TCONS_00015870 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015870
Unique NameTCONS_00015870
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2534

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015870 ID=TCONS_00015870|Name=TCONS_00015870|organism=Clytia hemisphaerica|type=transcript|length=2534bp
NAACCAAGGTCTTCATACTCAATCATCAAATCCATTACTTATGAACAGTT
CATATAAttttcaacaacaacagcaagGACAAGGCAAgaataagaagaaa
aagaaaaatcaagcaAGATTTCAACCCTATGAAAGACAACTTGTCAATCA
GACTGTAGGCATCCAATCACTTGTACAAAGCTCTCCTGTCTTCATCAATC
ACAGCAGCAACAACAAAAGTCAAGAAGTTCTAGATTTGTTGAAGCAGTTC
CCACGATCCTTATCAACCAAGGAAATTGAGAAGAATTTTTATCGTGTGTC
AAAACAGCAACTGCAAACAACACTGGATCAACTCTGTGCTGGAGGTTTAG
TGTTGAAACAACCTGGTTTTGGCCTCGAAGCATGGAAAATCAATCCGAAC
TCTCCGACAGGTACACCGTCATCACTGCCAACGCAGCCAACACTTGCATC
GAATCCACTTCTCCAGAAGACGTTCAATCCAGCGCAATCTCCTCCTATTG
CTCAAAATACACCTTTAACCAAAAAACAACGGAAGCAACTCAACAAAATG
AACGcacaatcaacaccaaatttgaCTGTCACTCTTGACAACAGCTTTGG
AGGTTCTCGATCCATATCCACGCCACCTTTAACCaaaaaacaacgaaaac
aaCTGAACAAACATCAATCACAATCTGCTTCAAACATGATGTCTTCGCCA
GTAATAACAGCAAATGCAAGCTTTGGATCTCCATACAACACTCCTCTAAC
GAAGAAACAGAAAAAACAGCTCAACACGCCCCTTATAACTCCACCGAAAA
CTGATTTCATGGTTTCTGCAGATATCTTTAACGCTTTGAACAAGAATCCA
GTATCAGCGCTGAACGAGTTATGCCAAAAGAACGGGCGAACTGTTTCATT
TGATTTGGTTGCGGAGAATCGGTTCAATCAGAAGAACAAATTTACGGTTG
CAGCAAACGTTAGCGGTAGGATGTATGATGCAGTGACAGCCTCAAATATG
AAAGATGCACGACGAGAGGCCGCAGATGTCGCATTGAAGGTCATTTTAAA
GGACTGCGTTCAGACGCAATCGCAGCAATCTGTTCAAAACGTTCTCTCTC
CGAACGCGACACATTTCGATAAGATGGCTGCTTTGAGCCACCGTACCTTC
ATCGAAAAATCTAATATGGTTCAAGAGAAATTTGCTGGTCGCAAAGTCAT
TGCTTGTATGATTATGAAGCGCGCGGAGAGTGACGAAGGAGTAGTCGTTG
CTCTTGGTGCAGGTAATCGATGTATAACGGGACAGCGGCTAAGCATGGAA
GGAAAAGTAGTTAACGACTCGCACGCGGAAATCGTTTGTCGCCGTGCGTT
CATTTCGTACTTATATAAGGAGCTAGAGAATCATATTGCAGGTAAGCAAT
CGATATTTCAAAACGGTGGCTCAAACGGAAAATTCAGTGTCAAAGAAGGT
GTTTCGTTTCATTTGTATATCAGTACTGCGCCTTGTGGAGATGGTGCCTT
GTTTACACCGAGACAAGATGAGAAAATATCGGATTTCCCTAAAAAACATT
CGCCCGTTTTTTCGTCTAAAGTACACGGAATAACCCGATCGAAGATTGAA
AATGGGGAAGGGACAATCCCGATTGAGAAAGAAGAAGCAGTACAGACTTT
TGATGGAATACTTCGGGGACAGCGTTTACGTACGATGTCTTGTAGTGATA
