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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016022 ID=TCONS_00016022|Name=TCONS_00016022|organism=Clytia hemisphaerica|type=transcript|length=1668bp
GCGATACTTTATTACCAGTTTTACCAATCAAACCATTaaacaatgtttat
tttttataaataaaagaaaacaataacAGATTTCTTTTCACCGAAGTAAT
GGTTTTTTAAAACGTTAGAGAACCTCCAGTATTCACAATCTTCATGGAAA
CAGTTAAACGTTGTAAACTGAATACACTGGTTTCTTTGTTCAGGGTGCAA
TAAAAACGATCTTGCATTTTTCAGGTCTGCTCTATTTGGGTATTCTACAC
TGAGAGTGTTAGGTCCGTTTATCTCTCCGTCGTGCTTTCTTTTGGTAATA
AGGAACAAAGTAGAAATATAATCATCTGACATTTCCTTCCTGATAAAACA
ATATCTTCTTTTTCCTTGTTTCACAAACTTTTGTACTTCATTTTCCAATA
ATGATGACAAAGCTTCGTACCAATTCTCATATGATGTGAAAAGATCTGAT
TCTGTTTTTATACCAATGAAGTATTTCTTAACACCCCAGAGAATTTTATC
TTCCGTGATAGCGATTGAATGTCTTGTTTGTTTTAAGTTTTCTGGTTGCA
GAATCgataagtgttcctgtttcaaAACTGGACTATCTTTACTTTTCGAT
GATGGCAAAACTTCCGGCTTGAATTCTTTAGGCAGCTCTTTAATTTTGCT
AGCTTCTAACATCTCAATTTTGTGACGAAGAGATTGGATGAtcaactctt
tttctttttccatttccaaaaatttaacTGTATTGGTATGTTCTATATGT
TTCATTTTCGATGTCAATTCGTTTTCCTTGGCAGCCATTTTTGTTTGGTA
CTCATACTCTTTCGCATGAAATGATTTTTCCATTTCATTGATTTTCGTTT
TGCATTCGTTTTCCTTGGCAGTAAGTTCATTGTCTTTTTCTAACAGTGCC
TTGTCTTTTTCTGATAGTCTGttctgaaattcattttgctgcTTCAGCAT
TTCTCTCTCCATTACACGATCAACCACGACTTTCTTGGCTTCCATCTCGT
GTGAGGTTTTCAACTTCATGAATTCAAATTCATGACTTAAAGATTGATTG
TCCTTTTCAAGCTgtaaaatcttcatcttttgtTCGTTGTCCTGTTTGGA
CATTTCTTTCTCCAGCTCCAGGGTTTTGATACGATTTTCGAATGTTAATT
TTTGAATCTGCTTGTCATGGTCTTCCTTAAGTTTTGCGATTTCAACGGCG
CTATTGTCAACTTTGTTGGTGACAATTCTACCTGTAGCACTGTGTGCCAA
GTTGCGTTCATCGCAATGTGCAGAatccattttttttgttttttgtttat
ctaaatAAGAATCATACAATGATTAGAAAAAAGATGAACATTAGTTCTAT
TTGTGTGGAGATCTGGCTTTTAGCTATAGTTATATTAGTGTTAGATCTTG
GGAGGTACAATGTTTAAGAGTTGACAGGTGTGTCTGAGCCGGAATCGACA
cttaaaaatatactttttttaaatatttttcggACCCTTagaggaaaaaa
aaaatgagcTAGAGCAGTATCTTTTATCTTCCGTTTGGTTATTTTAAGTG
CAACCTCAAATAACCCACTACTCATGGACGTTTGCTATGGAAATTGATCG
GAAAAGAATTATGGGATGTAGTCAACGGTACAGAAACTTTGGGTGAGGAT
GCGACTGAGGCTGAAAAC Run BLAST on NCBI protein sequence of TCONS_00016022-protein >TCONS_00016022-protein ID=TCONS_00016022-protein|Name=TCONS_00016022-protein|organism=Clytia hemisphaerica|type=polypeptide|length=408bp
MDSAHCDERNLAHSATGRIVTNKVDNSAVEIAKLKEDHDKQIQKLTFENR
IKTLELEKEMSKQDNEQKMKILQLEKDNQSLSHEFEFMKLKTSHEMEAKK
VVVDRVMEREMLKQQNEFQNRLSEKDKALLEKDNELTAKENECKTKINEM
