|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015890 ID=TCONS_00015890|Name=TCONS_00015890|organism=Clytia hemisphaerica|type=transcript|length=1305bpRun BLAST on NCBI protein sequence of TCONS_00015890-protein >TCONS_00015890-protein ID=TCONS_00015890-protein|Name=TCONS_00015890-protein|organism=Clytia hemisphaerica|type=polypeptide|length=421bp LAIPRHNFSAYNIIKNNTNRMSNYSPEDVLIYGAYRTPIGDLNGSLATLKRun BLAST on NCBI transcript from alignment at sc0000222:9589..30509+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00015890 ID=TCONS_00015890|Name=TCONS_00015890|organism=Clytia hemisphaerica|type=transcript|length=20921bp|location=Sequence derived from alignment at sc0000222:9589..30509+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000222:9589..30509+ >TCONS_00015890 ID=TCONS_00015890|Name=TCONS_00015890|organism=Clytia hemisphaerica|type=CDS|length=10128bp|location=Sequence derived from alignment at sc0000222:9589..30509+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00015890 vs. Swiss-Prot (Human)
Match: THIC (Acetyl-CoA acetyltransferase, cytosolic OS=Homo sapiens GN=ACAT2 PE=1 SV=2) HSP 1 Score: 422.55 bits (1085), Expect = 9.654e-145 Identity = 222/397 (55.92%), Postives = 287/397 (72.29%), Query Frame = 1
Query: 67 NYSPEDVLIYGAYRTPIGDLNGSLATLKAHELGSVVIHKLLETTGLPAENVSEVILGQVFTAGQGMNPARQAAVKAGIPYSVPAHTLSFVCGSGLKAVANAYQSIKCGDNNVVIAGGQESMTNAPHCVGMRSGVKFGNGTLTDIMLNDGLTDAFHGYLMGITAENVAKQWNISREEQDKFAANSQQKIGQSLTQNAFAGEIVPVEVKQRRETITVTEDQSPKVNTTAETLSKLRPAFIKDGSGTVTAGNSSTINDGAACVLLSTLEEAQRLNVKEEPLARIVSWAQVGIDPSIMXXXXXXXXXXXXXXXXWTLDEVDLFELNEAFASQSIAVVKELNVSMEKVNVCGGSIGLGHPIGCSGCRILVTLLHAMKRMNKRKGVAALCIGGGMGIALCVER 1257
N + V+I A RT IG NG+LA + +LGS VI ++L+ + E+VSEVI G V AG G NP RQA+V AGIPYSVPA + +CGSGLKAV A QSI GD+++V+AGG E+M+ APH +R+GVK G LTD +L DGLTDAFH MGITAENVAK+W +SRE+QDK A SQ + + F EIVPV V R+ I V D+ P+ + E +SKL+P F+ DG+GTVT N+S INDGAA V+L EA + + PLARIVSW+QVG++PSIMG+ P+ A+++AV KAGW+L++VD+FE+NEAFA+ S A+VKEL ++ EKVN+ GG+I LGHP+G SGCRILVTLLH ++RM + +GVAALCIGGGMGIA+CV+R
Sbjct: 2 NAGSDPVVIVSAARTIIGSFNGALAAVPVQDLGSTVIKEVLKRATVAPEDVSEVIFGHVLAAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAVQSIGIGDSSIVVAGGMENMSKAPHLAYLRTGVKIGEMPLTDSILCDGLTDAFHNCHMGITAENVAKKWQVSREDQDKVAVLSQNRTENAQKAGHFDKEIVPVLVSTRKGLIEVKTDEFPRHGSNIEAMSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEADKRGLT--PLARIVSWSQVGVEPSIMGIGPIPAIKQAVTKAGWSLEDVDIFEINEAFAAVSAAIVKELGLNPEKVNIEGGAIALGHPLGASGCRILVTLLHTLERMGRSRGVAALCIGGGMGIAMCVQR 396 The following BLAST results are available for this feature:
BLAST of TCONS_00015890 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.