNAWYCWVSH
YLTDEECHIPQDITPDSMIPMSGEDLSKEKLLIGHNVAFDRSFVKEVYHL
NDNGMRFLDTLSLHVCVSGVTNEQRNYMNQKNPASVYEWMNHGSTNSLAK
LYEFYCHKTLDKSTRDLFVEGNLQDIRESFQECVNYCALDVKSTFEIYQM
MWPDFLVHVPSPVSFCGMLEMGTSFLPITRSWKEYIQRSEEMFEKITSEL
KESLMDVAEDTLKLMIDDRYKENLWTWNMNWSIHKTARPPADFVQNNTPQ
KNVLQTIAERIDHLSDKRKTQLHMSGYPKWYRELCVKTKKDESVGNEEQR
KPVRPVNISSQKQVTPYLLQMTWDGYPLHYEQKHGWGFLAPMKTQMHHLK
TNVLEKEKKTGFPYRVFMEFIKQRKEDREEDLAKLQLFSQCDDMNGIDIG
LPCIRFFKLPHKNGDNFNVGNPLAKDFLSKIEDGTLATSGNFNAKLPIEL
NKMLSFWRNGRKRICTQMAIWLDDNEKELAVSYTKVTKISSKRTIPLVKS
KNINKKTCRV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009006XLOC_009006Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00016109TCONS_00016109Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002297DNA-dir_DNA_pol_A_mt
IPR0025623'-5'_exonuclease_dom
IPR012337RNaseH-like_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005760gamma DNA polymerase complex
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:00084083'-5' exonuclease activity
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0006260DNA replication
GO:0006139nucleobase-containing compound metabolic process
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006260 DNA replication
biological_process GO:0006139 nucleobase-containing compound metabolic process
cellular_component GO:0005760 gamma DNA polymerase complex
molecular_function GO:0008408 3'-5' exonuclease activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002297DNA-directed DNA-polymerase, family A, mitochondriaPRINTSPR00867DNAPOLGcoord: 99..111
score: 56.04
coord: 353..362
score: 44.29
coord: 234..248
score: 60.95
IPR0025623'-5' exonuclease domainPFAMPF01612DNA_pol_A_exo1coord: 219..353
e-value: 1.2E-4
score: 21.7
IPR012337Ribonuclease H-like domainGENE3D3.30.420.10coord: 142..356
e-value: 1.0E-23
score: 83.0
IPR012337Ribonuclease H-like domainSUPERFAMILY53098Ribonuclease H-likecoord: 164..355

Blast
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BLAST of TCONS_00016109-protein vs. Swiss-Prot (Human)
Match: DPOG1 (DNA polymerase subunit gamma-1 OS=Homo sapiens GN=POLG PE=1 SV=1)

HSP 1 Score: 424.091 bits (1089), Expect = 1.809e-133
Identity = 248/770 (32.21%), Postives = 387/770 (50.26%), Query Frame = 0 
