TCONS_00015981 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015981
Unique NameTCONS_00015981
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1305

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015981 ID=TCONS_00015981|Name=TCONS_00015981|organism=Clytia hemisphaerica|type=transcript|length=1305bp
atttcatattAGGAAACCCTTTTATtcatttctgaaaatattttcagcta
tcaaAAGCTGAATTGCTCTAAATTACCTGATTTTAGCTTAAAATTACCAA
CTTTGGTGATTTTGGAGGTACAATATAGGGCCCCTCTTTTATTCGGATCC
CTCCACTTTTTGGAGTATTcgattttttgttgttgaaactCAAAACAATT
TCTATCATTAGGTAAAAATGCAGACGTTTTTAACGATTTTCACGTTTGTG
GTACCAGAATGATTAATTCTACTCAGCTTTATAAGCGTATTATCAGGGGA
AAAGATTCGACTCCCGGAGAAATTCCATGGATGGTAGCCATTATGATTGA
TGGAGAGTATCGTTGTGGAGGAACTTTGATCAGTAAAAAATGGGTTATCT
CAGCTGCACACTGTAACATCTACAGTGGTGACACTTTAATTCTTGGAGCA
TATGACATTGATGTGACCATTAAAGAAGAATTCAACTCAAGACAAGTTCG
AAAAGCAAAGAAAGTGATAAATAATGAACAACATGACATCCCATTTCTGA
ATTCAAACGATATTGCATTAATTGAACTAGATTTTGAAGTAAAATTTGAT
CGCTATGTTAGACCTGCGTGTGTAGTTGGAAGTAATCAGCGCCCATTTGA
TGGCTCTGAAGTTACGATATCTGGATGGGGATTAAGATTGCAAAGGTCCA
AAAATGTTCTCCAAAAAGTTGAGGTTAATGTTATGGGTGATGCTGAGTGT
ACTTCAAAGTATTCTAGAGAATATCATATTGACAGTTCGATGATATGTGC
AGCTGCTCCTGGAAAAGACGCATGTCAACAAGATAGCGGTGGCCCACTTG
TTGCAGAGTTAAAGGAGCCGAGTGAGACTGGACAGTTTTATTTGGTTGGC
GTTGTCAGTTGGGCTAAAGGATGTGCAGATCCAAGATATCCTGGAGTTTA
TACAAATATAGCTCACTTGAGAATTTGGATAGAAGAAAACTTAGCTAAAA
ATCATGTATTTCCAGCATCAATTAACCAGACATTGGCAtacaaataagGT
AATGCAAGATTTGCTTGAGAAGCGATAGAAGGAGGGTTCAGAAGAAATTT
TAATTCCTTTCACCATTAGAAGACGCCAGANATAGAAGGAGAGTCCAGaa
gaaattttaattctttgaCCATTAGAAGACGCCAGAGAAGGAGTGGCATG
AGAAATTAgaaaaggcaaattttgtacTTATTTTTGCTTTAACTATTATA
GAAAAAATATGATGATTTAAATCGTCCATAAATCTAAAACAATTGTATAA
ACggg
Run BLAST on NCBI

transcript from alignment at sc0000224:224473..229618+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015981 ID=TCONS_00015981|Name=TCONS_00015981|organism=Clytia hemisphaerica|type=transcript|length=5146bp|location=Sequence derived from alignment at sc0000224:224473..229618+ (Clytia hemisphaerica)
atttcatattAGGAAACCCTTTTATtcatttctgaaaatattttcagcta
tcaaAAGCTGAATTGCTCTAAATTACCTGATTTTAGCTTAAAATTACCAA
CTTTGGTGATTTTGGAGGTACAATATAGGGCCCCTCTTTTATTCGGATCC
CTCCACTTTTTGGAGTATTcgattttttgttgttgaaactCAAAACAATT
TCTATCATTAGGTAAAAATGCAGACGTTTTTAACGATTTTCACGTTTGTG
GTACCAGAATGATTAATTCTACTCAGCTTTATAAGCGTATTATCAGGGGA
