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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016078 ID=TCONS_00016078|Name=TCONS_00016078|organism=Clytia hemisphaerica|type=transcript|length=1476bp
tttttatttttcgattgtAGATCATGGTGTACCTCAAAACTGTCGTTTTG
TTGGCCGTTATTGCAGTTTATCAAATCTCCAGTCAAAATAATGTTCCCAT
CAGGGCATCAAAGGAAACCTTAGAGAAGATTGATGGAGAACTCAGGAACA
AAATTGCAGAAGAGAGGGGTAATTTACGTTTAGCAGCTGGGTTTGTGCGG
TTATCATTTCACGATTGTGTTGGCGAAGGTCGATGTGATGGATGTATCGA
TTCTGGCAATCCTGATAACAACGGCTTGCAACGGTATATTGATGTTCTAA
ACGGAGTATACAATGATCACAAAGATGAAATCACTAGAGCTGACTTGTTT
GCTTTTGCCGGAGTCGTTGCAGCTAATGAAGCTTCAAGAGAAGATGCACA
ATTCGATATGAGCCGTTTCAAGGTTGGCAGAGCTGACTGCAGTTCAGATG
GACAGGAAAATGATCCAAATGAGCATTTCCCCGGTAACAATATGCAGAAT
CTTGGTGAAGTCACCAAGTTCTTTAATGCCGCTTTCGGTCTTAATGAACA
AGAAAGCGTCGCTTTAATGGGAGCTCACAGTCTTGGTCGAATGGAGACAA
GGAACTCTGGTTACGAAGGTCCATGGGTGAATAATATCGAGCGCTTGGAT
AGTGCCTATTATCAAGAAGTTGCCGAAAGAAGATGGTTCTTGAAAGTGAT
GCCAGAGAGTAATGGTCAAAAACATCAATGGGAAAGAAGGGGACCTACTG
GAGGATCTGGAAATAGAGAAGGCGGAAATCCAGGAGCTAAAGCTCTTTTG
AGTACTGATGGGGCCATTGCTTTCAATATGCACTTGAACCAAGAATCGGG
TGCCTTCCTTGATAACCAAGAATGCTCAATGTGTGGTGTTGCCAACAATC
CACCAAGATGAGAACCAGAATGTTGTGAAAAGAATTCTGGTTATAATATC
TGTCGTGAATACTCCGCCAACAATCCACAATGGATGAATGATTTTGCAGG
TGCGTTTTACAAAATGATTGATAGTCAACAAACCAATTTGTCGTCACCTG
TTTCTGTAACAACCACTGATGCACCCACACCAAGACCTACCAAAGCACCA
AAACCAGGCAGAAAGCCTGGCAAGAAAGGTAAGAAAGGAAAGAAGCGACA
GGATTCATTTCACACCAAGAAATCACACAATGATGCCAAAAGCAACCGCA
TCAGACACCGAATTCAAAAGTTGATGAAAGAGTTAAGAGAAGTCAGTGAT
CAggtcaagaaaatgaaaaattactaagAACATTTTCAACAAATGAAGAA
AGTTTATTAtcatatttgataaaatattttcaactaatTTCTGTTACACA
CTGTTGCAATTTTAACTgtaattttatgcattttaaTACGTATTTCATTA
TCTTTTCACTTTATTAATAACAATATATGTCTTTGTAGTCATAGAAACAC
AAACTGCAATAAAtttattcatgaaa Run BLAST on NCBI protein sequence of TCONS_00016078-protein >TCONS_00016078-protein ID=TCONS_00016078-protein|Name=TCONS_00016078-protein|organism=Clytia hemisphaerica|type=polypeptide|length=295bp
MVYLKTVVLLAVIAVYQISSQNNVPIRASKETLEKIDGELRNKIAEERGN
LRLAAGFVRLSFHDCVGEGRCDGCIDSGNPDNNGLQRYIDVLNGVYNDHK
DEITRADLFAFAGVVAANEASREDAQFDMSRFKVGRADCSSDGQENDPNE
HFPGNNMQNLGEVTKFFNAAFGLNEQESVALMGAHSLGRMETRNSGYEGP
WVNNIERLDSAYYQEVAERRWFLKVMPESNGQKHQWERRGPTGGSGNREG
GNPGAKALLSTDGAIAFNMHLNQESGAFLDNQECSMCGVANNPPR Run BLAST on NCBI transcript from alignment at sc0000225:315684..317159 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016078 ID=TCONS_00016078|Name=TCONS_00016078|organism=Clytia hemisphaerica|type=transcript|length=1476bp|location=Sequence derived from alignment at sc0000225:315684..317159 (Clytia hemisphaerica)
tttcatgaataaaTTTATTGCAGTTTGTGTTTCTATGACTACAAAGACAT
ATATTGTTATTAATAAAGTGAAAAGATAATGAAATACGTAttaaaatgca
taaaattacAGTTAAAATTGCAACAGTGTGTAACAGAAattagttgaaaa
tattttatcaaatatgaTAATAAACTTTCTTCATTTGTTGAAAATGTTct
tagtaatttttcattttcttgaccTGATCACTGACTTCTCTTAACTCTTT
CATCAACTTTTGAATTCGGTGTCTGATGCGGTTGCTTTTGGCATCATTGT
GTGATTTCTTGGTGTGAAATGAATCCTGTCGCTTCTTTCCTTTCTTACCT
TTCTTGCCAGGCTTTCTGCCTGGTTTTGGTGCTTTGGTAGGTCTTGGTGT
GGGTGCATCAGTGGTTGTTACAGAAACAGGTGACGACAAATTGGTTTGTT
GACTATCAATCATTTTGTAAAACGCACCTGCAAAATCATTCATCCATTGT
GGATTGTTGGCGGAGTATTCACGACAGATATTATAACCAGAATTCTTTTC
ACAACATTCTGGTTCTCATCTTGGTGGATTGTTGGCAACACCACACATTG
