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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015956 ID=TCONS_00015956|Name=TCONS_00015956|organism=Clytia hemisphaerica|type=transcript|length=1726bp
atttcttttgatttaaaaataattggcTTGAAAGTGATATTTGACTTGAC
CTAACTTGACAAGAATTTTTCCTGAGATATTAAGGGTGTTACAGAGAGTG
Gtgtggtatgtttttttttaatacagtgttgtaaagttttttagaaaatt
taaaggaggTGTACCAGAAAGTACCATTACTAAGAATTAAagggtggtat
acctatttgAGAGGGAAATCAACTAAGTACAGGGTACTTAACGGTGGTGT
GTCATTTCTCAATGGTGATATCAAGATTGCACCGGCGGTACAAAGGGGTG
GTATAATTATTTTAAGAGGCAAACTAAACTTAGTACCagggtactaagtg
gtggtggtctcagataaatttcaaaaaacaagaaagtacaacttttcggC
ACTGGTCCAGTACCACAACTTGGTACCCCCCCCCTCCTGACGACAATAAT
TATATTGGAAACCGAGAGGGAAAGATGGTTGGATGTTATCATACGGTTGA
ATATTCATCACCAATAGGCCCATAATATTTAATGTCAATTTCAAAATCGG
CATCTTCGAAGTTTTCCTCAAAATAATCAACCGTTTTAATTCTCATTCCT
TTCATAATTTCTCGAAATTCCGGAATATTCACTTTCGTTAAATCTAAAGC
TTCCAGATAAACCAGATTGACAGGTAATGTCTTGAACCACGAAAACTCTT
CAACTGACAGCTTGTaattgacgtcataatttgTTTCTATGGAGAATTCC
TTCAAGTACTTCATACGATGTAGTATATCTACCATACTTTTTATGTTCCA
TTTTTCCACGGCAAAATTCCAAGTACTTATTGTTGTAAAAGGTAGATCAA
TGAGCTTCTCCATAGGTGGTAAGTTGCCTTTTTCAAAGTCTCCATGACCG
AATGAGATatctttcaaatatttcatttgTCGAAATAAATCAGCAAATTT
CAACAAAGTGGGAACATCGTTCTCAATTCTCAAGCTGCGACTTTCAATTT
TGGTAACTCTAATGTTTAATTTAACCATTAGCTCAATATCCTTCAAAGTA
TACAAATAACTGCCGTCTTCATAAATAGGCTCCTTCAAGACCACCTTACA
CTTTCCTAAATGAGCAACCGTGCGAATGAAATCCTCAACATTTTCTTCGT
TAACAAAAATACAATCTACCACaagaaaagaaatcgaaaatttgtCAGCA
AACATTTTGAATTGGTCAAAAGTCCAACGATGTTGGGTATATCGAAAACA
ATCATGATTAATAATCATTCTTTCAACATTGATGGACTTCATACATTCAT
ACAACTGCATTATTTCCCCATTGTTGGTCATTTTGAAAGCGTTTGTGTTG
ACAACCACTGGTAGTTGTGTAATGAATCTTAGTTGAGATTGCTGAGCAGT
TACAGCCTTTTCATAGTAGTTGACTGTGTCTATATGTAGGAGTTTCAAAT
GAGGTAGCATTGCGACTAATTCCAGCCATGAGCAACATGAGAGCTGCCGA
GTATGTATTTCTCGTATGGGAAAACGCGAGATTTGCTGTACAAAATCCAT
ATCTTTGTTGTGTCTGTTGAATCTGGGCTTTGACCACATCCGTTGGAGAG
CGAGAGTACGAAGTTTCTTCGAAGTGAAAGATATTTGTTTGGCACTTTTT
ATATCAAGGTACGAAATGATGTTGCTGATTAGTTCATTTGGTAAATTATC
CATCTTTTATATATTCTTACTTTAag Run BLAST on NCBI protein sequence of TCONS_00015956-protein >TCONS_00015956-protein ID=TCONS_00015956-protein|Name=TCONS_00015956-protein|organism=Clytia hemisphaerica|type=polypeptide|length=404bp
MDNLPNELISNIISYLDIKSAKQISFTSKKLRTLALQRMWSKPRFNRHNK
DMDFVQQISRFPIREIHTRQLSCCSWLELVAMLPHLKLLHIDTVNYYEKA