AAAGATTCGACTCCCGGAGAAATTCCATGGATGGTAGCCATTATGATTGA
TGGAGAGTATCGTTGTGGAGGAACTTTGATCAGTAAAAAATGGGTTATCT
CAGCTGCACACTGTAACATCTACAGTGGTGACACTTTAATTCTTGGAGCA
TATGACATTGATGTGACCATTAAAGAAGGTAATGGACTCCGGGAATGGAC
TACAGTCATTATTAACACGTGTTAAAGCACCCCTGTATCAAAGGCCCTCC
TGGACCCAAGCTCAACTGGGAAAAAAATCTGTTTCCATTGGGAATCTTAA
CCTACACTTTCAGCAACAGTGggaaattgattttaatttcatccccattt
tggaattgaaggGAAGAAGTTGCACTCCAAAAttatccccactggatttt
tcaaCTTAGGAACAATATTATTCTTATCCAATCTCCATTGTGGGGAAAAT
TCGCACCGGGGCTATGAGAGAGGGGTGTGTTCGACAGTTACATAAGTGAT
GATAATATACTTAAGTTTTAACGACTGAAAGAACCCAGTGCTCGTGACGA
GGTCctattttcttttagtttttcttACTACCATACTTTTATCTTAGACA
TCGAATCTGCTGGACTTTGAAACTAAAAGTTTGACCTGGTAAGATGAGAC
GAGGATAAATATTGCTGAGAGAATATGTTAACACTAACATTATTTTTAGG
CAAATTCTCTCCCCATCACTTCCAGCTCATTTTTCCACGTAACATTTTTC
CAAGCCCAGTTGGTTTGTCAGTCTAATGAAATTgatacttttttctcaaa
tcccAGAATTCAACTCAAGACAAGTTCGAAAAGCAAAGAAAGTGATAAAT
AATGAACAACATGACATCCCATTTCTGAATTCAAACGATATTGCATTAAT
TGAACTAGATTTTGAAGTAAAATTTGATCGCTATGTTAGACCTGCGTGTG
TAGTTGGAAGTAATCAGCGCCCATTTGATGGCTCTGAAGTTACGATATCT
GGATGGGGATTAAGATTGCAAAGGTCCAAAAATGTTCTCCAAAAAGTTGA
GGTAAGtatgggtgggtgggtgtttgaaCGGCTTTTTAAgtgttaatttt
tttgtaaaaactcGAAATATCAatagtttttcttttctaatatCAGAATA
CCTGTACaaaatgttatatatttttttgcgaTAGGCTGTCACATAATATT
CAGAAATACCACTGGctgaaattcaaaatatacGGATTTTTAAATGCTTA
AgaagaaaatgttgaatttGAACATCGTTTGCAGACATCACTTGGGCCTA
aatactcaagatttttatttcattcagGTTAATGTTATGGGTGATGCTGA
GTGTACTTCAAAGTATTCTAGAGAATATCATATTGACAGTTCGATGATAT
GTGCAGCTGCTCCTGGAAAAGACGCATGTCAAGTgagtaccgtattactt
cgaataaacgccttcTTCTTTTAAACACCGCCCTCGAATAAAAGCCCCTC
CTAAAGTCCATGCTCCTGGAAAAGACGCTTGTCAAGCGAGtaccgtatta
ctttgaatcttcgaataaacgcccccttcttttaaacaccctcctcgaat
aaacgcccttcctgaaatccaaaaaatttagTAAACGCCCTGGACGTTTA
TTCGAAATAATACGGTATTTACTAAACTTTAAATGGATAAAAATTGTATG
AAGGGCACAGGTATGTGTCACCAATAAGAGTATACCTTTTTAGATCTTTG
AAATCTTGCAAAGGGTCGTACAAGCCATAAAATATAACCTTAGTCTccct
aagggttacaaaaaaggaaaaatttcaaaatttcggaTTTTTGTCCAGGA
TATTTGTTCCTCAATGGCTAAATTTTGGTTTCACcttaaaattttcgatt
tttaaaaacattcacTTACCCATAATCCGGCAAAACTATGCCCCCGGAAA
GGAAattgaaaagtcaaaatttaatcaatgtataaagttttgaatttatc
GACACTTTGATGGAATTGGATAAGAATCATATCAGAcgccagctggcaca
caacgttttttcaacgttagatgaacgttaaaacaacgttttgtgccagc
tgggacgcTTGGGAGGGCCGCTTTAAAAATCTATTTCGACCATAAATCTT
TCATCGTGGACATATAAAACGACTGGACGCCTATCTTCTATTGCGTCTTT
GTAgtgagcttcgttgccgcctgtatttcaaaatagaTCCGACAAAATTC
