TCONS_00016032 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016032
Unique NameTCONS_00016032
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length747

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016032 ID=TCONS_00016032|Name=TCONS_00016032|organism=Clytia hemisphaerica|type=transcript|length=747bp
CGATGTGAGTTGCTCCCAATCAAGTTTTATGCACATATGGCTTTTGTCTT
GGAATGGTCAGATAGAAATACTGCTCAGGAAAAAAAGAAAGTGAATAAAA
AGGATGCCAAAAATAAGACGATCAAACAGTGATGAAACCCACAATAAAAC
ACCTACGCCAACCCCTTCGTTTTCACGGTCACTTTCACATGATGTGAGCC
AGGTTGATGGAAATCTGTTGGTAGAGCGTAAAAACTCATTTCATGTGAGA
CCAACTTCATTTTGTCGACAAAGTTCATTGATTGATAAAAATGCAATTCA
GAATAGAGAGTCTGACAAGGATCAACCTAAACTGATACAAAATACCAAAC
AGCTTGTTATTTTGATTGGGATGGCATTGATTGAGTTTTCTGGAACATGT
GGCATGTCAGTCATAGCACCCTTCTTTGCAAATGAGGCTGCTTCGAAACA
TGCCAGTCAGACCATGGTGGGTCTTATTTTTGCAGTTTATCCATTGTTTG
TATTCTTATTGTCTCCTATTGTTGGTAAATGGatgccaaggCTTGGAGTG
AAGTTTTGCCTAATTGCTGGCTGTTTCCTTGAAGGAGGAACTGAAATACT
TTTTGGGTTTGTAGAGGATTTACCTAGTGGACCAGTTTTTGTAGTGTTTT
GTTTCGTCATTCGTATTGTGATGGCCATTGGATCAGCACTGAGTGCCACC
GCTTCCCTGTCAATCCTCACTGTCACTTTCAAAGATCACATTGGCAC
Run BLAST on NCBI

protein sequence of TCONS_00016032-protein

>TCONS_00016032-protein ID=TCONS_00016032-protein|Name=TCONS_00016032-protein|organism=Clytia hemisphaerica|type=polypeptide|length=214bp
MPKIRRSNSDETHNKTPTPTPSFSRSLSHDVSQVDGNLLVERKNSFHVRP
TSFCRQSSLIDKNAIQNRESDKDQPKLIQNTKQLVILIGMALIEFSGTCG
MSVIAPFFANEAASKHASQTMVGLIFAVYPLFVFLLSPIVGKWMPRLGVK
FCLIAGCFLEGGTEILFGFVEDLPSGPVFVVFCFVIRIVMAIGSALSATA
SLSILTVTFKDHIG
Run BLAST on NCBI

transcript from alignment at sc0000225:13254..24950+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016032 ID=TCONS_00016032|Name=TCONS_00016032|organism=Clytia hemisphaerica|type=transcript|length=11697bp|location=Sequence derived from alignment at sc0000225:13254..24950+ (Clytia hemisphaerica)
CGATGTGAGTTGCTCCCAATCAAGTTTTATGCACATATGGCTTTTGTCTT
GGAATGGTCAGATAGAAATACTGCTCAGGAAAAAAAGAAAGGTTTGTGCC
TGCCATGGGTtggaccatttttaaaccaGGCAGGGTTATCAACAAACTTT
TCCCCAAAGGCAAAGCCTGgatttttttaaggtttttagtTCATTTTTCC
TAGCTAGGGGTTTTAagttcatttttcttattttacttCTATCTACCATT
TATTTGtgcataagcttaaaaaaagcaaacattGCAAATAAGGGGGAATG
ATTTCCAAGGAAGGGGGGTCGGTGAAcaatcagtcaggcacatcatcctg
gcaaatgaacggggtgagcatttgcatggggtattcgtcacccagtggaa
atgagataggacgtctcaggctaaaagcgtgaaaatgaataaaaatgaac
ttcaaactgaaaatgggaaaaaaggaagaaaactgggaactttatttttt
tgttaaaagtttcttcaatcttcgaagaaaaaattgacccatggaaaaaa
aatttcatctctacagTACAcagttcttcaaaatgaagcaaaatatttca
aacccggTTCAATagcccttttttcaaagaggacatcctgttgaataatt
atgtagtccagccataaaaacaatgatagagccatgcataattactgtat
