TCONS_00015897 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015897
Unique NameTCONS_00015897
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length661

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015897 ID=TCONS_00015897|Name=TCONS_00015897|organism=Clytia hemisphaerica|type=transcript|length=661bp
CTGATGGTAGTATTGCAAGTGTTTGTAGGAGTCTCTCTGGTCTCTCTCCT
CTCACATCCTCTTTGAAGCCAAATAGTTAATATATACTCGTATTTCATTG
TTGAGGttaatttattttgtttctaTTTAGATTTTTAATCAAATATGCCT
TATCAGCCACCCCCAATGCAAAGTGGACCATCATGTTTTGATCGCATGAA
AATGGGCTTCATGATCGGATTTGCTGTTGGAATCAGCTCTGCTGGATTAT
TTGGTACATACTCTGCTCTAAGAATGGGTTTGAGAGGAAGAGAATTGATG
TCAAATGTAGGCAAAGTTATGATTCAAGGAGGAGGAACTTTTGGGACATT
CATGTGTATTGGAACTGCCATTCGATGCTGATAAAACAAttagaatttat
tatttttttgttgtacataataagcaaattttttagaaaaagaaaatcaa
ttacTAGCACATGAAAGAAACTGTTCTATTTTTTAATGAGTTTATTATAG
ACTTTTTGCTAGGGGTTTGCTAGTTAGGATGTGTCAtgttaaataattaa
aaactctagcCACAAAAcaacccggggggggtactagggttgcgagctga
cggggagggggttgtacttttacggtgtgacgggattggcccttttttag
tacggtattac
Run BLAST on NCBI

transcript from alignment at sc0000222:160881..168768+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015897 ID=TCONS_00015897|Name=TCONS_00015897|organism=Clytia hemisphaerica|type=transcript|length=7888bp|location=Sequence derived from alignment at sc0000222:160881..168768+ (Clytia hemisphaerica)
CTGATGGTAGTATTGCAAGTGTTTGTAGGAGTCTCTCTGGTCTCTCTCCT
CTCACATCCTCTTTGAAGCCAAATAGTTAATATATACTCGTATTTCATTG
TTGAGGttaatttattttgtttctaTTTAGATTTTTAATCAAATATGCCT
TATCAGCCACCCCCAATGCAAAGTGGACCATCATGTTTTGATCGCATGAA
AATGGGCTTCATGATCGGATTTGCTGTTGGAATCAGCTCTGCTGGATTAT
TTGGTACATACTCTGCTCTAAGGTAAacatattattttttatctatagCT
AAGGAGGGCAAATTGTAATAGTGGTTGGAAGAGCTTGTTGCCTCTCCTGC
CACACCACGTCTAACAGTCAGGGACAGTCGCCTTATTTATAGGAGACCAG
GCGTACCCAATCGATAACATCGATTGTCGATTTAATCGATGTCAATCGAT
AAAAGTCGTTCGTAATCGATGATCGATCGATTAATAATCGATGGCCAATC
GATAGGaacgtaaaattttattatcgaTTGGtatcgattattatcgatta
gccatcgattgaattcgattgttatcgattaAGATCGATTGTGATCGATT
GAGCTAATTTTCTGTATTTATGATCGCTACTctgtgtaccagagtgtatc
tcacgatgaTATCGTAGCgtactttaagggaagaaattttcgcgggaaga
acttttcacggaatttaatttcgcggtttttcggcaAATCGGGTGAATTG
CCTTCGCACCAAATTTCTGAGCAATCCGAACAACAAAACCAACGACGCAA
GTTTTTTTGTCCTTGCGGTAccgtggtttttctaatttaacgcgtaGTCT
AATTTAACACGTACCCTGCTTTTGGCGAAAAATCGTAATTAATCTTACCA
TAggacggggtgaatcggataNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNTCCCGTTGTTTACGGACATTTTAAAT
GAACACTGTTTTGACGTTTAGCGTCCAttgaatacccctgtctcaagtaT