EKSFHAKEYEYQTKMAAKENELTSKMKHIEHTNTVKFLEMEKEKELIIQS
LRHKIEMLEASKIKELPKEFKPEVLPSSKSKDSPVLKQEHLSILQPENLK
QTRHSIAITEDKILWGVKKYFIGIKTESDLFTSYENWYEALSSLLENEVQ
KFVKQGKRRYCFIRKEMSDDYISTLFLITKRKHDGEINGPNTLSVEYPNR
ADLKNARSFLLHPEQRNQCIQFTTFNCFHEDCEYWRFSNVLKNHYFGEKK
SVIVFFYL Run BLAST on NCBI transcript from alignment at sc0000224:69216..70883 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016022 ID=TCONS_00016022|Name=TCONS_00016022|organism=Clytia hemisphaerica|type=transcript|length=1668bp|location=Sequence derived from alignment at sc0000224:69216..70883 (Clytia hemisphaerica)
GTTTTCAGCCTCAGTCGCATCCTCACCCAAAGTTTCTGTACCGTTGACTA
CATCCCATAATTCTTTTCCGATCAATTTCCATAGCAAACGTCCATGAGTA
GTGGGTTATTTGAGGTTGCACTTAAAATAACCAAACGGAAGATAAAAGAT
ACTGCTCTAgctcattttttttttcctctAAGGGTccgaaaaatatttaa
aaaaagtatatttttaagTGTCGATTCCGGCTCAGACACACCTGTCAACT
CTTAAACATTGTACCTCCCAAGATCTAACACTAATATAACTATAGCTAAA
AGCCAGATCTCCACACAAATAGAACTAATGTTCATCTTTTTTCTAATCAT
TGTATGATTCTTatttagataaacaaaaaacaaaaaaaatggatTCTGCA
CATTGCGATGAACGCAACTTGGCACACAGTGCTACAGGTAGAATTGTCAC
CAACAAAGTTGACAATAGCGCCGTTGAAATCGCAAAACTTAAGGAAGACC
ATGACAAGCAGATTCAAAAATTAACATTCGAAAATCGTATCAAAACCCTG
GAGCTGGAGAAAGAAATGTCCAAACAGGACAACGAacaaaagatgaagat
tttacAGCTTGAAAAGGACAATCAATCTTTAAGTCATGAATTTGAATTCA
TGAAGTTGAAAACCTCACACGAGATGGAAGCCAAGAAAGTCGTGGTTGAT
CGTGTAATGGAGAGAGAAATGCTGAAgcagcaaaatgaatttcagaaCAG
ACTATCAGAAAAAGACAAGGCACTGTTAGAAAAAGACAATGAACTTACTG
CCAAGGAAAACGAATGCAAAACGAAAATCAATGAAATGGAAAAATCATTT
CATGCGAAAGAGTATGAGTACCAAACAAAAATGGCTGCCAAGGAAAACGA
ATTGACATCGAAAATGAAACATATAGAACATACCAATACAgttaaatttt
tggaaatggaaaaagaaaaagagttgaTCATCCAATCTCTTCGTCACAAA
ATTGAGATGTTAGAAGCTAGCAAAATTAAAGAGCTGCCTAAAGAATTCAA
GCCGGAAGTTTTGCCATCATCGAAAAGTAAAGATAGTCCAGTTttgaaac
aggaacacttatcGATTCTGCAACCAGAAAACTTAAAACAAACAAGACAT
TCAATCGCTATCACGGAAGATAAAATTCTCTGGGGTGTTAAGAAATACTT
CATTGGTATAAAAACAGAATCAGATCTTTTCACATCATATGAGAATTGGT
ACGAAGCTTTGTCATCATTATTGGAAAATGAAGTACAAAAGTTTGTGAAA
CAAGGAAAAAGAAGATATTGTTTTATCAGGAAGGAAATGTCAGATGATTA
TATTTCTACTTTGTTCCTTATTACCAAAAGAAAGCACGACGGAGAGATAA
ACGGACCTAACACTCTCAGTGTAGAATACCCAAATAGAGCAGACCTGAAA
AATGCAAGATCGTTTTTATTGCACCCTGAACAAAGAAACCAGTGTATTCA
GTTTACAACGTTTAACTGTTTCCATGAAGATTGTGAATACTGGAGGTTCT
CTAACGTTTTAAAAAACCATTACTTCGGTGAAAAGAAATCTgttattgtt