VTAQQSQLRFITQLPVVVNTNAFKMTNNGEIMQLYECMKSINVERMIINH
DCFRYTQHRWTFDQFKMFADKFSISFLVVDCIFVNEENVEDFIRTVAHLG
KCKVVLKEPIYEDGSYLYTLKDIELMVKLNIRVTKIESRSLRIENDVPTL
LKFADLFRQMKYLKDISFGHGDFEKGNLPPMEKLIDLPFTTISTWNFAVE
KWNIKSMVDILHRMKYLKEFSIETNYDVNYKLSVEEFSWFKTLPVNLVYL
EALDLTKVNIPEFREIMKGMRIKTVDYFEENFEDADFEIDIKYYGPIGDE
YSTV Run BLAST on NCBI transcript from alignment at sc0000222:387945..389670 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015956 ID=TCONS_00015956|Name=TCONS_00015956|organism=Clytia hemisphaerica|type=transcript|length=1726bp|location=Sequence derived from alignment at sc0000222:387945..389670 (Clytia hemisphaerica)
ctTAAAGTAAGAATATATAAAAGATGGATAATTTACCAAATGAACTAATC
AGCAACATCATTTCGTACCTTGATATAAAAAGTGCCAAACAAATATCTTT
CACTTCGAAGAAACTTCGTACTCTCGCTCTCCAACGGATGTGGTCAAAGC
CCAGATTCAACAGACACAACAAAGATATGGATTTTGTACAGCAAATCTCG
CGTTTTCCCATACGAGAAATACATACTCGGCAGCTCTCATGTTGCTCATG
GCTGGAATTAGTCGCAATGCTACCTCATTTGAAACTCCTACATATAGACA
CAGTCAACTACTATGAAAAGGCTGTAACTGCTCAGCAATCTCAACTAAGA
TTCATTACACAACTACCAGTGGTTGTCAACACAAACGCTTTCAAAATGAC
CAACAATGGGGAAATAATGCAGTTGTATGAATGTATGAAGTCCATCAATG
TTGAAAGAATGATTATTAATCATGATTGTTTTCGATATACCCAACATCGT
TGGACTTTTGACCAATTCAAAATGTTTGCTGacaaattttcgatttcttt
tcttGTGGTAGATTGTATTTTTGTTAACGAAGAAAATGTTGAGGATTTCA
TTCGCACGGTTGCTCATTTAGGAAAGTGTAAGGTGGTCTTGAAGGAGCCT
ATTTATGAAGACGGCAGTTATTTGTATACTTTGAAGGATATTGAGCTAAT
GGTTAAATTAAACATTAGAGTTACCAAAATTGAAAGTCGCAGCTTGAGAA
TTGAGAACGATGTTCCCACTTTGTTGAAATTTGCTGATTTATTTCGAcaa
atgaaatatttgaaagatATCTCATTCGGTCATGGAGACTTTGAAAAAGG
CAACTTACCACCTATGGAGAAGCTCATTGATCTACCTTTTACAACAATAA
GTACTTGGAATTTTGCCGTGGAAAAATGGAACATAAAAAGTATGGTAGAT
ATACTACATCGTATGAAGTACTTGAAGGAATTCTCCATAGAAAcaaatta
tgacgtcaattACAAGCTGTCAGTTGAAGAGTTTTCGTGGTTCAAGACAT
TACCTGTCAATCTGGTTTATCTGGAAGCTTTAGATTTAACGAAAGTGAAT
ATTCCGGAATTTCGAGAAATTATGAAAGGAATGAGAATTAAAACGGTTGA
TTATTTTGAGGAAAACTTCGAAGATGCCGATTTTGAAATTGACATTAAAT
ATTATGGGCCTATTGGTGATGAATATTCAACCGTATGATAACATCCAACC
ATCTTTCCCTCTCGGTTTCCAATATAATTATTGTCGTCAGGAGGGGGGGG
GTACCAAGTTGTGGTACTGGACCAGTGccgaaaagttgtactttcttgtt
ttttgaaatttatctgagaccaccaccacttagtaccctGGTACTAAGTT
TAGTTTGCCTCTTAAAATAATTATACCACCCCTTTGTACCGCCGGTGCAA
TCTTGATATCACCATTGAGAAATGACACACCACCGTTAAGTACCCTGTAC
TTAGTTGATTTCCCTCTcaaataggtataccaccctTTAATTCTTAGTAA
TGGTACTTTCTGGTACAcctcctttaaattttctaaaaaactttacaaca