catgcatattgaaataattatgcatggttttatcattgtttttctgctgg
actacataatagaccttttttcaaagaggccaccctgttgaataattatg
tagtccagcagaaaaaacaatgataaaaccatgcataattattacaatat
gcatgatacagtaattatgcatggctctatcattgtttttatggctggag
tacataattattcaacaggacgtcctttttaaaaaaaggtctattattca
acagggtggcctctttgaaaaaaggtctattgtgtgGGGTATGCAGcact
attacatcacttttgttttcgaccccttgcattgggctattccaaaaaag
atttatacaggtgtattgacgaactttttcaCCAACCCCCCtgtcagtga
ggctggaacatcgatttttgaggattacgattttaccagctttttagcga
tttttgcctcgctaacccaaatctcgcaaNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNtgtaatttattgatgttgatg
gcttgttgattctttaaagaaaaaagataacaggtatagctttttctaat
cctggaatatcgaggttccagctacactgcctgtggaaattttgaataac
aagttatcccctggaaattagggGGTAGACCCCTCTGGAAAGTGAAATCT
TGTGAAAAAGGTGCTGGAAAAAAACTATCGATGTCAGTTGCCCCATTAAA
AAAGAATGGGAGTATCATCATTGATGACCAAAAGAAAGCTGATATCCTTA
ATGAGCAGTATTGCAGCGTTTTCTCTAAGCCCAACAAAGATATACCACCC
ATCAGATCGCCAATTGTTGAAAATACATTGCCCGAtattgaaatcaaaga
aaacgGTGTCCGCTCTCTGTTGTCAAAGCTTAATCCTCAGAAAGCAACAG
GGCCTGATAATATTTCAGCAAGGTTTCTGAAGGAATTTGCTAGCGAAACA
TCACCTGCCCTAACATCGATATTTAACGCATCACTTAGCAAAGGAACACT
TCCGACAGATTGGTTACACGCGTTTATTGTTCCTGTTTATAAAGGTGGAA
ACAAGGACAAAAATCAGGCTGAAAACTACCGGCCTGTGTCTCTCACATCG
ATTTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTTCATATATCTTTGCACTCTACTCACTTAATCATCTTTGAAGCAAT
TTtgttttgacgtcacttgcctacttaccaaaaatatttttactttagct
atGTCTCTCTTTATTTCTAGTGAGTTTATTAATCTTTTTAGCACAATACt
ggtttattttaaaatttaatttaattaaatttttaacttttaatttaact
tttgatttaactttacaCCATTTTNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTAGTTTGCCTAGAA
CGTCAATATTATTAATTACTACTCATGACTTAAGCCTGAGGCTCAAACTT
CTCATTACTACTTTGCCTCCACGTATCTTGGCATTTTCAGAACATTTTGT
TTAGCCTTATGCTCGTTACTCTTAATCTTGATAACCTAAGTTTTGTCCTC
AACCAAATATTTATTATTGAATAAacatacaaacattttttattattaaa
ccaatttcatttatcttatttttgttaattcttttaTATGTAGGGAGAAC
AAACATTTATGTTGTTGACTActgaaatatatagatagatagatagatag
atagatagttTATAAAgagagaaccccctggaaaccttcaataaccccct
tggaaaatctgaaaaaggaacaaaaacccTTGGAAAACCAAGGCTcagaa
ccccctggaaaagttcgtcaatacccctgtatgatttaaaaatggaatag
cccctTTGCCACCAatcacaagtgaaaaataccccgttcatttgccagga
tgtgcccgACTGACAGTCAGGGCCTTCTTCAGTCTTCTTGCAGTGTAGCT
CTaactaaagctctaaaacagcatctaataacatgaaaaccagaatatga
ttcttcaatgggaatcaaaactataaagtgcacttacaaacatcaatata
taTCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgtcaagagtcttgtaaaca
ttccaacaacttccatcgaaatgatctgtcacagctgagtctaccatttt
taacacggtccgaggattgagctgaGAACGCTCGCAGACCGCCCGCAGAA
CGGGTGAAAGATTTAATCTGTctatcattttctcaagcgaagagtacccg
aagcgattctagctttacaatGGCGCCTCGGATCaccagtggatagtatt
caattatcattatccttttattttcatttctagaacttttgcaaaaaaaa
