TCONS_00015908 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015908
Unique NameTCONS_00015908
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1881

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015908 ID=TCONS_00015908|Name=TCONS_00015908|organism=Clytia hemisphaerica|type=transcript|length=1881bp
TATAATTCGAAAAGCTAAAGAATTGCCATGTGAACATCTAATGTGTTCAG
AGTGTTTATTGTACTAcgaaaataaggaaattgaaaaagtcaaaagAGGA
TTAGATGAAAAAGATGCAGAATTTCTATGTTCGATATGTCAAAAACGTTA
CCACCGCAATAAGAAAGTAGCTGTGAAGTTCATGGACCGGCTGATTCAAA
ACGATACTCAATTTAAATGTTTGCAAACGGAATGCAAATGGATTGGCTCA
TTAAATGACTACAAGGTGCACAAGCGAAAATGTTTCGAGGAGGTAGAATG
CCAATATTCTTCTTTCGGTTGCCGGCAAAAACTGAACAAAGGAAAGGTCA
AGAATCATAACGAAGAGAATCAAGACCATCACGAGATATTACTTTTAAAG
ACCGTACAAAATTTAGTGGAAGAACGCAGAGAAAACCGACAACTCATCCA
AAATTTGGAACAACATGCCGTTAAAACCGACCAAGAACTAAGTATGCTTA
AAACCgaaaataaagatttagaaTCAAAGGTTGAAAATCACTCAGCTCAT
CTAAAACTTGAACAAATCTTAAATACTATAGAATCTTATCAAGAACTTCA
AAAAATGGTCATGAATGACAGCACAGAGCTGAAAACAAAGGTTAAGAAAC
AATCAGACTTACTCACCAAAATGGAACAAAAATTGTGTGATTCAGATGAT
AAGCAacaacaaacattgaaaaacCGAATAACACAATTAGAAAGAGAAAA
TTCAAACCTAAGGCAGAATATTGATCGCCAAAAAGCTCGCATAAATCAGT
TGGAAAGCCAAATGAACAATTATgtgaaaaaatctgaatttgaagaaagt
acagaagaatggaaaaataaGCTGGTGGAAGTCGAGAAAGATGTCATCAA
CctgaaaatttttgctgaacAAGCTAGTCAACTCCATACTGGTATATGTA
ATTGGAACACGATGGATTATTGCAGTGGTATAATTTATCAGAAAAGATAT
GAGAAGATACAATCAGTGAAAAGCTGGAgtgaatttgttgaaaaaatttc
ggCCAGTGATTATAATGGGAGTTGTGAATACCTTCAAAATATGGTTAGAG
CTATTGCAGATTATAGCAACTACACAATTTATCCTGAGACCTATGCAAGT
CGACTGGAAGTTCTggcaaactcgttagaaaaaggtACACATAGAGAAGA
TTTTCTGAAGATAAATACTTGTTATGATTTCAATGAGATATCTGTTGTTT
TCCTATCTGACGAAGAAGATACTAACTTCATGAAGAAATTATCATCAGAG
GGAGATGATTGGTACAGACAATCTCCCATTATGGCAACTCGATATGTTGA
TGAACGTTTTGAAATTGCAGTTGAGTTAGGATTTGATCGAGAACATATCT
ATCTACTGCATGACTATGAAGAAAGTGAGAGCGTCAAAATCCCAGTTAAT
GGAGAAGCTATTTCGCTTTATGGACCCAGTTACCAGATCCTAAATTCTAC
ATGTATAATCTTTGATTTACAAGGAAGAGAAAAACGCATCGGATTATCTT
GAGAATGATTCATTGATTGGAATCTAACGAGTTCTAGAGTTTTTAATCTG
GTTTGATTGGCTTTCATAGCGAGAGCCTTGGAAGTGGAAATTTTATGAGA
AGACTTTCTCAAAGTCAATGCCTTTGAGACTTAAGGAAAATATATGTATC
TTTGTATGAAGGaagtgaaagttttaaaaagcattgaatCGAAAGATGAC
GTAACGTATTACAAAACCGAGGAAGAATATTTGTACGCTACAGTGTGTCT
AGAAAAATCAGAACCGATTTAATATTAAACTAAGTCTTTTTCCTatcccc
tgcttattcggactcccccgtctattcggcc
Run BLAST on NCBI

transcript from alignment at sc0000222:337240..344342+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015908 ID=TCONS_00015908|Name=TCONS_00015908|organism=Clytia hemisphaerica|type=transcript|length=7103bp|location=Sequence derived from alignment at sc0000222:337240..344342+ (Clytia hemisphaerica)
TATAATTCGAAAAGCTAAAGAATTGCCATGTGAACATCTAATGTGTTCAG
AGTGTTTATTGTACTAcgaaaataaggaaattgaaaaagtcaaaaggttt
gttttttaattcggtAAAGGTTACACAGGCACTACATATCAGCTCTattc
attacacgtttttttagaacaaactatataagaacaaaaggcttcgatgg
ccaaaatattaagaacaagctaagaatattttaagtttttttgcgGACTC