CGtcacaattttatttctttgaattagtTAGGTAAAAGGATCGagagagc
ttgaacattactcgtaATTCACAAGAGAATAGTTCTCTAATTTTTAtaaa
gtttgcaatatattttatcaacatttttatcgctgaaatgcttttttcaa
cttttgaatcacttttatcattccaacaatttttttatgatttgaaaaaa
atagtatgcAAAATAGTCGAGAACCTGCGagtcataagaatatcataatt
tgaatctcacacactctaaaattatttcacacttttgagtcaaaatttag
aaattcggaattttgacaagctgacgatgattttgcctctgttatctttt
ttaTGCTGTAAATataagacttgagaagagtagaacatcagagacttttg
tcgaagtttggACGTTGCTAGCAAGGTTttcccaagaggtatatcatcaa
aatctattgtttcattttatgtttttaacgagGAGGCAACGAGGCTAGTA
GtgctttctacaaaaatacaaCAAAGGAGATGTATGTCCAGCCGTTTTAT
AAATTTATGGTCTCATCTTTTAAATTGAAAGAATCAAGACAGAAGGCTAA
ATGTCTGGCTATCCTGTAACTATCTTTTTTTTTGTGTCTTTGATAGCAAG
ATAGCGGTGGCCCACTTGTTGCAGAGTTAAAGGAGCCGAGTGAGACTGGA
CAGTTTTATTTGGTTGGCGTTGTCAGTTGGGCTAAAGGATGTGCAGATCC
AAGATATCCTGGAGTTTATACAAATATAGCTCACTTGAGAATTTGGATAG
AAGAAAACTTAGCTAAAAATCATGGTAAGGAAATATATATAAATTATTAG
GTTACTATATTATCACAGTATTGAAGGGTTACTCATTCTGTGACATGAAA
GTAATCTTAATTGGGCGAGGGTTccttttacttttgtttttatgtAATTT
GACAGACCCGAAtacacaccccttctcacagacccggtatgaTTTATTCA
GCCAAtggagataaaaataacggcctgaaacttgatggggattgatattc
ccgtattttttatggcttgggatttcaattattttgttttcaagtcagaa
aattcagtggggatggaaaaaatagcatgatattttgcagtaaggattgg
tttatttgattattttcggtgcggacaaaaattggaggataattttccac
cggggcgggacgatattttggacaatttttccagcgggaaggggtcccag
tgggtctgtgagaagggggtgggAGAAGTTCCAATTTATTCACGTTTGTT
TATTGATATACTTCTATATATTATTTGGACCtaacttctttaaagatttt
tttcatcCGTGGTAAtatctattgttttattttcttcttgaCTTAGCAGT
TTAATCTTTGAAATGTGAGTTATGGAAATGCTCTCCAGTAGACatggttc
ttattttcacaaaaatacgagaataaaaattagaaaagtcCGTCTGTGAC
TATTGGAAAAATCCTGagtaaaataagaaaatacttAGAATTTTGATTAA
GGATTATCAGCCTTTGTTGAGTTGCTGATGCCTTTTCTAAATcctaattt
tgataaaatagcaATTGTGAATTAAATAGCAAAATGATTGGTGTCAAAGT
AATAAGTAAGATTGAATCAATCTCCCGATACTTTTTCTCAAGAGTTtgga
atatttcttttttggcCATAACCTCTTTCCTACCAAATTTCTCAACCACA
GTTTTCTACGTCGAAAGCGCATATTTCATGCCAGGAtagtgtctacctat
tgttatattatgctgatataagcaaaaaaatatttttttgtctttttctt
tcattaGTATTTCCAGCATCAATTAACCAGACATTGGCAtacaaataagg
taaaaatccTAATGAGCAGAATTGTGTATACTACAATAGTCACACTTTAG
GAATTATTCTAATTCTGATTATTTCTAGTGATAATGCAGTGTAAAAAGGG
TATAAAGtgtgtctcaatataatctgtaGTGGAGACAGAAATAGCTATAT
CTTTCGATATAATTCgaataaaaaagcggttttgaatattttgactGAGA
TAATATTATTGAGTTCTTTCGGAAGTTACAACCTCTTGTCTCTGCTGCAT
AAATTTTTGGGACAGACTTTGATAAGTATACGTTTTAGTCGGAAGTTTGA
ATGCTTGAACCCTATAACTCGTCAATATAAGGAGATCACATCTGGTATAG
