TCONS_00016049 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00016049
Unique Name	TCONS_00016049
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	726

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000225:412959..414805+
coding sequence from alignment at sc0000225:412959..414805+

transcript sequence

>TCONS_00016049 ID=TCONS_00016049|Name=TCONS_00016049|organism=Clytia hemisphaerica|type=transcript|length=726bp
TTTAGATAAATTGAAGATAAGAATaaataagaataaaaaataatcatgga
ttcaaagaaaatgaaagaaaaaggataTGTTTCACGGAAGAAATGCCCTC
ATTGCAAAGTGGAGGTCAATGCAGCGGCCAAGCAATGCAAAGATTGcaac
aaaaaaatcgaaaaaaagaagatcaaaccaaaacaaaatgtATCAAATAA
TCCTTCGAGGACAAAATCTCAAATAAAGAGAAGAATTGATGATCTCCACA
GATTGGATAAGCAGGATGTGTTGGTCATCTACCATTGGGAGACTCCGAAA
CGAAGGTACCTTAGATTTGAAAGCAGTGACGGAGATATGGCAAAAGTTGT
TGCCAAAAATGGAACACTCTCGCATTTACGGCGAGTTTTTCTACATCTAA
TTGATGaGGCTAGGAAAGAAAGAACACCTGGAGAAAAAGAACAACAAGAA
GACAAAAAAGGAGAAGATCAAGAAGAAGACGACGAAGAAAGAGTGGACGA
CGAAGAAGAAGATGACGAAGAAGAAGaggacgaagaagaagaaaaagaag
aggaCGTACCAATGGTGGACGTCGAAATCACCTATCgtaatgatgatgat
gacgacGACGATTTCGGGAGGGCTGCTTTCCCTATTGAATCATTTTAAAG
CGATTCAAAGGTTTCATCTTTTATAGACGATTGTTACTTTAATAGGATTA
ATTTCGCGGGCCaaagaaatcttgaa

Run BLAST on NCBI

protein sequence of TCONS_00016049-protein

>TCONS_00016049-protein ID=TCONS_00016049-protein|Name=TCONS_00016049-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
MDSKKMKEKGYVSRKKCPHCKVEVNAAAKQCKDCNKKIEKKKIKPKQNVS
NNPSRTKSQIKRRIDDLHRLDKQDVLVIYHWETPKRRYLRFESSDGDMAK
VVAKNGTLSHLRRVFLHLIDEARKERTPGEKEQQEDKKGEDQEEDDEERV
DDEEEDDEEEEDEEEEKEEDVPMVDVEITYRNDDDDDDDFGRAAFPIESF

Run BLAST on NCBI

transcript from alignment at sc0000225:412959..414805+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00016049 ID=TCONS_00016049|Name=TCONS_00016049|organism=Clytia hemisphaerica|type=transcript|length=1847bp|location=Sequence derived from alignment at sc0000225:412959..414805+ (Clytia hemisphaerica)
TTTAGATAAATTGAAGATAAGAATaaataagaataaaaaataatcatgga
ttcaaagaaaatgaaagaaaaaggataTGTTTCACGGAAGGTAATATTAC
TATAATTCCTATTAATtaatgtttttgagaaaattgccaGTTGTAGGGGG
TGAAAAGGGGAGggaaaattataaagaaaatatgcaattaaaatcttaag
agtACACAGAAGTGAAAGTTTTACAAAGATAAAACTATTGAATTTTATCA
GTATCTTCTAAAACTAACGAGTGAccataaaaaaaagtaaacctCGATAA
TAAAGAACAAGAACAATTTTCTctttgttactcgttgttaatcgttaatt
gtacctcaaaaattttgattactACAGTACTTACAGAtaatatttgttct
tttttatcgTTGCAACATTCATTTTGATATTAAGGAACCTTTGGACTGta
ttttttaaactaaattAATTTCAACTCTAAATTATGATTTAGAAATGCCC
TCATTGCAAAGTGGAGGTCAATGCAGCGGCCAAGCAATGCAAAGATTGca
acaaaaaaatcgaaaaaaagaagatcaaaccaaaacaaaatgtATCAAAT
AATCCTTCGAGGACAAAATCTCAAATAAAGAGAAGAGTAAGAACGATTTA
TACTAAATCTCTACGTATTGAAATGTCTTCAATACCATGCAATACGAGCA
GCTGTGAATATAACAATTTAGCCCTTGTATTTCTAGCGATATATATGCCT
CGCTTTATAGGATTAACTGCATGCCTGGCTGGATAATATTTCATCAGCCC
TATTTTAAAGGTTTAATCAAGTGTTATGTTTTATTAATAAAAGTATTACT
CTGTTTTTAGATTGATGATCTCCACAGATTGGATAAGCAGGATGTGTTGG
TCATCTACCATTGGGAGACTCCGAAACGAAGGTGAGCTTTTAGTAATTGC
ACTTTGACTGCAAAATTTAAAGACTTTTGAATACTTCAATCCGAACGCTA
CAATAACTTGTCAACTTATATTTCTTtctggtgcacccggtatatatatt
tttataggaaaaaaaaacggagagaaaaaatttcttgtgaaaatgggaaa
aaaaacattcatccaaaatcacccaaaacctttaataaaacTGTCTGAAA
TTTTATATCATATCTTCGTTCAGGTACCTTAGATTTGAAAGCAGTGACGG
AGATATGGCAAAAGTTGTTGCCAAAAATGGAACACTCTCGCATTTACGGC
GAGTTTTTCTACATCTAATTGATGGTGAGTTTTACAATTCATGTTTTATA
AGGCTGCCGTCCTTTTGCTATATCTTTTTGATGATATCGTGCAatacatt
tgaaatattttgaatattttaatagGGTACTGAAGCTTTAGATGTGTATc
aaatactgtgaaaatttttagtgtGATAGCgattgatttattgaaattca
attgttgCTTTCCTAAAATCGATGCGgaaattttatgcatttttatgCGT
TAcgcatttttatattttttacttcagaGGCTAGGAAAGAAAGAACACCT
GGAGAAAAAGAACAACAAGAAGACAAAAAAGGAGAAGATCAAGAAGAAGA
CGACGAAGAAAGAGTGGACGACGAAGAAGAAGATGACGAAGAAGAAGagg
acgaagaagaagaaaaagaagaggaCGTACCAATGGTGGACGTCGAAATC
ACCTATCgtaatgatgatgatgacgacGACGATTTCGGGAGGGCTGCTTT
CCCTATTGAATCATTTTAAAGCGATTCAAAGGTTTCATCTTTTATAGACG
ATTGTTACTTTAATAGGATTAATTTCGCGGGCCaaagaaatcttgaa

