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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015894 ID=TCONS_00015894|Name=TCONS_00015894|organism=Clytia hemisphaerica|type=transcript|length=4099bpRun BLAST on NCBI protein sequence of TCONS_00015894-protein >TCONS_00015894-protein ID=TCONS_00015894-protein|Name=TCONS_00015894-protein|organism=Clytia hemisphaerica|type=polypeptide|length=421bp MEVPGELGWRFSGDKSLEIGRSPVNFVQSRIDKYNSKIFSARIMNQPHIFRun BLAST on NCBI transcript from alignment at sc0000222:46100..70919+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00015894 ID=TCONS_00015894|Name=TCONS_00015894|organism=Clytia hemisphaerica|type=transcript|length=24820bp|location=Sequence derived from alignment at sc0000222:46100..70919+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000222:46100..70919+ >TCONS_00015894 ID=TCONS_00015894|Name=TCONS_00015894|organism=Clytia hemisphaerica|type=CDS|length=15192bp|location=Sequence derived from alignment at sc0000222:46100..70919+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00015894 vs. Swiss-Prot (Human)
Match: CP26B (Cytochrome P450 26B1 OS=Homo sapiens GN=CYP26B1 PE=1 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 1.429e-18 Identity = 103/438 (23.52%), Postives = 179/438 (40.87%), Query Frame = 3
Query: 171 NFVQSRIDKYNSKIFSARIMNQPHIFVTSNQGIKEILVDKSSSFEMSYKDFGYMYSLYGEVCIFNN-GDEAFRLREIIRTLFHTENCNHYMIKIQRLTQQFLKDLD-QSNSIEVYETFKKLTTAICLSVFLDI----DDL-ELLEKYKSVATTHWHGLVSVPLSVKIKGWSSSFGKAMEAKEELLSLIKSQLQNKQNIGRFLEAL--------QQAEFESIEEAASHVLLFV---------------------SALIPKALSSLLTSTVIETQGESKE-QLRNLAWTDSRILNDILLEASRLYPPFYGGRRIANENVNIDGYLIPEGHQVIYITRFGNRDKEAFDNADQFLPERWQGV---DINKRDLVWTFGGGKRVCVGTEFINRILKHVMSFLLSEYKWEIEGDV-PLYKMLPVSRPKQTVHVKFTRNSINHDEV 1361
F SR +KY + +F ++ +P I VT + +++IL+ + + M L G + N+ GD R++ +F E Y+ KIQ + Q L+ +I VY+ +KLT + + V L +DL L E Y+ + S+P+ + G+ ++ L I+ +LQ Q +L+AL + + +++E L + ++ K L ++ + G E LR + R L+ ++ E RL+ P GG R + +DG+ IP+G V+Y R + F + + F P+R+ D + R FGGG R C+G LK + L S ++E+ P ++PV P + VKF N +E+
Sbjct: 71 GFQSSRREKYGN-VFKTHLLGRPLIRVTGAENVRKILMGEHHLVSTEWPRSTRM--LLGPNTVSNSIGDIHRNKRKVFSKIFSHEALESYLPKIQLVIQDTLRAWSSHPEAINVYQEAQKLTFRMAIRVLLGFSIPEEDLGHLFEVYQQFVDN----VFSLPVDLPFSGYRRGIQARQILQKGLEKAIREKLQCTQG-KDYLDALDLLIESSKEHGKEMTMQELKDGTLELIFAAYATTASASTSLIMQLLKHPTVLEKLRDELRAHGILHSGGCPCEGTLRLDTLSGLRYLDCVIKEVMRLFTPISGGYRTVLQTFELDGFQIPKGWSVMYSIRDTHDTAPVFKDVNVFDPDRFSQARSEDKDGRFHYLPFGGGVRTCLGKHLAKLFLKVLAVELASTSRFELATRTFPRITLVPVLHPVDGLSVKFFGLDSNQNEI 500 The following BLAST results are available for this feature:
BLAST of TCONS_00015894 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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