ggaaaaatagaaaagttgtatattttactgctctattcacatactgacag
ttacatcaatatgccaaaaacattttgttcaaccaccttcacttcaagat
aggccaccattgaatgaacttccttttataggatgaaccatattcatgtg
gctttcagccttgcactccatcacaagcctatttgagatattttactaac
tagcccagagaaaaattttaaacctttaNttactaactagcccagagaaa
aattttaaacctttattatttgaatgcatgcctttttaatactcaaatat
aaaaaaattaaaaaattttaacttggtcatttagtcaaaaaagtcattaa
aattgattagcctctgtgatggagtgcaaggctgaaagccacatgaattt
ggttcatcctataaaaggaagttcattctatggtggcctatcttgaagtg
aaggtggttgaacaaaatgtttttggcattttgatgtaactgactgaata
gaccttttttcaaagaggacgtcctgttcataaaaacaatgatagagcca
tacataattactgtatcatgtatattgtaataattatccatggttttatc
attgtttttctgctggactacataattatttagcctagaaatctaagcta
gtttgattcagtcacttggataaatctgatggttaagttgtgactgaata
actagcttagggacagtaaactcggtagcttatcaactgacaacaacgac
aattcaaattttgcggcgagggataacgtaaactcacataatttgcataa
ttattcgTCCTTGACCACGCCACACAcagaacataatatcaaaacattat
ttagaatttttttattttctctttttttctatcttctgattggctctttc
ttattgtaagattagataaacaaactctccgtcttacagtttatgcgctc
cttttgtaaaatataaaatgaaattctattgtaaagtgtgccgatggagN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtga
tttttacaaagctcatcttaaaaataaccttcaacaaaatactgtaaata
aaaattactttagactagcaggctaaaataccgtatacaaaacaatgttg
taatcaatccccccaaaaaaaacattttcttgagtcttgaattcGTAGAG
Ctatcactgaaaataagcaccgacagttttatgttcttcgaaaacgaaag
atgtcattgtctgtaaaatcgaacataaagtctcaaattcataaaacaaa
aagataaaccacaaccagtcaaaaacctagaactgtctatcatctatcca
ttacagtatgatacaatatcatgtcatgcaatccaatcagaatacagaac
tgcagcataggatctgtacaagtactctctcttatttattgccacatacg
atagtcaatgttcaatcacaaatctttactttattatttgccattctgga
aacaagcaacttttgctgtctttacgacgaatagcNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTcctcgttt
tctgataaaataattataaacttctatcgctcacgaaaattcccgatttt
ttaccacgtgacccactctgaccaatcagaagctcaccgaatcctgcgtt
catattatgaacccgccctttccctaagccagtattccaaggcaaactta
aaatccgtaattataaaaaatctttaaagtgccgaaaaacgctatattgc
cataagccgtgtgtcctagccttgtgaatacaggcttagttaactaggct
aataattattcaacagggtggcctctttgaaaaaaggtctatttgaaaga
tcttctatgtggcgtttttttgcaaactgaAGTGCTGAcatgcagcatag
ggtacaaagtccaaatatgtgtttcccgttatttttgtatgaagagttag
gtctacactgtcttGGTCTTTTATAGCattaggcaattactttttaattt
tctggtttacagacattatgaggaaaagttttggacaggaggatggaaaa
aaaataaaaataaaattgatgttttaaattttttttattttctttttaaa
aatctgaaatcggAGGAAGCTAAAGtatatattgattttttttgatttaa
agacaaaagaatAAAGTGCAAGATGTTGTTATAGATAGAGTCTTTGgata
aaaaacactacaaatAAACTGAAACATAAAAATGTAGACATAAAGACTGA
TGTGTATATGTAAGACTGACATAGGTTCACACCCATTTAGGGTTCACCca
aggttcccactttagggaTCCCACTTAGGGGGGCATCCCACTTTTCTGAT
ATGCCTATTTTTATATCTACTTATGAATTTTAACAATCAGATAAAGGACC
TCAAATAAAAGCaattataaagaaaagaaaagaatgaagAAAATCCACTG
