|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015962 ID=TCONS_00015962|Name=TCONS_00015962|organism=Clytia hemisphaerica|type=transcript|length=2738bpRun BLAST on NCBI protein sequence of TCONS_00015962-protein >TCONS_00015962-protein ID=TCONS_00015962-protein|Name=TCONS_00015962-protein|organism=Clytia hemisphaerica|type=polypeptide|length=456bp MGRNRDDSLHHVQDLRQSAMSSSLFSIIILAYWDNVMGPMVSKIWKGNDKRun BLAST on NCBI transcript from alignment at sc0000224:109230..150297+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00015962 ID=TCONS_00015962|Name=TCONS_00015962|organism=Clytia hemisphaerica|type=transcript|length=41068bp|location=Sequence derived from alignment at sc0000224:109230..150297+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000224:109230..150297+ >TCONS_00015962 ID=TCONS_00015962|Name=TCONS_00015962|organism=Clytia hemisphaerica|type=CDS|length=16452bp|location=Sequence derived from alignment at sc0000224:109230..150297+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
No biomaterial libraries express this feature.
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00015962 vs. Swiss-Prot (Human)
Match: CI072 (Guanine nucleotide exchange C9orf72 OS=Homo sapiens GN=C9orf72 PE=1 SV=2) HSP 1 Score: 200.29 bits (508), Expect = 2.632e-55 Identity = 133/437 (30.43%), Postives = 220/437 (50.34%), Query Frame = 2
Query: 272 LAYWDNVMGPMVSKIW-KGNDKVEASDETVNYISNHTLSGELCRQTEKQTVDPKLCILPDLGYLFNAFIFTGNSKMGPTITSLSFVIAHEDLNKFLMLQD-----------------HLERQ--VKVIVLRYRVFQQKDVGSAIKCVSPSLKKLIKTIDMLAENNIPPEICVATTIFGEGENAALLLDSRFLMRSLTSHLQTCGCTVVVGQSADKVNLMIHTLSLFLGKNECFCSTLASDENTHQFYQDLWLQGIIGKAEEN--MSSKDVLLNTYPVTLINVDEKLVYQTIYASVHAIKRRDNLKTEASLLLHGTELSN------IPTRELFTDD---FGDI---SLLVQKFITQLFSIPNNCSIRRNHIENFKQTLQRKASTFLSYVENKSNNGRSVLTQPQLQLLKQDLGLSCEADFRVVLATAEKHRPGLSLFL 1480
AYWDN++GP V IW ++V SD + +++NHTL+GE+ R E +D K +L + G + + IF GN + LS ++ +L+ +L L H ERQ V+ I+L + S I ++ + +++ + + +++P EI +A T+ + ++ FL+ +++SHLQTCGC+VVVG SA+KVN ++ TL LFL E CS L E++ ++ L++QG++ + + + + V+ YP T I+VD V Q H +R +++E + T + I T E FT D F D+ LV+ F+ Q+F + S+R + F L RKA T + Y+E+ + G+ L+ LK DL L+ E D +++A AEK +PGL F+
Sbjct: 30 FAYWDNILGPRVRHIWAPKTEQVLLSDGEITFLANHTLNGEILRNAESGAIDVKFFVLSEKGVIIVSLIFDGNWNGDRSTYGLSIILPQTELSFYLPLHRVCVDRLTHIIRKGRIWMHKERQENVQKIILEGTERMEDQGQSIIPMLTGEVIPVMELLSSMKSHSVPEEIDIADTVLND-DDIGDSCHEGFLLNAISSHLQTCGCSVVVGSSAEKVNKIVRTLCLFLTPAERKCSRLCEAESSFKYESGLFVQGLLKDSTGSFVLPFRQVMYAPYPTTHIDVDVNTVKQMPPCHEHIYNQRRYMRSELTAFWRATSEEDMAQDTIIYTDESFTPDLNIFQDVLHRDTLVKAFLDQVFQLKPGLSLRSTFLAQFLLVLHRKALTLIKYIEDDTQKGKKPFK--SLRNLKIDLDLTAEGDLNIIMALAEKIKPGLHSFI 463 The following BLAST results are available for this feature:
BLAST of TCONS_00015962 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.