AAAAACATCTGATTTCCtataaaaatgggcaaaaatactcacagaatggt
gaaaataagaatatttttaggcttaaaatataaagatttaagaatatcca
aaggcttcaaaatttttggatgttcttataaaaaaacgtgtatcgatact
agtcttatttttttttcaagcctGGACGGACGCCAAAACTTTCTTTATTG
ATCTTACATTAGGGCATATGAGTGATGCAAGTTGAGCTAGTCTAGTTAGT
AAGTTCGGcagtgaaattaaaatgaattctaaatttttctcttctttgat
ATTTTAGCAGAGGATTAGATGAAAAAGATGCAGAATTTCTATGTTCGATA
TGTCAAAAACGTTACCACCGCAATAAGGTATTCATGTCAATTCGTTTTAA
GTGTGCACTTATGTTTGCTTTGCTTTTCGTTTTCCAAACAATACTTCAAA
TCTAACAAATCATAtactgttgaaaagataattcagagcactAAAATTGT
CACagaaaagttattctaaaaaaaatgagaaaatgaagatgaaaaaaatg
aagaagaaaaaaatgaaaagaaactcctttttggacctaccacggaggtc
ctttaaattaactgatgttcgttcattcgttcgtctgttaccagcttctC
TCGgctcatgattttttgcacagtgataaaaaagtgacggagcccgattt
tcgaaaaaacgatgtttggacaaatttgggccaaaaagtgtaaaattgct
tcattagttttttctatttttttgcataaagatagagggcaaggttctct
aaaaaatgGCTCAAGcagtttttttggaaatttttttttggctgtaaaaa
tcggattttcttatttggggaaattcccttttgctatatttagggaaaat
gagcatttctcgaagttagcttggtatttttttcttatttttttgttgga
cttttgggaaaatcaccttTTATcgtagactatgttatagtctaagacga
attactatctaagaaaaaagcccaaagccgaagagaattcgcaaacgggt
ttttttgccgaaaagagttaacagtcagtagagttgccagtcttagacta
tacgattttggcacaaaatacaaaaacagcccAAATCGTACAAATTCGAG
TTTCCGTATGCGAGGCCAACTGTGTTCggtattcgaaaaaatcaaaacaa
aaaaaaagggGCGGGAGAGAAACCGAGATAAAAAAGAGAGTGTAGTTCCA
AGAAATATTATAGTTCTCTTTGGAGACCCTCTCCCTTTTATTCCCTTTAT
ATATTCTTGGAACTACACTCTCTTTTCTTNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAA
GAAGTATGTTAAAAGCAGTCTTTTAAAGTCCACAATTGAAATTAAGTAct
ttgtttgacatttttcaaagttgtcaAAGAACTGCTAACACCAGATgaaa
atactttaatgggataaattttcgcggggattaaatttcgcggttgagct
catccgcgaaattttaagattttgcggggattaattttcgagGATGGCAC
CATTGGGGggcattattttctcgattttgtgacttttactgtcaaatcat
gcatattggttgttgaaatacacattatttgcgcctctttgatgcaagta
aNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttttcaaat
ttccaacgggacttattttcgcggatgacacccaaatccgcgaaatccgc
gaaaattaatccccgcgaaaatttatcccattaaagtaactaTTTAAGAG
ATGAGGGTATTCACATATCTAATGAAACACTGCCTGTGATTCATAGGATT
CATAAGAAATATACAAACTTACTTACCTACTTAGTTTCTCTGTGTCTTTT
TGCTGTATGTAGACttgttgaaaaatcattttaaaacagcTTCTACAGAA
GCATACTTGAGGAATAAGTACTCCCTTAAACTAAGTTATCTTGTAGTCTC
AATAAAACAAGtgaaccaagaagaaaaaatccataatgagctggattttc
acagaaaaaccATAGATCCATCTTGTCCTTGTGTCTCTTCCCCAGTGACC
AGCGTGTTTTTGATCGTTTGAACCAAGCTCGGCCTTTAAACTTAGGCGAT
TTTCACCACGGAGCGACTAACCAGTCtcacggacgataacatcgtctact
tTTATCGTCAATAGGGAAATCAcgttaaaatatttattcacccCAGTATC
TACGACTATAAGTCGTCGATATTAACTTGTCGTCGATAATAATCTGCTCG
CTACACTtttttactctcttgctatttgtcctatttttatctgattctcg
tcatcaggtaggtccattcagcatgttgcttgtttggtacataaataaaa
acaagcgaCTCAGTTTTTCGTCTCTTCTGCTTTCTAGAGGTTCTAACCTT
TGTTTGATGCAAAAACTTTAAAGGAAAAATAACTAATCTCGGATACCTAA
TAAACAGAGGAGTTTGGAATACAATAAGTGGGGTAGCTGAAAAAATTctc
aagcggggggggggggggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtcagacatagta
gaaataaagcaaaaagtaatggtgggaacaattttatacaaactaaatcc