TGTACACAAAGAGTTATattatttagtttgttttttgtggatAGGGAAAT
TCCATGGGAAAGTTCCCTGACATTAAGGAAAGGATCAAAGTATCTTTACA
TCAGCAGAATAAGGCACAGCTGTGTTAGATCATTTAACCCCCTCTctctt
tcatttcttttcttttgttttcctatttaagtaaaggttttttatttatt
tcttcttttttgaaggtcggaggaaaaaaagtaaataaaagttttttaaa
tctcaatcttattttttttttattttggtagaAATAACGTCGGCGGATcc
gtaaaccaataaataaaaaagtgtttgccttagttcggatagaataaaaa
catacctgatcaacacaaccaaaccttctgtcttgcgtttactctttcct
tcccaacaactttcgtttttggttatgtaggttttaaaattcACAAGTAA
GGAGCCTCTCATAGCTTTATctgtttcattccgtacgttttttatccacg
tggtgaaccggtttccccgatttcccgataattaaaattTGGAACTTTTC
CGTGGGCGTGATTGGGCTTACCACCATCGCGAAATAttattttcgtgaaa
attaccgtattctaacgctaaatataatctagataggaaacaaatattaa
atttgattctctttttgttcgtatttctaaatttcacgataaaaagaact
atttacaaattaatttCTTTAACAGCCATTGattcgacattgacatattt
aatgatgtcataatcaatgccgtgcatattttgtcagcgtttacccaaac
gcttcaatctcgcgcaggcttaggggtcaagactagaacccccaatacaa
GACATTTGCctaaccgaaaaaaaatcatcattgccaattttgttaattgt
cagaatcgtttactcactggaaatacgcaactttatgaagtttcgttttt
tttcgcttgtgcttcattttgaaaatatagaagatgaaaagttaccatca
attcCGCAAGTAAAAGAAGGTATTTCAACTAGTCTATGAAAAGTGCTTTC
Aaaataatatatgcataaaactgacgaaatcctttcttttttattcttag
gtgacgtcaccatcgatcctgacttgacaatggagaagaTGAACGAAGCG
CTAGAAAAACGCCCCttaaaattgaaactaggaatttattgaatatttca
ctaatgaagtatcaaactttttgttttttgtaattattataaattcatag
tttttaaatactatttttaaggacaattaaagtgaatttaagatgactgg
gtggatattgggcagACAGGGggttttgcacgttccgagatcggaaatta
gacgagagtaaaagacgggggcctTTTAGTTTgtaatattaaattttttt
ttcgcgaatgcaaaatgaattttttatttttgaattaaggaaacaTAAGG
GGCCATTAAAAAAGTACGTTCGTTTTTTGCtgacccctcccccccccccc
ccccccttttaaatTGTTGTGGTTAAGTGAACGCTtaagacgaatgtttg
ggaaatcaaaaagacaacttttgtaaggatgttgagttttgtttatatgg
taCTTTGTGATGGActgttcaaaacaaatgaactacgcagctccgctcac
agctctactctaccattttgttttgatttagttttttattttaatgacca
gacaggtcattcatttgagggctatgcaagtttccctccactgacgaaag
ttacccaacttcacggtagATGTTTTGGTTCggtaatttatttttaattt
accgttcatgttcagtcatttgtttggttaTTTTCTGTCTGTCACTAATG
TGatctaccgtcaactgctaAATCGGTGTCCactcattttgaatgaaaac
aaaaaagttcagtttcactatcagtgaaagttattgtgacatgcatgtta
tgacagaaagtatgattgataaatttgttgtcaaagagatttaacagtaa
gtgaaaatgcaggccagatatcaacagtcccatgtttcgaccaattgtcc
aaagttagagcagttgacggtatagattatggtaattttcagtttttgag
gcatgccataacttacccaaCAAACCAACACTTTTCTAAACAATCCACCT
GTATTAACTAACAATTTTCAAATGGCTATGTATATTTTTTTCAGTGAATA
AAAAGGATGCCAAAAATAAGACGATCAAACAGTGATGAAACCCACAATAA
AACACCTACGCCAACCCCTTCGTTTTCACGGTCACTTTCACATGATGTGA
GCCAGGTTGATGGAAATCTGTTGGTAGAGCGTAAAAACTCATTTCATGTG
AGACCAACTTCATTTTGTCGACAAAGTTCATTGATTGATAAAAATGCAAT
TCAGAATAGAGAGTCTGACAAGGATCAACCTAAACTGATACAAAATACCA
AACAGCTTGTTATTTTGATTGGGATGGCATTGATTGAGTTTTCTGGAACA