AAATATGCCGTTGGAATGTGGTCGGTGTGCAGGGAGCGTTATTGAGTCAT
TTTATGGATCCTGTCTATTTGGGCTCGCTTACACTAGGTTATCTTTATGA
TCACGGGCATTTATGTAGAGCTATTTGTTGCAGGTTAGATAAGAACAGCA
CTGGAGATTTCGAAGGAAAACTAGCTGAGCCGTTCCGTTTAAACCACCCT
TGGATTGGGCGTGTCACCCAATATGAAGCTGGGCGGGAGACGGAGAAAAC
GAATAACATTAGTATAAATTGGAGTTTCTATGATACGACACCTGAAGTCA
CAGACGGCCGGACCGGTGCTCAAATGAGCCGTACCGGCGGAATTCCAACG
CCTTCTCGGCTTTGTAAATATGAAATGTTAAATCGGTTTCGTTCATTGAT
CGGGAAGACGAATGAACACAAACATTTGAGGGAAGATCAAAGTTATCGCG
AGTTGAAAGACAGTGCGTTAgaatttcaaaacacaaaacaacTCATGATG
GAAACGTTACGAACAATGAATTATGGACCGTGGGTTAAGAAACCAAGGGA
GCAGGACATGTTCTGATTTTGAATATACATAAGAGCTTTCTTCATGGAAA
TCTTTTCATCCGAAAAAtgattactttaatcgtagaaattttagcgagac
taattttagcgttctagcgagttttccctattttcgctaaaataaatctc
gctaaaacacgccgaatcgacagatcgctaaaatttatccgtgCGAAATG
TCTGGTTATattgggttggtgtaatttaagatgcacgatctaacgattta
cgattcacgatgcgcgatccatgcataaagtatg
Run BLAST on NCBI

protein sequence of TCONS_00015870-protein

>TCONS_00015870-protein ID=TCONS_00015870-protein|Name=TCONS_00015870-protein|organism=Clytia hemisphaerica|type=polypeptide|length=754bp
NQGLHTQSSNPLLMNSSYNFQQQQQGQGKNKKKKKNQARFQPYERQLVNQ
TVGIQSLVQSSPVFINHSSNNKSQEVLDLLKQFPRSLSTKEIEKNFYRVS
KQQLQTTLDQLCAGGLVLKQPGFGLEAWKINPNSPTGTPSSLPTQPTLAS
NPLLQKTFNPAQSPPIAQNTPLTKKQRKQLNKMNAQSTPNLTVTLDNSFG
GSRSISTPPLTKKQRKQLNKHQSQSASNMMSSPVITANASFGSPYNTPLT
KKQKKQLNTPLITPPKTDFMVSADIFNALNKNPVSALNELCQKNGRTVSF
DLVAENRFNQKNKFTVAANVSGRMYDAVTASNMKDARREAADVALKVILK
DCVQTQSQQSVQNVLSPNATHFDKMAALSHRTFIEKSNMVQEKFAGRKVI
ACMIMKRAESDEGVVVALGAGNRCITGQRLSMEGKVVNDSHAEIVCRRAF
ISYLYKELENHIAGKQSIFQNGGSNGKFSVKEGVSFHLYISTAPCGDGAL
FTPRQDEKISDFPKKHSPVFSSKVHGITRSKIENGEGTIPIEKEEAVQTF
DGILRGQRLRTMSCSDKICRWNVVGVQGALLSHFMDPVYLGSLTLGYLYD
HGHLCRAICCRLDKNSTGDFEGKLAEPFRLNHPWIGRVTQYEAGRETEKT
NNISINWSFYDTTPEVTDGRTGAQMSRTGGIPTPSRLCKYEMLNRFRSLI
GKTNEHKHLREDQSYRELKDSALEFQNTKQLMMETLRTMNYGPWVKKPRE
QDMF
Run BLAST on NCBI

transcript from alignment at sc0000217:417915..424128-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015870 ID=TCONS_00015870|Name=TCONS_00015870|organism=Clytia hemisphaerica|type=transcript|length=6214bp|location=Sequence derived from alignment at sc0000217:417915..424128- (Clytia hemisphaerica)