CTGTATAGGTAATATTTGATCATTTTCCGAAAAACTAAATcgttaaattt
ttctaatttatttAGTAAAGATCATTTCAATTTGTGCAGGTAATGCAAGA
TTTGCTTGAGAAGCGATAGAAGGAGGGTTCAGAAGAAATTTTAATTCCTT
TCACCATTAGAAGACGCCAGANATAGAAGGAGAGTCCAGaagaaatttta
attctttgaCCATTAGAAGACGCCAGAGAAGGAGTGGCATGAGAAATTAg
aaaaggcaaattttgtacTTATTTTTGCTTTAACTATTATAGAAAAAATA
TGATGATTTAAATCGTCCATAAATCTAAAACAATTGTATAAACggg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008927XLOC_008927Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015981-exon-sc0000224-1491911889:224473..224950TCONS_00015981-exon-sc0000224-1491911889:224473..224950Clytia hemisphaericaexon
TCONS_00015981-exon-sc0000224-1510915933:224473..224950TCONS_00015981-exon-sc0000224-1510915933:224473..224950Clytia hemisphaericaexon
TCONS_00015981-exon-sc0000224-1575043694:224473..224950TCONS_00015981-exon-sc0000224-1575043694:224473..224950Clytia hemisphaericaexon
TCONS_00015981-exon-sc0000224-1491911889:225579..225823TCONS_00015981-exon-sc0000224-1491911889:225579..225823Clytia hemisphaericaexon
TCONS_00015981-exon-sc0000224-1510915933:225579..225823TCONS_00015981-exon-sc0000224-1510915933:225579..225823Clytia hemisphaericaexon
TCONS_00015981-exon-sc0000224-1575043694:225579..225823TCONS_00015981-exon-sc0000224-1575043694:225579..225823Clytia hemisphaericaexon
TCONS_00015981-exon-sc0000224-1491911889:226100..226204TCONS_00015981-exon-sc0000224-1491911889:226100..226204Clytia hemisphaericaexon
TCONS_00015981-exon-sc0000224-1510915933:226100..226204TCONS_00015981-exon-sc0000224-1510915933:226100..226204Clytia hemisphaericaexon
TCONS_00015981-exon-sc0000224-1575043694:226100..226204TCONS_00015981-exon-sc0000224-1575043694:226100..226204Clytia hemisphaericaexon
TCONS_00015981-exon-sc0000224-1491911889:227669..227846TCONS_00015981-exon-sc0000224-1491911889:227669..227846Clytia hemisphaericaexon
TCONS_00015981-exon-sc0000224-1510915933:227669..227846TCONS_00015981-exon-sc0000224-1510915933:227669..227846Clytia hemisphaericaexon
TCONS_00015981-exon-sc0000224-1575043694:227669..227846TCONS_00015981-exon-sc0000224-1575043694:227669..227846Clytia hemisphaericaexon
TCONS_00015981-exon-sc0000224-1491911889:228880..228921TCONS_00015981-exon-sc0000224-1491911889:228880..228921Clytia hemisphaericaexon
TCONS_00015981-exon-sc0000224-1510915933:228880..228921TCONS_00015981-exon-sc0000224-1510915933:228880..228921Clytia hemisphaericaexon
