TCONS_00015882 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015882
Unique NameTCONS_00015882
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length261

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015882 ID=TCONS_00015882|Name=TCONS_00015882|organism=Clytia hemisphaerica|type=transcript|length=261bp
tcattaaataattataaagacaaaaagacaatattctaataaaagagcgt
cccacttgaacgtcccactaccgtcccactcaTGCTGAGGGGAAAGCCCT
GTATTACaattagaatgttttcttttcattcgaATTCAAAATCGTGTTTC
TGGGGAAAACCCTCTGATTCGAATGATTACTTTGTTATTCTCAATAAATA
TAAACTCTTCGAAATATAGTCAGGCTGCTGCTGGACCACTTTTGTAAAAA
CCTTAGTGTGN
Run BLAST on NCBI

transcript from alignment at sc0000217:277567..277827

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015882 ID=TCONS_00015882|Name=TCONS_00015882|organism=Clytia hemisphaerica|type=transcript|length=261bp|location=Sequence derived from alignment at sc0000217:277567..277827 (Clytia hemisphaerica)
NCACACTAAGGTTTTTACAAAAGTGGTCCAGCAGCAGCCTGACTATATTT
CGAAGAGTTTATATTTATTGAGAATAACAAAGTAATCATTCGAATCAGAG
GGTTTTCCCCAGAAACACGATTTTGAATtcgaatgaaaagaaaacattct
aattGTAATACAGGGCTTTCCCCTCAGCAtgagtgggacggtagtgggac
gttcaagtgggacgctcttttattagaatattgtctttttgtctttataa
ttatttaatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008872XLOC_008872Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015882-exon-sc0000217-1491911889:277567..277827TCONS_00015882-exon-sc0000217-1491911889:277567..277827Clytia hemisphaericaexon
TCONS_00015882-exon-sc0000217-1510915933:277567..277827TCONS_00015882-exon-sc0000217-1510915933:277567..277827Clytia hemisphaericaexon
TCONS_00015882-exon-sc0000217-1575043694:277567..277827TCONS_00015882-exon-sc0000217-1575043694:277567..277827Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000217supercontigsc0000217:277567..277827 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.89171	1.21088	3.30217	6.10415	2.55779	9.76368	11.5336	1.94544	2.02486	0	1.42245	2.58034	1.22509	1.22709	2.87422	2.99085	2.59554	4.90651	4.39881	4.47875	2.42221	0	3.53973	2.47274	3.55635	6.4271	3.4101	3.96365	2.29733
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015882 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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