ttcttttatttataaaaaataaacattgtttAATGGTTTGATTGGTAAAA
CTGGTAATAAAGTATCGC Coding sequence (CDS) from alignment at sc0000224:69216..70883 >TCONS_00016022 ID=TCONS_00016022|Name=TCONS_00016022|organism=Clytia hemisphaerica|type=CDS|length=1227bp|location=Sequence derived from alignment at sc0000224:69216..70883 (Clytia hemisphaerica)
atggatTCTGCACATTGCGATGAACGCAACTTGGCACACAGTGCTACAGG
TAGAATTGTCACCAACAAAGTTGACAATAGCGCCGTTGAAATCGCAAAAC
TTAAGGAAGACCATGACAAGCAGATTCAAAAATTAACATTCGAAAATCGT
ATCAAAACCCTGGAGCTGGAGAAAGAAATGTCCAAACAGGACAACGAaca
aaagatgaagattttacAGCTTGAAAAGGACAATCAATCTTTAAGTCATG
AATTTGAATTCATGAAGTTGAAAACCTCACACGAGATGGAAGCCAAGAAA
GTCGTGGTTGATCGTGTAATGGAGAGAGAAATGCTGAAgcagcaaaatga
atttcagaaCAGACTATCAGAAAAAGACAAGGCACTGTTAGAAAAAGACA
ATGAACTTACTGCCAAGGAAAACGAATGCAAAACGAAAATCAATGAAATG
GAAAAATCATTTCATGCGAAAGAGTATGAGTACCAAACAAAAATGGCTGC
CAAGGAAAACGAATTGACATCGAAAATGAAACATATAGAACATACCAATA
CAgttaaatttttggaaatggaaaaagaaaaagagttgaTCATCCAATCT
CTTCGTCACAAAATTGAGATGTTAGAAGCTAGCAAAATTAAAGAGCTGCC
TAAAGAATTCAAGCCGGAAGTTTTGCCATCATCGAAAAGTAAAGATAGTC
CAGTTttgaaacaggaacacttatcGATTCTGCAACCAGAAAACTTAAAA
CAAACAAGACATTCAATCGCTATCACGGAAGATAAAATTCTCTGGGGTGT
TAAGAAATACTTCATTGGTATAAAAACAGAATCAGATCTTTTCACATCAT
ATGAGAATTGGTACGAAGCTTTGTCATCATTATTGGAAAATGAAGTACAA
AAGTTTGTGAAACAAGGAAAAAGAAGATATTGTTTTATCAGGAAGGAAAT
GTCAGATGATTATATTTCTACTTTGTTCCTTATTACCAAAAGAAAGCACG
ACGGAGAGATAAACGGACCTAACACTCTCAGTGTAGAATACCCAAATAGA
GCAGACCTGAAAAATGCAAGATCGTTTTTATTGCACCCTGAACAAAGAAA
CCAGTGTATTCAGTTTACAACGTTTAACTGTTTCCATGAAGATTGTGAAT
ACTGGAGGTTCTCTAACGTTTTAAAAAACCATTACTTCGGTGAAAAGAAA
TCTgttattgttttcttttatttataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016022-exon-sc0000224-1491911889:69216..70883 | TCONS_00016022-exon-sc0000224-1491911889:69216..70883 | Clytia hemisphaerica | exon |
| TCONS_00016022-exon-sc0000224-1510915933:69216..70883 | TCONS_00016022-exon-sc0000224-1510915933:69216..70883 | Clytia hemisphaerica | exon |
| TCONS_00016022-exon-sc0000224-1575043694:69216..70883 | TCONS_00016022-exon-sc0000224-1575043694:69216..70883 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000224 | supercontig | sc0000224:69216..70883 . |
Blast
The following BLAST results are available for this feature:
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