Coding sequence (CDS) from alignment at sc0000225:412959..414805+

>TCONS_00016049 ID=TCONS_00016049|Name=TCONS_00016049|organism=Clytia hemisphaerica|type=CDS|length=3015bp|location=Sequence derived from alignment at sc0000225:412959..414805+ (Clytia hemisphaerica)
atggattcaaagaaaatgaaagaaaaaggataTGTTTCACGGAAGAAATG
CCCTCATTGCAAAGTGGAGGTCAATGCAGCGGCCAAGCAATGCAAAGATT
GcaacaaaaaaatcgaaaaaaagaagatcaaaccaaaacaaaatgtATCA
AATAATCCTTCGAGGACAAAATCTCAAATAAAGAGAAGAATTGATGATCT
CCACAGATTGGATAAGCAGGATGTGTTGGTCATCTACCATTGGGAGACTC
CGAAACGAAGGTACCTTAGATTTGAAAGCAGTGACGGAGATATGGCAAAA
GTTGTTGCCAAAAATGGAACACTCTCGCATTTACGGCGAGTTTTTCTACA
TCTAATTGATGaGGCTAGGAAAGAAAGAACACCTGGAGAAAAAGAACAAC
AAGAAGACAAAAAAGGAGAAGATCAAGAAGAAGACGACGAAGAAAGAGTG
GACGACGAAGAAGAAGATGACGAAGAAGAAGaggacgaagaagaagaaaa
agaagaggaCGTACCAATGGTGGACGTCGAAATCACCTATCgtaatgatg
atgatgacgacGACGATTTCGGGAGGGCTGCTTTCCCTATTGAATCATTT
TAAatggattcaaagaaaatgaaagaaaaaggataTGTTTCACGGAAGAA
ATGCCCTCATTGCAAAGTGGAGGTCAATGCAGCGGCCAAGCAATGCAAAG
ATTGcaacaaaaaaatcgaaaaaaagaagatcaaaccaaaacaaaatgtA
TCAAATAATCCTTCGAGGACAAAATCTCAAATAAAGAGAAGAATTGATGA
TCTCCACAGATTGGATAAGCAGGATGTGTTGGTCATCTACCATTGGGAGA
CTCCGAAACGAAGGTACCTTAGATTTGAAAGCAGTGACGGAGATATGGCA
AAAGTTGTTGCCAAAAATGGAACACTCTCGCATTTACGGCGAGTTTTTCT
ACATCTAATTGATGaGGCTAGGAAAGAAAGAACACCTGGAGAAAAAGAAC
AACAAGAAGACAAAAAAGGAGAAGATCAAGAAGAAGACGACGAAGAAAGA
GTGGACGACGAAGAAGAAGATGACGAAGAAGAAGaggacgaagaagaaga
aaaagaagaggaCGTACCAATGGTGGACGTCGAAATCACCTATCgtaatg
atgatgatgacgacGACGATTTCGGGAGGGCTGCTTTCCCTATTGAATCA
TTTTAAatggattcaaagaaaatgaaagaaaaaggataTGTTTCACGGAA
GAAATGCCCTCATTGCAAAGTGGAGGTCAATGCAGCGGCCAAGCAATGCA
AAGATTGcaacaaaaaaatcgaaaaaaagaagatcaaaccaaaacaaaat
gtATCAAATAATCCTTCGAGGACAAAATCTCAAATAAAGAGAAGAATTGA
TGATCTCCACAGATTGGATAAGCAGGATGTGTTGGTCATCTACCATTGGG
AGACTCCGAAACGAAGGTACCTTAGATTTGAAAGCAGTGACGGAGATATG
GCAAAAGTTGTTGCCAAAAATGGAACACTCTCGCATTTACGGCGAGTTTT
TCTACATCTAATTGATGaGGCTAGGAAAGAAAGAACACCTGGAGAAAAAG
AACAACAAGAAGACAAAAAAGGAGAAGATCAAGAAGAAGACGACGAAGAA
AGAGTGGACGACGAAGAAGAAGATGACGAAGAAGAAGaggacgaagaaga
agaaaaagaagaggaCGTACCAATGGTGGACGTCGAAATCACCTATCgta