Query:   39 ETRTNHANIQMLSENLHSQIFKNTKPQTLSEEALSRVKQHLIKHGLWDKTSSKAEPLTIDLPKMLGNNIGEHFEGIAKERTKNYFAFAEHMSNSITSIPEKPTQWLYQSGWTKYETDGTVKTVKYPDENVIIFDVEVCMKAGNVPILATAVSKNAWYCWVSHYLTDEECHIPQDITPDSMIPM---SGEDLS-----KEKLLIGHNVAFDRSFVKEVYHLNDNGMRFLDTLSLHVCVSGVTNEQRNYM-----------------------NQKNPA-SVYEWMNHGSTNSLAKLYEFYCH-KTLDKSTRDLFVEGNLQDIRESFQECVNYCALDVKSTFEIYQMMWPDFLVHVPSPVSFCGMLEMGTSFLPITRSWKEYIQRSEEMFEKITSELKESLMDVAEDTLKLMIDDRYKENLWTWNMNWSIH----------------------KTARPPADFVQNN-----TPQKNVLQTIAERIDHLSDKRKTQL------HMSGYPKWYRELCVKTKKDESVGNEEQRKPVRPVNISSQKQVTPYLLQMTWDGYPLHYEQKHGWGFLAP-MKTQMHHLKTNVLEKEKKTGFPYRVF--------MEFIKQRKEDREEDLAKLQLF---------------------SQCDDMNGIDIGLP------------------------------CIRFFKLPHKNGDNFNVGNPLAKDFLSKIEDGTL-ATSGNFNAKLPIELNKMLSFWRNGRKRICTQMAIWLDDNEKELAV 681
            + R N  +IQMLS  LH QIF     +   E A+ R  +HL KHGLW + +     + + LP + G+N+ +HF  +A++++  Y   A  +  +   +P KP  W +  GWT+Y  +G    V  P+E  ++FDVEVC+  G  P LA A+S +AWY W S  L +E       ++P  +IP+   +G         +E+L++GHNV+FDR+ ++E Y +  + MRFLDT+S+H+ +SG+++ QR+                          ++ PA S ++W++  S NSLA+++  Y     L+K  R+LFV+G ++DIRE+FQ+ + YCA DV +T E++Q   P FL   P PV+  GMLEMG S+LP+ ++W+ Y+  ++  +E++  E+K+SLMD+A D  +L+  +RYKE+ W W++ W +                       + A  P D +        + ++   Q +  R      K  T+L      H+ G+P WYR+LC +                 P  +S Q +VTP L+ +TWDG+PLHY ++HGWG+L P  +  +  L T    +      PYR          +E  KQ+   +E  LA+  L                      ++ +++     G P                              C  F KLPHK+G++ NVG+P AKDFL K+EDGTL A  G  +    +E+NKM+SFWRN  KRI +QM +WL  +    AV
Sbjct:   68 QLRHNPLDIQMLSRGLHEQIFGQGG-EMPGEAAVRRSVEHLQKHGLWGQPAVPLPDVELRLPPLYGDNLDQHFRLLAQKQSLPYLEAANLLLQA--QLPPKPPAWAWAEGWTRYGPEGEAVPVAIPEERALVFDVEVCLAEGTCPTLAVAISPSAWYSWCSQRLVEERYSWTSQLSPADLIPLEVPTGASSPTQRDWQEQLVVGHNVSFDRAHIREQYLIQGSRMRFLDTMSMHMAISGLSSFQRSLWIAAKQGKHKVQPPTKQGQKSQRKARRGPAISSWDWLDISSVNSLAEVHRLYVGGPPLEKEPRELFVKGTMKDIRENFQDLMQYCAQDVWATHEVFQQQLPLFLERCPHPVTLAGMLEMGVSYLPVNQNWERYLAEAQGTYEELQREMKKSLMDLANDACQLLSGERYKEDPWLWDLEWDLQEFKQKKAKKVKKEPATASKLPIEGAGAPGDPMDQEDLGPCSEEEEFQQDVMARACLQKLKGTTELLPKRPQHLPGHPGWYRKLCPRLDDPAWTPG--------PSLLSLQMRVTPKLMALTWDGFPLHYSERHGWGYLVPGRRDNLAKLPTGTTLESAGVVCPYRAIESLYRKHCLEQGKQQLMPQEAGLAEEFLLTDNSAIWQTVEELDYLEVEAEAKMENLRAAVPGQPLALTARGGPKDTQPSYHHGNGPYNDVDIPGCWFF-KLPHKDGNSCNVGSPFAKDFLPKMEDGTLQAGPGGASGPRALEINKMISFWRNAHKRISSQMVVWLPRSALPRAV 825
The following BLAST results are available for this feature:
BLAST of TCONS_00016109-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DPOG11.809e-13332.21DNA polymerase subunit gamma-1 OS=Homo sapiens GN=... [more]
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