AGCATTCTTGGTTATCAAGGAAGGCACCCGATTCTTGGTTCAAGTGCATA
TTGAAAGCAATGGCCCCATCAGTACTCAAAAGAGCTTTAGCTCCTGGATT
TCCGCCTTCTCTATTTCCAGATCCTCCAGTAGGTCCCCTTCTTTCCCATT
GATGTTTTTGACCATTACTCTCTGGCATCACTTTCAAGAACCATCTTCTT
TCGGCAACTTCTTGATAATAGGCACTATCCAAGCGCTCGATATTATTCAC
CCATGGACCTTCGTAACCAGAGTTCCTTGTCTCCATTCGACCAAGACTGT
GAGCTCCCATTAAAGCGACGCTTTCTTGTTCATTAAGACCGAAAGCGGCA
TTAAAGAACTTGGTGACTTCACCAAGATTCTGCATATTGTTACCGGGGAA
ATGCTCATTTGGATCATTTTCCTGTCCATCTGAACTGCAGTCAGCTCTGC
CAACCTTGAAACGGCTCATATCGAATTGTGCATCTTCTCTTGAAGCTTCA
TTAGCTGCAACGACTCCGGCAAAAGCAAACAAGTCAGCTCTAGTGATTTC
ATCTTTGTGATCATTGTATACTCCGTTTAGAACATCAATATACCGTTGCA
AGCCGTTGTTATCAGGATTGCCAGAATCGATACATCCATCACATCGACCT
TCGCCAACACAATCGTGAAATGATAACCGCACAAACCCAGCTGCTAAACG
TAAATTACCCCTCTCTTCTGCAATTTTGTTCCTGAGTTCTCCATCAATCT
TCTCTAAGGTTTCCTTTGATGCCCTGATGGGAACATTATTTTGACTGGAG
ATTTGATAAACTGCAATAACGGCCAACAAAACGACAGTTTTGAGGTACAC
CATGATCTacaatcgaaaaataaaaa Coding sequence (CDS) from alignment at sc0000225:315684..317159 >TCONS_00016078 ID=TCONS_00016078|Name=TCONS_00016078|organism=Clytia hemisphaerica|type=CDS|length=888bp|location=Sequence derived from alignment at sc0000225:315684..317159 (Clytia hemisphaerica)
TCATCTTGGTGGATTGTTGGCAACACCACACATTGAGCATTCTTGGTTAT
CAAGGAAGGCACCCGATTCTTGGTTCAAGTGCATATTGAAAGCAATGGCC
CCATCAGTACTCAAAAGAGCTTTAGCTCCTGGATTTCCGCCTTCTCTATT
TCCAGATCCTCCAGTAGGTCCCCTTCTTTCCCATTGATGTTTTTGACCAT
TACTCTCTGGCATCACTTTCAAGAACCATCTTCTTTCGGCAACTTCTTGA
TAATAGGCACTATCCAAGCGCTCGATATTATTCACCCATGGACCTTCGTA
ACCAGAGTTCCTTGTCTCCATTCGACCAAGACTGTGAGCTCCCATTAAAG
CGACGCTTTCTTGTTCATTAAGACCGAAAGCGGCATTAAAGAACTTGGTG
ACTTCACCAAGATTCTGCATATTGTTACCGGGGAAATGCTCATTTGGATC
ATTTTCCTGTCCATCTGAACTGCAGTCAGCTCTGCCAACCTTGAAACGGC
TCATATCGAATTGTGCATCTTCTCTTGAAGCTTCATTAGCTGCAACGACT
CCGGCAAAAGCAAACAAGTCAGCTCTAGTGATTTCATCTTTGTGATCATT
GTATACTCCGTTTAGAACATCAATATACCGTTGCAAGCCGTTGTTATCAG
GATTGCCAGAATCGATACATCCATCACATCGACCTTCGCCAACACAATCG
TGAAATGATAACCGCACAAACCCAGCTGCTAAACGTAAATTACCCCTCTC
TTCTGCAATTTTGTTCCTGAGTTCTCCATCAATCTTCTCTAAGGTTTCCT
TTGATGCCCTGATGGGAACATTATTTTGACTGGAGATTTGATAAACTGCA
ATAACGGCCAACAAAACGACAGTTTTGAGGTACACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016078-exon-sc0000225-1491911889:315684..317159 | TCONS_00016078-exon-sc0000225-1491911889:315684..317159 | Clytia hemisphaerica | exon |
| TCONS_00016078-exon-sc0000225-1510915933:315684..317159 | TCONS_00016078-exon-sc0000225-1510915933:315684..317159 | Clytia hemisphaerica | exon |
| TCONS_00016078-exon-sc0000225-1575043694:315684..317159 | TCONS_00016078-exon-sc0000225-1575043694:315684..317159 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000225 | supercontig | sc0000225:315684..317159 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0020037 | heme binding |
| GO:0004601 | peroxidase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
| GO:0006979 | response to oxidative stress |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| biological_process |
GO:0006979 |
response to oxidative stress |
| molecular_function |
GO:0020037 |
heme binding |
| molecular_function |
GO:0004601 |
peroxidase activity |
Blast
The following BLAST results are available for this feature:
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