TGTGGCATGTCAGTCATAGCACCCTTCTTTGCAAATGAGGTAAAGTCCAT
ATTATATTATCTGTTCTGTCAAGTAGAAGTTTAAGGGGCCTCCAGCGGTT
TACGTGAATGTGCTTTTCActtaaaaatatatatgcgtgaaaattaaaaa
aacattgtgtgattgcgtgaattgacgGTCCGCTGGGGGGCTTCTTTAAA
ACTTTTACTTTGATTTATTATCTAAACTGATCtaaattatatggaaaaaa
gGATTACCCTGTAACAAAaaagtcacttttaactttAGAAGGTTGTGCAA
AATAGATAAACTAATGCAAAGCATGcagaataaaaaaaagttttacaaat
TTCATTTGGTACATAGTGTATAAAAATGTATTTACATCTTCCAGGCTGCT
TCGAAACATGCCAGTCAGACCATGGTGGGTCTTATTTTTGCAGTTTATCC
ATTGTTTGTATTCTTATTGTCTCCTATTGTTGGTAAATGGGTAGGTATCC
TAAATCTATCACTAGTTTCAAATACTAATGTAGGGATTGAAAACTCTGTG
AAATTGACTTATCATAAAAATAAAGCACTCACAAACAGTTTTATGTGTCT
TTGTGCATGTATAATATGTGTCATAATCGACCAGGCTTGTAATTTGCttg
atctttcttttgttttactaAAGTATGAAAGAGTTTTTCAactcaatttt
tgataaatttctacTATCACCATTTGTATTTACAAGGTTAAAACATCACT
TCACACACAAGCACAAACTGTAGtcattttttacttatttttgtagatgc
caaggCTTGGAGTGAAGTTTTGCCTAATTGCTGGCTGTTTCCTTGAAGGA
GGAACTGAAATACTTTTTGGGTAAGTTCCTCagcaaaaattgcaattttc
cAGTTTCATTCTTTGCAAGTAGCCCTGACTTTTCTAGTAACTAATCTGTG
AGTTCTGTGTCACCAATAAAGATCTGGCACTGAACCATGATTTAATATCT
TTCCAGGTTTGTAGAGGATTTACCTAGTGGACCAGTTTTTGTAGTGTTTT
GTTTCGTCATTCGTATTGTGATGGCCATTGGATCAGCACTGAGTGCCACC
GCTTCCCTGTCAATCCTCACTGTCACTTTCAAAGATCACATTGGCAC

Coding sequence (CDS) from alignment at sc0000225:13254..24950+

>TCONS_00016032 ID=TCONS_00016032|Name=TCONS_00016032|organism=Clytia hemisphaerica|type=CDS|length=2568bp|location=Sequence derived from alignment at sc0000225:13254..24950+ (Clytia hemisphaerica)
ATGCCAAAAATAAGACGATCAAACAGTGATGAAACCCACAATAAAACACC
TACGCCAACCCCTTCGTTTTCACGGTCACTTTCACATGATGTGAGCCAGG
TTGATGGAAATCTGTTGGTAGAGCGTAAAAACTCATTTCATGTGAGACCA
ACTTCATTTTGTCGACAAAGTTCATTGATTGATAAAAATGCAATTCAGAA
TAGAGAGTCTGACAAGGATCAACCTAAACTGATACAAAATACCAAACAGC
TTGTTATTTTGATTGGGATGGCATTGATTGAGTTTTCTGGAACATGTGGC
ATGTCAGTCATAGCACCCTTCTTTGCAAATGAGGCTGCTTCGAAACATGC
CAGTCAGACCATGGTGGGTCTTATTTTTGCAGTTTATCCATTGTTTGTAT
TCTTATTGTCTCCTATTGTTGGTAAATGGatgccaaggCTTGGAGTGAAG
TTTTGCCTAATTGCTGGCTGTTTCCTTGAAGGAGGAACTGAAATACTTTT
TGGGTTTGTAGAGGATTTACCTAGTGGACCAGTTTTTGTAGTGTTTTGTT
TCGTCATTCGTATTGTGATGGCCATTGGATCAGCACTGAGTGCCACCGCT
TCCCTGTCAATCCTCACTGTCACTTTCAAAGATCACATTGGCATGCCAAA
AATAAGACGATCAAACAGTGATGAAACCCACAATAAAACACCTACGCCAA
CCCCTTCGTTTTCACGGTCACTTTCACATGATGTGAGCCAGGTTGATGGA
AATCTGTTGGTAGAGCGTAAAAACTCATTTCATGTGAGACCAACTTCATT
TTGTCGACAAAGTTCATTGATTGATAAAAATGCAATTCAGAATAGAGAGT
CTGACAAGGATCAACCTAAACTGATACAAAATACCAAACAGCTTGTTATT
TTGATTGGGATGGCATTGATTGAGTTTTCTGGAACATGTGGCATGTCAGT
CATAGCACCCTTCTTTGCAAATGAGGCTGCTTCGAAACATGCCAGTCAGA
CCATGGTGGGTCTTATTTTTGCAGTTTATCCATTGTTTGTATTCTTATTG
TCTCCTATTGTTGGTAAATGGatgccaaggCTTGGAGTGAAGTTTTGCCT