cgtaacaacaatcgtattatcatataacgcctatactactgtgtTACAtg
tattataaacgactccagtcaaagcataatatttttataatgaaaACAGG
TGTAATTATCTTCAAAGCGGATGATATCCTCTCCGCTAATCTATCTATTA
CAATTGTCTGCTTTTCTTCATTTGATAGCTTTTCACTTTTTCAGAAAGTA
GCTGTGAAGTTCATGGACCGGCTGATTCAAAACGATACTCAATTTAAATG
TTTGCAAACGGAATGCAAATGGATTGGCTCATTAAATGACTACAAGGTAT
TGTAAAGTtatcttaaaggttttgctttcacaaaagtgttcccgtttcat
atcagacacatatttcatatcaggacagggtctgcctattgttaaagtat
gctgatataagcaaaaaatgtttttcttttcctctttctaaccaatcttg
cttcacatccgtgtcaatccaaatgcgaaaaaagcttgtaaattaaaagt
gatgagtaagcaaacgatatcactcttatttaaaaacaaaacttttaatg
cCCAGCTCATTAAATAAAGTTTATTTAAATATCGGAGAAAAAAgggatta
aaatttgaaattatttaactTTCAATCAATTTCTCTTTCAGGTGCACAAG
CGAAAATGTTTCGAGGAGGTAGAATGCCAATATTCTTCTTTCGGTTGCCG
GCAAAAAGTATTTAGTgatgttatttatttttctattacTCCTCTCACTG
GTTTACAACTGGTTATTTTTTTCCGTCGCCAAAAAAAATAGAATCATGTT
TGAAAattagtaagtaagtctgcaaccgcagtctgaggcgacccgaaggc
tcctctttagataactatctacccgaaggtagggggaGGGCatcactctt
tctccctggattgctccactgacccttgatccttctcttaattgctgagc
attaagcagagaggcatcaagtaccattttgggaatcttcggtatgaccc
ggctgggggttgaacccacaaccttgggAACCGAAgtcggatgctctacc
actgcactacgatcgcttgaaaattgaaattacaacaaagtaGAACACTG
AAGTACATGTTTTTATATAAGTATAGGGAAAATTTTGTGAGCTTTATTAT
GCTTGGCACAATgaattttttgagtttcaaaaattcTTATGTACTGGtgc
aatttgcaattttttgcaattttagagattttaaaaGATGCTTTGAAATT
CAGTATATGCTTTAGGCAACCTTCAAGTGTTATGCTTATTAAAAGATGTG
TAGAACAAAACTATCTTTGAGGCGAAAACTTGTATTCTGTTAATTTTCAC
TAGCTGAACAAAGGAAAGGTCAAGAATCATAACGAAGAGAATCAAGACCA
TCACGAGATATTACTTTTAAAGACCGTACAAAATTTAGTGGAAGAACGCA
GAGAAAACCGACAACTCATCCAAAATTTGGAACAACATGCCGTTAAAACC
GACCAAGAACTAAGTATGCTTAAAACCgaaaataaagatttagaaTCAAA
GGTTGAAAATCACTCAGCTCATCTAAAACTTGAACAAATCTTAAATACTA
TAGAATCTTATCAAGAACTTCAAAAAATGGTCATGAATGACAGCACAGAG
CTGAAAACAAAGGTTAAGAAACAATCAGACTTACTCACCAAAATGGAACA
AAAATTGTGTGATTCAGATGATAAGCAacaacaaacattgaaaaacCGAA
TAACACAATTAGAAAGAGAAAATTCAAACCTAAGGCAGAATATTGATCGC
CAAAAAGCTCGCATAAATCAGTTGGAAAGCCAAATGAACAATTATgtgaa
aaaatctgaatttgaagaaagtacagaagaatggaaaaataaGCTGGTGG
AAGTCGAGAAAGATGTCATCAACctgaaaatttttgctgaacAAGCTAGT
CAACTCCATACTGGTATATGTAATTGGAACACGATGGATTATTGCAGTGG
TATAATTTATCAGAAAAGATATGAGAAGATACAATCAGTGAAAAGCTGGA
gtgaatttgttgaaaaaatttcggCCAGTGATTATAATGGGAGTTGTGAA
TACCTTCAAAATATGGTTAGAGCTATTGCAGATTATAGCAACTACACAAT
TTATCCTGAGACCTATGCAAGTCGACTGGAAGTTCTggcaaactcgttag
aaaaaggtACACATAGAGAAGATTTTCTGAAGATAAATACTTGTTATGAT
TTCAATGAGATATCTGTTGTTTTCCTATCTGACGAAGAAGATACTAACTT
CATGAAGAAATTATCATCAGAGGGAGATGATTGGTACAGACAATCTCCCA
TTATGGCAACTCGATATGTTGATGAACGTTTTGAAATTGCAGTTGAGTTA
GGATTTGATCGAGAACATATCTATCTACTGCATGACTATGAAGAAAGTGA
GAGCGTCAAAATCCCAGTTAATGGAGAAGCTATTTCGCTTTATGGACCCA
GTTACCAGATCCTAAATTCTACATGTATAATCTTTGATTTACAAGGAAGA
GAAAAACGCATCGGATTATCTTGAGAATGATTCATTGATTGGAATCTAAC
GAGTTCTAGAGTTTTTAATCTGGTTTGATTGGCTTTCATAGCGAGAGCCT
TGGAAGTGGAAATTTTATGAGAAGACTTTCTCAAAGTCAATGCCTTTGAG