CATTCGACCGCTACAAATGCCCCGCGNACGTTTTGCCGAAGTTATAATTT
GAATTCATGCAATTCTCACAAAGTAATTAGTCATTAGATGgagcgtcata
aaaatgtaatacCTAAGGGGGATATATTTGGGTAGTACATTTAGTATCat
tgataataaaattttgattagtGTGCGCTATGAAAAGTGTTGGTTGAATG
CACGATAGAAAGTGCAATGTAAGAAAATTAAACCCGAAATGAAACGTCTN
AAAAGAATAGAGAAATTAATCCGATCatcgtatatttttgttttctcctt
aTTTCAGGTACTGAACAATCTCAGATACTTCAGAGACGGGAGAAGATTAT
CAATAACACTCTGGTTGGCTCTAAAATTTGTTGACAAAATGATAAGAGAA
AACGTAcgatacacccctgtttcagtgacccGGTCAAGGATCCGCCCcga
tgaaaaaaatacaaaaagttacCTAATACTGACACGTTCACTGCCAAGCC
ACTTTAAGAATTTTGACCTCATTGAATTTcatcgaaagtttgactttcaa
aGGTCCAGCCGCCTTGGTTCTGCTTTAAGTGCCTACAAATTGCCTACCGA
TCGACGCAGAATTTGAGGACGATTCCAGAAATGCAAAAACGaagcaaaaa
aaagtattttctttaaagGTTATGGCCCTTTAGAGTACTGTCGGTATTTC
GACACCTATACTACAACTAGGTCNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNAAATATCTGGGGCATATTTTCTCACCGGGCCGATTATTTATTGCC
AATTGTTCCACTAGGAAGGGGCTCCACCGTGTCATACTTTCTTGCCTCTT
TTAGCTTACCAATTTCCGCTTGCAGAAATAtttgcacccctgtctcagag
aTGATTTTAGCCAGGGGATGCGAGACCTCCGAGAGAATGAACAGCATATG
AACGAACGGGAAATTATGTCTTGTCTCGTACTGTACCCTTATCTTGTTGT
AAAGTGTTTGTAGCCTTACCCTTCCCACTATTTTCTTCTGGAAAATAATA
CATAACATATAAACTCCTAAATTATCACCatacaaaatatacaaagacAT
TGTATTCACATGAACAATGAGTGACTATTAACATTTGAACATTTATTCCT
AGCTACTCTGAACACTTAACAAGCCTCTTGGGATAGTGTGGCagtaatta
aaaatgacatgatgacggcatttgatatttttaattattcaataatTAAC
TCCTTTCCATTTCTCGGTTACGTATCAATTAACAACGCCTTCAACTTGGG
GCGCAAATGGGCGATTCGCGTTTTAACGCGACTTTAGAATGAAAATACGA
AGAATAGACATTGTTTTTCGTTTAGTGAACCAAAGATTGTGTATACAACT
GGCTTTCGTAGAACATAATGCCAAAGGACTCTCCAATCACGGTCGCTTCA
TTATTTCTTATTCGGCATTTCAAAAAAGGGTCCGAAAATCAGaaggtttt
cttcttcaatttccgaAGAACATGCTCCAAATCTTCGAAGCCATATTTTT
CCGATAGCTTGATCAATCAGTGATCGGGATCTGAAAACAAAATGGAAAAA
GACATCGTCAGTGAAGTATGAGAGGCGATTAAACAAattatccgattcac
cccgggtatccgattcaccccgtcNNNNNNNNNNNNNNNNNNNNNNNNNN
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aaatttacttctgaaaaccctaaaataaggtaaatataggctaaaatcag
gttgtttagagcaaaataagtttactttgaaagctgaaaatgttattaaa
aattaataaaaagggGGTCCTTCAGgtctggggggggggttgggaGGGTT
GGAAtactttcgaaaaattaacaagcgggggatccgtttatttggaaccc
aAGATTAGTTGGGCTGCAtttgttacacgcttttttttataagaatggtg
taaatccatttcatcatggatattcctaacttttttgggaaaatcatcct
taaatattcttacagcatattcttaggttagggtcttaattcagactaga
tttaacatttagtacctACGTCTCAACAGgtctcaaaattccatgatggt
gatattcttagcatattcttaattttttggccattttcatcatggacatt
cttattaagtgtattcttataaaagaaaagtgtGTATTTTTACTCATTCT
GTCAACAAGATTTctgcttaaaattttcttaaaacttTCTTTGTTACAGA
ATGGGTTTGAGAGGAAGAGAATTGATGTCAAATGTAGGCAAAGTTATGAT
