TCONS_00015962-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00015962-protein
Unique Name	TCONS_00015962-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	456

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00015962-protein ID=TCONS_00015962-protein|Name=TCONS_00015962-protein|organism=Clytia hemisphaerica|type=polypeptide|length=456bp
MGRNRDDSLHHVQDLRQSAMSSSLFSIIILAYWDNVMGPMVSKIWKGNDK
VEASDETVNYISNHTLSGELCRQTEKQTVDPKLCILPDLGYLFNAFIFTG
NSKMGPTITSLSFVIAHEDLNKFLMLQDHLERQVKVIVLRYRVFQQKDVG
SAIKCVSPSLKKLIKTIDMLAENNIPPEICVATTIFGEGENAALLLDSRF
LMRSLTSHLQTCGCTVVVGQSADKVNLMIHTLSLFLGKNECFCSTLASDE
NTHQFYQDLWLQGIIGKAEENMSSKDVLLNTYPVTLINVDEKLVYQTIYA
SVHAIKRRDNLKTEASLLLHGTELSNIPTRELFTDDFGDISLLVQKFITQ
LFSIPNNCSIRRNHIENFKQTLQRKASTFLSYVENKSNNGRSVLTQPQLQ
LLKQDLGLSCEADFRVVLATAEKHRPGLSLFLVEAIQRGEDSFQVTQAPV
KGRVFY

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_008922	XLOC_008922	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00015962	TCONS_00015962	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR027819	C9orf72-like

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027819	C9orf72-like protein family	PFAM	PF15019	C9orf72-like	coord: 60..303 e-value: 8.4E-51 score: 172.7

Blast

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BLAST of TCONS_00015962-protein vs. Swiss-Prot (Human)
Match: CI072 (Guanine nucleotide exchange C9orf72 OS=Homo sapiens GN=C9orf72 PE=1 SV=2)

HSP 1 Score: 199.904 bits (507), Expect = 1.263e-58
Identity = 133/437 (30.43%), Postives = 220/437 (50.34%), Query Frame = 0

Query:   30 LAYWDNVMGPMVSKIW-KGNDKVEASDETVNYISNHTLSGELCRQTEKQTVDPKLCILPDLGYLFNAFIFTGNSKMGPTITSLSFVIAHEDLNKFLMLQD-----------------HLERQ--VKVIVLRYRVFQQKDVGSAIKCVSPSLKKLIKTIDMLAENNIPPEICVATTIFGEGENAALLLDSRFLMRSLTSHLQTCGCTVVVGQSADKVNLMIHTLSLFLGKNECFCSTLASDENTHQFYQDLWLQGIIGKAEEN--MSSKDVLLNTYPVTLINVDEKLVYQTIYASVHAIKRRDNLKTEASLLLHGTELSN------IPTRELFTDD---FGDI---SLLVQKFITQLFSIPNNCSIRRNHIENFKQTLQRKASTFLSYVENKSNNGRSVLTQPQLQLLKQDLGLSCEADFRVVLATAEKHRPGLSLFL 432
             AYWDN++GP V  IW    ++V  SD  + +++NHTL+GE+ R  E   +D K  +L + G +  + IF GN     +   LS ++   +L+ +L L                   H ERQ  V+ I+L      +    S I  ++  +  +++ +  +  +++P EI +A T+  + ++        FL+ +++SHLQTCGC+VVVG SA+KVN ++ TL LFL   E  CS L   E++ ++   L++QG++  +  +  +  + V+   YP T I+VD   V Q      H   +R  +++E +     T   +      I T E FT D   F D+     LV+ F+ Q+F +    S+R   +  F   L RKA T + Y+E+ +  G+       L+ LK DL L+ E D  +++A AEK +PGL  F+
Sbjct:   30 FAYWDNILGPRVRHIWAPKTEQVLLSDGEITFLANHTLNGEILRNAESGAIDVKFFVLSEKGVIIVSLIFDGNWNGDRSTYGLSIILPQTELSFYLPLHRVCVDRLTHIIRKGRIWMHKERQENVQKIILEGTERMEDQGQSIIPMLTGEVIPVMELLSSMKSHSVPEEIDIADTVLND-DDIGDSCHEGFLLNAISSHLQTCGCSVVVGSSAEKVNKIVRTLCLFLTPAERKCSRLCEAESSFKYESGLFVQGLLKDSTGSFVLPFRQVMYAPYPTTHIDVDVNTVKQMPPCHEHIYNQRRYMRSELTAFWRATSEEDMAQDTIIYTDESFTPDLNIFQDVLHRDTLVKAFLDQVFQLKPGLSLRSTFLAQFLLVLHRKALTLIKYIEDDTQKGKKPFK--SLRNLKIDLDLTAEGDLNIIMALAEKIKPGLHSFI 463

The following BLAST results are available for this feature:

BLAST of TCONS_00015962-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00015962-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CI072	1.263e-58	30.43	Guanine nucleotide exchange C9orf72 OS=Homo sapien...	[more]

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TCONS_00015962-protein (polypeptide) - C. hemisphaerica