ACTTAAGGAAAATATATGTATCTTTGTATGAAGGaagtgaaagttttaaa
aagcattgaatCGAAAGATGACGTAACGTATTACAAAACCGAGGAAGAAT
ATTTGTACGCTACAGTGTGTCTAGAAAAATCAGAACCGATTTAATATTAA
ACTAAGTCTTTTTCCTatcccctgcttattcggactcccccgtctattcg
gcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008886XLOC_008886Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015908-exon-sc0000222-1491911889:337240..337335TCONS_00015908-exon-sc0000222-1491911889:337240..337335Clytia hemisphaericaexon
TCONS_00015908-exon-sc0000222-1510915933:337240..337335TCONS_00015908-exon-sc0000222-1510915933:337240..337335Clytia hemisphaericaexon
TCONS_00015908-exon-sc0000222-1575043694:337240..337335TCONS_00015908-exon-sc0000222-1575043694:337240..337335Clytia hemisphaericaexon
TCONS_00015908-exon-sc0000222-1491911889:337800..337866TCONS_00015908-exon-sc0000222-1491911889:337800..337866Clytia hemisphaericaexon
TCONS_00015908-exon-sc0000222-1510915933:337800..337866TCONS_00015908-exon-sc0000222-1510915933:337800..337866Clytia hemisphaericaexon
TCONS_00015908-exon-sc0000222-1575043694:337800..337866TCONS_00015908-exon-sc0000222-1575043694:337800..337866Clytia hemisphaericaexon
TCONS_00015908-exon-sc0000222-1491911889:341634..341735TCONS_00015908-exon-sc0000222-1491911889:341634..341735Clytia hemisphaericaexon
TCONS_00015908-exon-sc0000222-1510915933:341634..341735TCONS_00015908-exon-sc0000222-1510915933:341634..341735Clytia hemisphaericaexon
TCONS_00015908-exon-sc0000222-1575043694:341634..341735TCONS_00015908-exon-sc0000222-1575043694:341634..341735Clytia hemisphaericaexon
TCONS_00015908-exon-sc0000222-1491911889:342081..342146TCONS_00015908-exon-sc0000222-1491911889:342081..342146Clytia hemisphaericaexon
TCONS_00015908-exon-sc0000222-1510915933:342081..342146TCONS_00015908-exon-sc0000222-1510915933:342081..342146Clytia hemisphaericaexon
TCONS_00015908-exon-sc0000222-1575043694:342081..342146TCONS_00015908-exon-sc0000222-1575043694:342081..342146Clytia hemisphaericaexon
TCONS_00015908-exon-sc0000222-1491911889:342793..344342TCONS_00015908-exon-sc0000222-1491911889:342793..344342Clytia hemisphaericaexon
TCONS_00015908-exon-sc0000222-1510915933:342793..344342TCONS_00015908-exon-sc0000222-1510915933:342793..344342Clytia hemisphaericaexon
TCONS_00015908-exon-sc0000222-1575043694:342793..344342TCONS_00015908-exon-sc0000222-1575043694:342793..344342Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000222supercontigsc0000222:337240..344342 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.0185	0.421837	0.0840873	0	0.855391	0	0	0.459706	0.632041	0.372909	0.571102	0.713644	0.228111	0.412016	1.0478	2.11407	0.49587	1.75579	0.22556	0.303881	0.86819	1.23789e-05	0.988975	0.403004	1.95438	3.59503	0.327127	0	0	0.609155
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015908 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top