NAACCAAGGTCTTCATACTCAATCATCAAATCCATTACTTATGAACAGTT CATATAATTTTCAACAACAACAGCAAGGACAAGGCAAGAATAAGAAGAAA AAGAAAAATCAAGCAAGATTTCAACCCTATGAAAGACAACTTGTCAATCA GACTGTAGGCAGTAAGTTCAATTGTTTTTATATTTGCTAACAATCTCCTT AGAGATATTCTTCTCTGATATAAAGCCTGTCAATGCACGCATTTTTTTGT AAGAATAGTGTACTTTGGATGAGGGTCAAGTATTCTTAAGAAAGTGCCAA AATTGAGGGTGAAATATTCTTAACGTATTCTTACTTTTTTAGACTTAAGA CTTTTTTACAAACATGAGAAATATCAATTTGAGAGTTTTGCACTTTTGAG TGAACATTTGGGCTAAAATTACATTTCTTCCTCAAAGCTTCAATTTATCT CTAACAAAGGAAGCAGTTTTTTCTGTTAACCAAATACAAAATGACTGTAT TCTTATCAAATTCTGTTTCTGAATCACTCGTGTGGAAATAATAATTATAT AGCACAATTATTGAAGAAGTTGATTTTCTTCTTCTATATTTTTCATCTTC CTTTTTTGGACCTACCTCCGGGTACCCCGGTGGAGGTCCTTTAAATTAAC CCATGTCCGTCCGTCCGTCCGTTCGTTCGTCTGTTGCCAGGTTTTCTCAG GATTGGCTCATTAGTTTTTTTTGATTTTTGGCACACTGATGCAAAATGAT AATACCTAAAATGTGATGGAGCCCGATTTTGGAAAAAAAATTTTCCGGCT GAAAATGCCGGAAATATGCCGGAAAAACAGGTTTTTTTGGCATTTTCTCG AGATTTTATCATCAGTTTTTTTCTGATTTTTTGCTCAAAGATGCGTATTA ACAATGCCCAAAACATGGCCGAGTCCGATTTTTGAGAAAAATTTTTTTCC GGCCGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNAACATGGCCGAGTCCGATTTGTGATAAAA CATTTTTTCAGGCCGAAAATGCCGGAAATATGCCGAAAAAACTGTTTTTT TGGGATTTTCTCAAGATTTTATCACTAGTTTTTGCTGATTTTTTGCTCAA AGATGCGTATTAACATTGCCCAAATCATTGCCGAGTCCGATTTTTGAGAA AAAGATTTTTCCGGCCGAAAATGCCGGAAATATGCCGGAAATCCCCGTTT TTGCAGATTTGAATTGGGCTTTTTCCATACATTACTTTTTACTAAACCCC TCCCCCCATCAACAATCAATGATGACATTTAATGCATTTTCGCTAAGCGC TATATTTTCTTAATGATTTTTTTTCTCCTTATTGCTATCTAAGTTTCATC ATCAGGTAGGTCCATTCAGCATGTTGCTTGTTTTTTTTTTTTTTAATAAT ATCCCACTCCGGATTATCTTTTTAACAAACACAAAACCGTTATCTAATTC GAATTCGATCAAAAGTTACAGCCATTTTTGTCTCCGCTGCAAATTATATT GAGACAGACTCTAGAAAGAAAGGAGCACGCAGAAATAACAAAAGAATTTC TTGAAATTTGTGGTTACGCAAGGGGAGGAAGGAGAAATTTGTTTTTTCTT TTGTTGAAAAAAATGCTGTGTAAGCTGATGGTAGGGTAGATACGTTGTAT GATGTCCTTTTTTAAGCAAAAGTAGAGTGAAGTGTTACTTGAGTTTTCAC TCAATATCTTTCATCATAAATTTTGAATTTGAAGATGAAGAGCTCTTAGA ATTCTGCGGAAAAAGCTATAATGCCTAACTGTACCTAGTACACTGTTTTA TTATGGGCTCAGCACGTTTTAAAATATATATTTTCGATTTTAGTCCAATC ACTTGTACAAAGCTCTCCTGTCTTCATCAATCACAGCAGCAACAACAAAA