atgatgatgatgacgacGACGATTTCGGGAGGGCTGCTTTCCCTATTGAA
TCATTTTAAatggattcaaagaaaatgaaagaaaaaggataTGTTTCACG
GAAGAAATGCCCTCATTGCAAAGTGGAGGTCAATGCAGCGGCCAAGCAAT
GCAAAGATTGcaacaaaaaaatcgaaaaaaagaagatcaaaccaaaacaa
aatgtATCAAATAATCCTTCGAGGACAAAATCTCAAATAAAGAGAAGAAT
TGATGATCTCCACAGATTGGATAAGCAGGATGTGTTGGTCATCTACCATT
GGGAGACTCCGAAACGAAGGTACCTTAGATTTGAAAGCAGTGACGGAGAT
ATGGCAAAAGTTGTTGCCAAAAATGGAACACTCTCGCATTTACGGCGAGT
TTTTCTACATCTAATTGATGaGGCTAGGAAAGAAAGAACACCTGGAGAAA
AAGAACAACAAGAAGACAAAAAAGGAGAAGATCAAGAAGAAGACGACGAA
GAAAGAGTGGACGACGAAGAAGAAGATGACGAAGAAGAAGaggacgaaga
agaagaaaaagaagaggaCGTACCAATGGTGGACGTCGAAATCACCTATC
gtaatgatgatgatgacgacGACGATTTCGGGAGGGCTGCTTTCCCTATT
GAATCATTTTAAatggattcaaagaaaatgaaagaaaaaggataTGTTTC
ACGGAAGAAATGCCCTCATTGCAAAGTGGAGGTCAATGCAGCGGCCAAGC
AATGCAAAGATTGcaacaaaaaaatcgaaaaaaagaagatcaaaccaaaa
caaaatgtATCAAATAATCCTTCGAGGACAAAATCTCAAATAAAGAGAAG
AATTGATGATCTCCACAGATTGGATAAGCAGGATGTGTTGGTCATCTACC
ATTGGGAGACTCCGAAACGAAGGTACCTTAGATTTGAAAGCAGTGACGGA
GATATGGCAAAAGTTGTTGCCAAAAATGGAACACTCTCGCATTTACGGCG
AGTTTTTCTACATCTAATTGATGaGGCTAGGAAAGAAAGAACACCTGGAG
AAAAAGAACAACAAGAAGACAAAAAAGGAGAAGATCAAGAAGAAGACGAC
GAAGAAAGAGTGGACGACGAAGAAGAAGATGACGAAGAAGAAGaggacga
agaagaagaaaaagaagaggaCGTACCAATGGTGGACGTCGAAATCACCT
ATCgtaatgatgatgatgacgacGACGATTTCGGGAGGGCTGCTTTCCCT
ATTGAATCATTTTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_008969	XLOC_008969	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00016049-protein	TCONS_00016049-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000225	supercontig	sc0000225:412959..414805 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.7181	2.2436	0.700718	1.12157	34.9051	25.1293	17.8578	21.2361	13.4709	17.1727	17.7729	15.377	13.1179	13.835	25.3106	29.19	19.7317	21.3801	16.3921	21.7491	18.4552	13.126	7.34975	10.5163	23.8863	26.5074	19.834	11.6107	11.4146	12.7161

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00016049 vs. Swiss-Prot (Human)

BLAST of TCONS_00016049 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

You are here

TCONS_00016049 (transcript) - C. hemisphaerica