AATTGCTGGCTGTTTCCTTGAAGGAGGAACTGAAATACTTTTTGGGTTTG
TAGAGGATTTACCTAGTGGACCAGTTTTTGTAGTGTTTTGTTTCGTCATT
CGTATTGTGATGGCCATTGGATCAGCACTGAGTGCCACCGCTTCCCTGTC
AATCCTCACTGTCACTTTCAAAGATCACATTGGCATGCCAAAAATAAGAC
GATCAAACAGTGATGAAACCCACAATAAAACACCTACGCCAACCCCTTCG
TTTTCACGGTCACTTTCACATGATGTGAGCCAGGTTGATGGAAATCTGTT
GGTAGAGCGTAAAAACTCATTTCATGTGAGACCAACTTCATTTTGTCGAC
AAAGTTCATTGATTGATAAAAATGCAATTCAGAATAGAGAGTCTGACAAG
GATCAACCTAAACTGATACAAAATACCAAACAGCTTGTTATTTTGATTGG
GATGGCATTGATTGAGTTTTCTGGAACATGTGGCATGTCAGTCATAGCAC
CCTTCTTTGCAAATGAGGCTGCTTCGAAACATGCCAGTCAGACCATGGTG
GGTCTTATTTTTGCAGTTTATCCATTGTTTGTATTCTTATTGTCTCCTAT
TGTTGGTAAATGGatgccaaggCTTGGAGTGAAGTTTTGCCTAATTGCTG
GCTGTTTCCTTGAAGGAGGAACTGAAATACTTTTTGGGTTTGTAGAGGAT
TTACCTAGTGGACCAGTTTTTGTAGTGTTTTGTTTCGTCATTCGTATTGT
GATGGCCATTGGATCAGCACTGAGTGCCACCGCTTCCCTGTCAATCCTCA
CTGTCACTTTCAAAGATCACATTGGCATGCCAAAAATAAGACGATCAAAC
AGTGATGAAACCCACAATAAAACACCTACGCCAACCCCTTCGTTTTCACG
GTCACTTTCACATGATGTGAGCCAGGTTGATGGAAATCTGTTGGTAGAGC
GTAAAAACTCATTTCATGTGAGACCAACTTCATTTTGTCGACAAAGTTCA
TTGATTGATAAAAATGCAATTCAGAATAGAGAGTCTGACAAGGATCAACC
TAAACTGATACAAAATACCAAACAGCTTGTTATTTTGATTGGGATGGCAT
TGATTGAGTTTTCTGGAACATGTGGCATGTCAGTCATAGCACCCTTCTTT
GCAAATGAGGCTGCTTCGAAACATGCCAGTCAGACCATGGTGGGTCTTAT
TTTTGCAGTTTATCCATTGTTTGTATTCTTATTGTCTCCTATTGTTGGTA
AATGGatgccaaggCTTGGAGTGAAGTTTTGCCTAATTGCTGGCTGTTTC
CTTGAAGGAGGAACTGAAATACTTTTTGGGTTTGTAGAGGATTTACCTAG
TGGACCAGTTTTTGTAGTGTTTTGTTTCGTCATTCGTATTGTGATGGCCA
TTGGATCAGCACTGAGTGCCACCGCTTCCCTGTCAATCCTCACTGTCACT
TTCAAAGATCACATTGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008959XLOC_008959Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016032-exon-sc0000225-1491911889:13254..13344TCONS_00016032-exon-sc0000225-1491911889:13254..13344Clytia hemisphaericaexon
TCONS_00016032-exon-sc0000225-1510915933:13254..13344TCONS_00016032-exon-sc0000225-1510915933:13254..13344Clytia hemisphaericaexon
TCONS_00016032-exon-sc0000225-1575043694:13254..13344TCONS_00016032-exon-sc0000225-1575043694:13254..13344Clytia hemisphaericaexon
TCONS_00016032-exon-sc0000225-1491911889:23498..23842TCONS_00016032-exon-sc0000225-1491911889:23498..23842Clytia hemisphaericaexon
TCONS_00016032-exon-sc0000225-1510915933:23498..23842TCONS_00016032-exon-sc0000225-1510915933:23498..23842Clytia hemisphaericaexon
TCONS_00016032-exon-sc0000225-1575043694:23498..23842TCONS_00016032-exon-sc0000225-1575043694:23498..23842Clytia hemisphaericaexon
TCONS_00016032-exon-sc0000225-1491911889:24198..24293TCONS_00016032-exon-sc0000225-1491911889:24198..24293Clytia hemisphaericaexon
