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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016034 ID=TCONS_00016034|Name=TCONS_00016034|organism=Clytia hemisphaerica|type=transcript|length=839bpRun BLAST on NCBI protein sequence of TCONS_00016034-protein >TCONS_00016034-protein ID=TCONS_00016034-protein|Name=TCONS_00016034-protein|organism=Clytia hemisphaerica|type=polypeptide|length=279bp GVTELFTGLGFMAGPALGGVLYQHGGFKMPFLVCGGLVIVVLFCVFWILPRun BLAST on NCBI transcript from alignment at sc0000225:25284..40572+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016034 ID=TCONS_00016034|Name=TCONS_00016034|organism=Clytia hemisphaerica|type=transcript|length=15289bp|location=Sequence derived from alignment at sc0000225:25284..40572+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000225:25284..40572+ >TCONS_00016034 ID=TCONS_00016034|Name=TCONS_00016034|organism=Clytia hemisphaerica|type=CDS|length=10044bp|location=Sequence derived from alignment at sc0000225:25284..40572+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00016034 vs. Swiss-Prot (Human)
Match: S18B1 (MFS-type transporter SLC18B1 OS=Homo sapiens GN=SLC18B1 PE=1 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 3.495e-26 Identity = 91/281 (32.38%), Postives = 153/281 (54.45%), Query Frame = 1
Query: 1 GVTELFTGLGFMAGPALGGVLYQHGGFKMPFLVCGGLVIVVLFCVFWILPSEESYHNDNTDGKDEELTPISQALRIPGIAAIAVCIVTGGMALSFFDPTLAPY-LKKIDPDIQAQQIGLVFMSIAGVYMFVAPIIGYIADKSIPGRVCIIIGQFGLCIG---FCFIGPSPFLEKFIPAKVWLVAVSGGFIGLAIAPFVVPTLPDMQKTGRRGGLPATLGTDSLISGLFNGFFSIGSVLGPTIGGALSQQYSXXXXXXXXXXXXXXXXIFLGIFTLWERNTK 831
G E F+GLG + GP +GG LYQ G+++PF+V G +V++++ +ILP+ ES +++ K + +P + IA I + F DPTL+ + L+K + + A +GLVF+ +A Y +P+ G ++DK P R +++ FG I + +GP P L I +++WL+ + GL+ ++PT P++ G L T L+SGLF+ +SIG+ +GPT+GG L ++ FE AA + G G+ +G+F L E + +
Sbjct: 168 GSLETFSGLGLILGPPVGGFLYQSFGYEVPFIVLGCVVLLMVPLNMYILPNYESDPGEHSFWK---------LIALPKVGLIAFVINSLSSCFGFLDPTLSLFVLEKFN--LPAGYVGLVFLGMALSYAISSPLFGLLSDKRPPLRKWLLV--FGNLITAGCYMLLGPVPILH--IKSQLWLLVLILVVSGLSAGMSIIPTFPEILSCAHENGFEEGLSTLGLVSGLFSAMWSIGAFMGPTLGGFLYEKIGFEWAAAIQGLWALISGLAMGLFYLLEYSRR 433 The following BLAST results are available for this feature:
BLAST of TCONS_00016034 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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