GTCAAGAAGTTCTAGATTTGTTGAAGCAGTTCCCACGATCCTTATCAACC AAGGAAATTGAGAAGAATTTTTATCGTGTGTCAAAACAGCAACTGCAAAC AACACTGGATCAACTCTGTGCTGGAGGTGAGTAACCATATTGATGAGATG AATTGAATTAGGCAGGGACTAGGCACTACTTTGCTGAACGAGATTTAATG TCCTTTGTTTAAAAAAATCAGAAAATTGCACTTGCTTTAATAAGCACAAC ACTCTCTTCAGCCTAGATATGCTCAAGATTTTGGGAAAACTCTAGGCTAA ACGTCATGCTATNTTCATCTTCGTTTTTTTTTCTTTTTTAATAGTATTCC ACTCCGGATTATCTTTTTAACAAACACAAAACCGTTATCTAATTCGAATT CTATCAAAAGTTACAGCCATTTGTGTCTCCGCTGCAAATGAGACAGACTC TAGAAAGAAAGGAGCACGCAGAAATAACAAAAGAATTTCTTGAAATTTGT GGTCACGCAAGGGGAGGAAGGAGAAATTTGTTTTTTCTTTTGTTGAAAAA ATGCTGTGTAAGCTGATGATACGTTGTATGATGTCATTTTTTAATCAAAA GTAGAGTGAAATGTTACTTCAGTTTTCACTCAATATCTTTCATCATAAAT TTTGAATTTGAAGATGAAGAGCTCTTAGAATTCTGCGGAAAAAGCTATAA TGCCTAACTGTGCCTAGTACACTGTTATATTATGGGCTCAGCACGTTTTA AAATATATATTTTCGATTTTAGTCCAATCACTTGTACAAAGCTTCCCTGT CTTCATAAACCACAGCAGCAACAACAAAAGTCAAGAAGTTCTAGATTTGT TGAAGCAGTTTCCACGATCCTTATCAACCAAGGAAATTGAGAAGAATTTT TATCGTGTGTCAAAACAGCAACTGCAAACAACACTGGATCAACTCTGTGC TGGAGGTTAGTGTAACCATATTGATGAGATGTTGAATTAGGCAGGGACTA GGCACTACTTTGCTGAACGAGATTTAATGTCGTTTGTTGTTAAAAATCAG AAAATTGCACTTGCTTTAATAAGCACAACACATTCTTCAGCCTAGATATG CTCAAGATTTTGGGAAAACTCTAGGCTAAAGGTCATGCTAAACCTAAATT TTGAAATATTTGGCCTCCAAATCACAAAAGAATATGCTGGAGTTTTTACA AGCTCTTATTTGATTTGGTTGGTCGTTAAGATGTAATAAAAGAATCTTAT TACTTTTTCTAAAGAACGCGTCATCCCTATCACTTCAAATGACCAATTAG TGAAGTATCTTGTAAAAACTCCAGCTCATCCCAATTCCTCCTATTCCTAA AGTTTTTTTGCGAAGCATAACAAGGATCTCAAAAATTTGCCCCGTGTTGA AAAACGTGTATTTGCATCTCAGGGTCATTATTCAACCATTCAATTCAAAA TTAGATTCCGTCAAGTGAATTAATTAAAAATCGAGCTGAGGCAGTGCAAC TTAGGAATTCGATCATATTCATTCAGTATAAGACTTCATCCATAAGTCTC GACCTATCTTTTTAGGTTTAGTGTTGAAACAACCTGGTTTTGGCCTCGAA GCATGGAAAATCAATCCGAACTCTCCGACAGGTACACCGTCATCACTGCC AACGCAGCCAACACTTGCATCGAATCCACTTCTCCAGAAGACGTTCAATC CAGCGCAATCTCCTCCTATTGCTCAAAATACACCTTTAACCAAAAAACAA CGGAAGCAACTCAACAAAATGAACGCACAATCAACACCAAATTTGACTGT CACTCTTGACAACAGCTTTGGAGGTTCTCGATCCATATCCACGCCACCTT TAACCAAAAAACAACGAAAACAACTGAACAAACATCAATCACAATCTGCT TCAAACATGATGTCTTCGCCAGTAATAACAGCAAATGCAAGCTTTGGATC TCCATACAACACTCCTCTAACGAAGAAACAGAAAAAACAGCTCAACACGC