TCONS_00016032-exon-sc0000225-1510915933:24198..24293TCONS_00016032-exon-sc0000225-1510915933:24198..24293Clytia hemisphaericaexon
TCONS_00016032-exon-sc0000225-1575043694:24198..24293TCONS_00016032-exon-sc0000225-1575043694:24198..24293Clytia hemisphaericaexon
TCONS_00016032-exon-sc0000225-1491911889:24600..24673TCONS_00016032-exon-sc0000225-1491911889:24600..24673Clytia hemisphaericaexon
TCONS_00016032-exon-sc0000225-1510915933:24600..24673TCONS_00016032-exon-sc0000225-1510915933:24600..24673Clytia hemisphaericaexon
TCONS_00016032-exon-sc0000225-1575043694:24600..24673TCONS_00016032-exon-sc0000225-1575043694:24600..24673Clytia hemisphaericaexon
TCONS_00016032-exon-sc0000225-1491911889:24810..24950TCONS_00016032-exon-sc0000225-1491911889:24810..24950Clytia hemisphaericaexon
TCONS_00016032-exon-sc0000225-1510915933:24810..24950TCONS_00016032-exon-sc0000225-1510915933:24810..24950Clytia hemisphaericaexon
TCONS_00016032-exon-sc0000225-1575043694:24810..24950TCONS_00016032-exon-sc0000225-1575043694:24810..24950Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016032-proteinTCONS_00016032-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000225supercontigsc0000225:13254..24950 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.28634	4.17986	15.3063	19.9421	35.8383	27.2658	21.1105	28.1767	24.2839	37.7198	36.6118	27.6685	22.8496	20.769	10.0727	14.0645	9.55422	12.7357	10.1645	9.97618	8.16105	7.74365	6.72927	7.21773	14.3726	11.6266	11.0315	6.85156	5.92859	3.87772
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011701MFS
IPR020846MFS_dom
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
Blast
[Close]
BLAST of TCONS_00016032 vs. Swiss-Prot (Human)
Match: S18B1 (MFS-type transporter SLC18B1 OS=Homo sapiens GN=SLC18B1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.365e-16
Identity = 42/108 (38.89%), Postives = 66/108 (61.11%), Query Frame = 2 
Query:  347 KQLVILIGMALIEFSGTCGMSVIAPFFANEAASKHASQTMVGLIFAVYPLFVFLLSPIVGKWMPRLGVKFCLIAGCFLEGGTEILFGFVEDLPSGPXXXXXXXXIRIV 670
            +Q+ +LI  A +        S++ PFF  EA  K AS T++G+IF  + LF  L S + G ++  +G KF  +AG F+ GG  ILFG ++ +P GPVF+  CF++R++
Sbjct:   32 EQVFVLISAASVNLGSMMCYSILGPFFPKEAEKKGASNTIIGMIFGCFALFELLASLVFGNYLVHIGAKFMFVAGMFVSGGVTILFGVLDRVPDGPVFIAMCFLVRVM 139
The following BLAST results are available for this feature:
BLAST of TCONS_00016032 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S18B12.365e-1638.89MFS-type transporter SLC18B1 OS=Homo sapiens GN=SL... [more]
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