ctgtattaaaaaaaaacataccacaCCACTCTCTGTAACACCCTTAATAT
CTCAGGAAAAATTCTTGTCAAGTTAGGTCAAGTCAAATATCACTTTCAAg
ccaattatttttaaatcaaaagaaat Coding sequence (CDS) from alignment at sc0000222:387945..389670 >TCONS_00015956 ID=TCONS_00015956|Name=TCONS_00015956|organism=Clytia hemisphaerica|type=CDS|length=1215bp|location=Sequence derived from alignment at sc0000222:387945..389670 (Clytia hemisphaerica)
ATGGATAATTTACCAAATGAACTAATCAGCAACATCATTTCGTACCTTGA
TATAAAAAGTGCCAAACAAATATCTTTCACTTCGAAGAAACTTCGTACTC
TCGCTCTCCAACGGATGTGGTCAAAGCCCAGATTCAACAGACACAACAAA
GATATGGATTTTGTACAGCAAATCTCGCGTTTTCCCATACGAGAAATACA
TACTCGGCAGCTCTCATGTTGCTCATGGCTGGAATTAGTCGCAATGCTAC
CTCATTTGAAACTCCTACATATAGACACAGTCAACTACTATGAAAAGGCT
GTAACTGCTCAGCAATCTCAACTAAGATTCATTACACAACTACCAGTGGT
TGTCAACACAAACGCTTTCAAAATGACCAACAATGGGGAAATAATGCAGT
TGTATGAATGTATGAAGTCCATCAATGTTGAAAGAATGATTATTAATCAT
GATTGTTTTCGATATACCCAACATCGTTGGACTTTTGACCAATTCAAAAT
GTTTGCTGacaaattttcgatttcttttcttGTGGTAGATTGTATTTTTG
TTAACGAAGAAAATGTTGAGGATTTCATTCGCACGGTTGCTCATTTAGGA
AAGTGTAAGGTGGTCTTGAAGGAGCCTATTTATGAAGACGGCAGTTATTT
GTATACTTTGAAGGATATTGAGCTAATGGTTAAATTAAACATTAGAGTTA
CCAAAATTGAAAGTCGCAGCTTGAGAATTGAGAACGATGTTCCCACTTTG
TTGAAATTTGCTGATTTATTTCGAcaaatgaaatatttgaaagatATCTC
ATTCGGTCATGGAGACTTTGAAAAAGGCAACTTACCACCTATGGAGAAGC
TCATTGATCTACCTTTTACAACAATAAGTACTTGGAATTTTGCCGTGGAA
AAATGGAACATAAAAAGTATGGTAGATATACTACATCGTATGAAGTACTT
GAAGGAATTCTCCATAGAAAcaaattatgacgtcaattACAAGCTGTCAG
TTGAAGAGTTTTCGTGGTTCAAGACATTACCTGTCAATCTGGTTTATCTG
GAAGCTTTAGATTTAACGAAAGTGAATATTCCGGAATTTCGAGAAATTAT
GAAAGGAATGAGAATTAAAACGGTTGATTATTTTGAGGAAAACTTCGAAG
ATGCCGATTTTGAAATTGACATTAAATATTATGGGCCTATTGGTGATGAA
TATTCAACCGTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015956-exon-sc0000222-1491911889:387945..389670 | TCONS_00015956-exon-sc0000222-1491911889:387945..389670 | Clytia hemisphaerica | exon |
| TCONS_00015956-exon-sc0000222-1510915933:387945..389670 | TCONS_00015956-exon-sc0000222-1510915933:387945..389670 | Clytia hemisphaerica | exon |
| TCONS_00015956-exon-sc0000222-1575043694:387945..389670 | TCONS_00015956-exon-sc0000222-1575043694:387945..389670 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000222 | supercontig | sc0000222:387945..389670 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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