TCAAGGAGGAGGAACTTTTGGGACATTCATGTGTATTGGAACTGCCATTC
GATGCTGATAAAACAAttagaatttattatttttttgttgtacataataa
gcaaattttttagaaaaagaaaatcaattacTAGCACATGAAAGAAACTG
TTCTATTTTTTAATGAGTTTATTATAGACTTTTTGCTAGGGGTTTGCTAG
TTAGGATGTGTCAtgttaaataattaaaaactctagcCACAAAAcaaccc
ggggggggtactagggttgcgagctgacggggagggggttgtacttttac
ggtgtgacgggattggcccttttttagtacggtattac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008880XLOC_008880Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015897-exon-sc0000222-1491911889:160881..161152TCONS_00015897-exon-sc0000222-1491911889:160881..161152Clytia hemisphaericaexon
TCONS_00015897-exon-sc0000222-1510915933:160881..161152TCONS_00015897-exon-sc0000222-1510915933:160881..161152Clytia hemisphaericaexon
TCONS_00015897-exon-sc0000222-1575043694:160881..161152TCONS_00015897-exon-sc0000222-1575043694:160881..161152Clytia hemisphaericaexon
TCONS_00015897-exon-sc0000222-1491911889:168380..168768TCONS_00015897-exon-sc0000222-1491911889:168380..168768Clytia hemisphaericaexon
TCONS_00015897-exon-sc0000222-1510915933:168380..168768TCONS_00015897-exon-sc0000222-1510915933:168380..168768Clytia hemisphaericaexon
TCONS_00015897-exon-sc0000222-1575043694:168380..168768TCONS_00015897-exon-sc0000222-1575043694:168380..168768Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000222supercontigsc0000222:160881..168768 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
188.266	185.337	243.228	298.7	43.1293	35.8234	40.7178	52.217	59.33	49.2038	46.9239	50.7149	47.5398	56.7187	58.223	66.7183	91.1014	70.05	18.933	17.367	54.0591	52.3377	88.4755	70.7136	31.7135	32.0164	47.1704	31.0745	61.278	50.9208
Blast
[Close]
BLAST of TCONS_00015897 vs. Swiss-Prot (Human)
Match: ROMO1 (Reactive oxygen species modulator 1 OS=Homo sapiens GN=ROMO1 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.786e-25
Identity = 48/73 (65.75%), Postives = 59/73 (80.82%), Query Frame = 1 
Query:  160 PPMQSGPSCFDRMKMGFMIGFAVGISSAGLFGTYSALRMGLRGRELMSNVGKVMIQGGGTFGTFMCIGTAIRC 378
            P  QS PSCFDR+KMGF++G AVG+++  LFGT+S LR+G+RGRELM  +GK M+Q GGTFGTFM IG  IRC
Sbjct:    7 PYGQSQPSCFDRVKMGFVMGCAVGMAAGALFGTFSCLRIGMRGRELMGGIGKTMMQSGGTFGTFMAIGMGIRC 79
The following BLAST results are available for this feature:
BLAST of TCONS_00015897 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ROMO11.786e-2565.75Reactive oxygen species modulator 1 OS=Homo sapien... [more]
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