CCCTTATAACTCCACCGAAAACTGATTTCATGGTTTCTGCAGATATCTTT AACGCTTTGAACAAGAATCCAGTATCAGCGCTGAACGAGTTATGCCAAAA GAACGGGCGAACTGTTTCATTTGATTTGGTTGCGGAGAATCGGTTCAATC AGAAGAACAAATTTACGGTTGCAGCAAACGTTAGCGGTAGGATGTATGAT GCAGTGACAGCCTCAAATATGAAAGATGCACGACGAGAGGCCGCAGATGT CGCATTGAAGGTACATTTATCTCCACTTATTAACATTGTTAATATTATTA GTTTTATATTACCAGCAGGGAGAGGGGTTTAAGCCACCTTTCTTAACTTT TGATCTGGATGAGCTTTATGTACCAAATTTGACACAGATGTTCCCTTCGG TAGTATGAACTCATGAAACTCGGTGTCGTCATCGAAAAGGGGATGAACGG CAAGATAAATTGGTTCATTTTGCCAAAAAATTAGGGGTTATTTTAGAAAA TCATGAAAAACGTTGAATTTCATTTCGACAAAGCCTTCTTCAATATTGCT GTGAACTAATTTTGGCAAAACTGCCCTCTCGCCGTTTGTCGATTTTCGTG ATTTACTGTGCTATGCCTTTTTAAGAAACGTATGTAACAGTAAAACATTG ACATATCGAAATAAATTTATTTGGGAAAGAAATTGACACTAAAATTTGCA TCGACTTATCTATTTTTAGGTCATTTTAAAGGACTGCGTTCAGACGCAAT CGCAGCAATCTGTTCAAAACGTTCTCTCTCCGAACGCGACACATTTCGAT AAGATGGCTGCTTTGAGCCACCGTACCTTCATCGAAAAATCTAATATGGT TCAAGAGAAATTTGCTGGTCGCAAAGTCATTGCTTGTATGATTATGAAGC GCGCGGAGAGTGACGAAGGAGTAGTCGTTGCTCTTGGTGCAGGTAATCGA TGTATAACGGGACAGCGGCTAAGCATGGAAGGAAAAGTAGTTAACGACTC GCACGCGGAAATCGTTTGTCGCCGTGCGTTCATTTCGTACTTATATAAGG AGCTAGAGAATCATATTGCAGGTAAGCAATCGATATTTCAAAACGGTGGC TCAAACGGAAAATTCAGTGTCAAAGAAGGTGTTTCGTTTCATTTGTATAT CAGTACTGCGCCTTGTGGAGATGGTGCCTTGTTTACACCGAGACAAGATG AGAAAATATCGGATTTCCCTAAAAAACATTCGCCCGTTTTTTCGTCTAAA GTACACGGAATAACCCGATCGAAGATTGAAAATGGGGAAGGGACAATCCC GATTGAGAAAGAAGAAGCAGTACAGACTTTTGATGGAATACTTCGGGGAC AGCGTTTACGTACGATGTCTTGTAGTGATAAAATATGCCGTTGGAATGTG GTCGGTGTGCAGGGAGCGTTATTGAGTCATTTTATGGATCCTGTCTATTT GGGCTCGCTTACACTAGGTTATCTTTATGATCACGGGCATTTATGTAGAG CTATTTGTTGCAGGTTAGATAAGAACAGCACTGGAGATTTCGAAGGAAAA CTAGCTGAGCCGTTCCGTTTAAACCACCCTTGGATTGGGCGTGTCACCCA ATATGAAGCTGGGCGGGAGACGGAGAAAACGAATAACATTAGTATAAATT GGAGTTTCTATGATACGACACCTGAAGTCACAGACGGCCGGACCGGTGCT CAAATGAGCCGTACCGGCGGAATTCCAACGCCTTCTCGGCTTTGTAAATA TGAAATGTTAAATCGGTTTCGTTCATTGATCGGGAAGACGAATGAACACA AACATTTGAGGGAAGATCAAAGTTATCGCGAGTTGAAAGACAGTGCGTTA GAATTTCAAAACACAAAACAACTCATGATGGAAACGTTACGAACAATGAA TTATGGACCGTGGGTTAAGAAACCAAGGGAGCAGGACATGTTCTGATTTT GAATATACATAAGAGCTTTCTTCATGGAAATCTTTTCATCCGAAAAATGA TTACTTTAATCGTAGAAATTTTAGCGAGACTAATTTTAGCGTTCTAGCGA GTTTTCCCTATTTTCGCTAAAATAAATCTCGCTAAAACACGCCGAATCGA CAGATCGCTAAAATTTATCCGTGCGAAATGTCTGGTTATATTGGGTTGGT GTAATTTAAGATGCACGATCTAACGATTTACGATTCACGATGCGCGATCC ATGCATAAAGTATG