TCONS_00015981-exon-sc0000224-1575043694:228880..228921TCONS_00015981-exon-sc0000224-1575043694:228880..228921Clytia hemisphaericaexon
TCONS_00015981-exon-sc0000224-1491911889:229362..229618TCONS_00015981-exon-sc0000224-1491911889:229362..229618Clytia hemisphaericaexon
TCONS_00015981-exon-sc0000224-1510915933:229362..229618TCONS_00015981-exon-sc0000224-1510915933:229362..229618Clytia hemisphaericaexon
TCONS_00015981-exon-sc0000224-1575043694:229362..229618TCONS_00015981-exon-sc0000224-1575043694:229362..229618Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000224supercontigsc0000224:224473..229618 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.194221	0.505057	0.29321	0	0	0.0344952	0.332936	0.428575	0.300055	0.101364	0.163977	0.0628963	0.150699	0.313004	17.737	19.3507	3.71793	3.56169	0.584974	0.32407	0	0	0.255158	0.0674859	0.31279	0.12407	0	0.0473699	0	0.183027
Blast
[Close]
BLAST of TCONS_00015981 vs. Swiss-Prot (Human)
Match: CTRB1 (Chymotrypsinogen B OS=Homo sapiens GN=CTRB1 PE=2 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 2.594e-39
Identity = 87/257 (33.85%), Postives = 133/257 (51.75%), Query Frame = 1 
Query:  247 CGTRMINST-QLYKRIIRGKDSTPGEIPWMVAIM-IDGEYRCGGTLISKKWVISAAHCNIYSGDTLILGAYDIDVTIKEEFNSRQVRKAKKVINNEQHDIPFLNSNDIALIELDFEVKFDRYVRPACVVGSNQRPFDGSEVTISGWG---LRLQRSKNVLQKVEVNVMGDAECTSKYSREYHIDSSMICAAAPGKDACQQDSGGPLVAELKEPSETGQFYLVGVVSWAKGCADPRYPGVYTNIAHLRIWIEENLAKN 1002
            CG   I+       RI+ G+D+ PG  PW V++    G + CGG+LIS+ WV++AAHC + + D ++ G +D      +E N  QV K  KV  N +  I  +N NDI L++L    +F + V   C+  ++     G+    +GWG       ++ + LQ+  + ++ +AEC   + R   I   MICA A G  +C  DSGGPLV +     + G + LVG+VSW         PGVY  +  L  W+++ LA N
Sbjct:   19 CGVPAIHPVLSGLSRIVNGEDAVPGSWPWQVSLQDKTGFHFCGGSLISEDWVVTAAHCGVRTSDVVVAGEFDQG---SDEEN-IQVLKIAKVFKNPKFSILTVN-NDITLLKLATPARFSQTVSAVCLPSADDDFPAGTLCATTGWGKTKYNANKTPDKLQQAALPLLSNAECKKSWGR--RITDVMICAGASGVSSCMGDSGGPLVCQ-----KDGAWTLVGIVSWGSDTCSTSSPGVYARVTKLIPWVQKILAAN 263
The following BLAST results are available for this feature:
BLAST of TCONS_00015981 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTRB12.594e-3933.85Chymotrypsinogen B OS=Homo sapiens GN=CTRB1 PE=2 S... [more]
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