Coding sequence (CDS) from alignment at sc0000217:417915..424128-

>TCONS_00015870 ID=TCONS_00015870|Name=TCONS_00015870|organism=Clytia hemisphaerica|type=CDS|length=9060bp|location=Sequence derived from alignment at sc0000217:417915..424128- (Clytia hemisphaerica)
GTCATTTTAAAGGACTGCGTTCAGACGCAATCGCAGCAATCTGTTCAAAA
CGTTCTCTCTCCGAACGCGACACATTTCGATAAGATGGCTGCTTTGAGCC
ACCGTACCTTCATCGAAAAATCTAATATGGTTCAAGAGAAATTTGCTGGT
CGCAAAGTCATTGCTTGTATGATTATGAAGCGCGCGGAGAGTGACGAAGG
AGTAGTCGTTGCTCTTGGTGCAGGTAATCGATGTATAACGGGACAGCGGC
TAAGCATGGAAGGAAAAGTAGTTAACGACTCGCACGCGGAAATCGTTTGT
CGCCGTGCGTTCATTTCGTACTTATATAAGGAGCTAGAGAATCATATTGC
AGGTAAGCAATCGATATTTCAAAACGGTGGCTCAAACGGAAAATTCAGTG
TCAAAGAAGGTGTTTCGTTTCATTTGTATATCAGTACTGCGCCTTGTGGA
GATGGTGCCTTGTTTACACCGAGACAAGATGAGAAAATATCGGATTTCCC
TAAAAAACATTCGCCCGTTTTTTCGTCTAAAGTACACGGAATAACCCGAT
CGAAGATTGAAAATGGGGAAGGGACAATCCCGATTGAGAAAGAAGAAGCA
GTACAGACTTTTGATGGAATACTTCGGGGACAGCGTTTACGTACGATGTC
TTGTAGTGATAAAATATGCCGTTGGAATGTGGTCGGTGTGCAGGGAGCGT
TATTGAGTCATTTTATGGATCCTGTCTATTTGGGCTCGCTTACACTAGGT
TATCTTTATGATCACGGGCATTTATGTAGAGCTATTTGTTGCAGGTTAGA
TAAGAACAGCACTGGAGATTTCGAAGGAAAACTAGCTGAGCCGTTCCGTT
TAAACCACCCTTGGATTGGGCGTGTCACCCAATATGAAGCTGGGCGGGAG
ACGGAGAAAACGAATAACATTAGTATAAATTGGAGTTTCTATGATACGAC
ACCTGAAGTCACAGACGGCCGGACCGGTGCTCAAATGAGCCGTACCGGCG
GAATTCCAACGCCTTCTCGGCTTTGTAAATATGAAATGTTAAATCGGTTT
CGTTCATTGATCGGGAAGACGAATGAACACAAACATTTGAGGGAAGATCA
AAGTTATCGCGAGTTGAAAGACAGTGCGTTAGAATTTCAAAACACAAAAC
AACTCATGATGGAAACGTTACGAACAATGAATTATGGACCGTGGGTTAAG
AAACCAAGGGAGCAGGACATGTTCTGAGTTTAGTGTTGAAACAACCTGGT
TTTGGCCTCGAAGCATGGAAAATCAATCCGAACTCTCCGACAGGTACACC
GTCATCACTGCCAACGCAGCCAACACTTGCATCGAATCCACTTCTCCAGA
AGACGTTCAATCCAGCGCAATCTCCTCCTATTGCTCAAAATACACCTTTA
ACCAAAAAACAACGGAAGCAACTCAACAAAATGAACGCACAATCAACACC
AAATTTGACTGTCACTCTTGACAACAGCTTTGGAGGTTCTCGATCCATAT
CCACGCCACCTTTAACCAAAAAACAACGAAAACAACTGAACAAACATCAA
TCACAATCTGCTTCAAACATGATGTCTTCGCCAGTAATAACAGCAAATGC
AAGCTTTGGATCTCCATACAACACTCCTCTAACGAAGAAACAGAAAAAAC
AGCTCAACACGCCCCTTATAACTCCACCGAAAACTGATTTCATGGTTTCT
GCAGATATCTTTAACGCTTTGAACAAGAATCCAGTATCAGCGCTGAACGA
GTTATGCCAAAAGAACGGGCGAACTGTTTCATTTGATTTGGTTGCGGAGA
ATCGGTTCAATCAGAAGAACAAATTTACGGTTGCAGCAAACGTTAGCGGT
AGGATGTATGATGCAGTGACAGCCTCAAATATGAAAGATGCACGACGAGA
GGCCGCAGATGTCGCATTGAAGTCCAATCACTTGTACAAAGCTCTCCTGT
CTTCATCAATCACAGCAGCAACAACAAAAGTCAAGAAGTTCTAGATTTGT
TGAAGCAGTTCCCACGATCCTTATCAACCAAGGAAATTGAGAAGAATTTT
TATCGTGTGTCAAAACAGCAACTGCAAACAACACTGGATCAACTCTGTGC
TGGAGAACCAAGGTCTTCATACTCAATCATCAAATCCATTACTTATGAAC
AGTTCATATAATTTTCAACAACAACAGCAAGGACAAGGCAAGAATAAGAA
GAAAAAGAAAAATCAAGCAAGATTTCAACCCTATGAAAGACAACTTGTCA
ATCAGACTGTAGGCAGTCATTTTAAAGGACTGCGTTCAGACGCAATCGCA
GCAATCTGTTCAAAACGTTCTCTCTCCGAACGCGACACATTTCGATAAGA
TGGCTGCTTTGAGCCACCGTACCTTCATCGAAAAATCTAATATGGTTCAA
GAGAAATTTGCTGGTCGCAAAGTCATTGCTTGTATGATTATGAAGCGCGC
GGAGAGTGACGAAGGAGTAGTCGTTGCTCTTGGTGCAGGTAATCGATGTA
TAACGGGACAGCGGCTAAGCATGGAAGGAAAAGTAGTTAACGACTCGCAC
GCGGAAATCGTTTGTCGCCGTGCGTTCATTTCGTACTTATATAAGGAGCT
AGAGAATCATATTGCAGGTAAGCAATCGATATTTCAAAACGGTGGCTCAA
ACGGAAAATTCAGTGTCAAAGAAGGTGTTTCGTTTCATTTGTATATCAGT
ACTGCGCCTTGTGGAGATGGTGCCTTGTTTACACCGAGACAAGATGAGAA
AATATCGGATTTCCCTAAAAAACATTCGCCCGTTTTTTCGTCTAAAGTAC
ACGGAATAACCCGATCGAAGATTGAAAATGGGGAAGGGACAATCCCGATT
GAGAAAGAAGAAGCAGTACAGACTTTTGATGGAATACTTCGGGGACAGCG
TTTACGTACGATGTCTTGTAGTGATAAAATATGCCGTTGGAATGTGGTCG
GTGTGCAGGGAGCGTTATTGAGTCATTTTATGGATCCTGTCTATTTGGGC
TCGCTTACACTAGGTTATCTTTATGATCACGGGCATTTATGTAGAGCTAT
TTGTTGCAGGTTAGATAAGAACAGCACTGGAGATTTCGAAGGAAAACTAG
CTGAGCCGTTCCGTTTAAACCACCCTTGGATTGGGCGTGTCACCCAATAT
GAAGCTGGGCGGGAGACGGAGAAAACGAATAACATTAGTATAAATTGGAG
TTTCTATGATACGACACCTGAAGTCACAGACGGCCGGACCGGTGCTCAAA
TGAGCCGTACCGGCGGAATTCCAACGCCTTCTCGGCTTTGTAAATATGAA
ATGTTAAATCGGTTTCGTTCATTGATCGGGAAGACGAATGAACACAAACA
TTTGAGGGAAGATCAAAGTTATCGCGAGTTGAAAGACAGTGCGTTAGAAT
TTCAAAACACAAAACAACTCATGATGGAAACGTTACGAACAATGAATTAT
GGACCGTGGGTTAAGAAACCAAGGGAGCAGGACATGTTCTGAGTTTAGTG
TTGAAACAACCTGGTTTTGGCCTCGAAGCATGGAAAATCAATCCGAACTC
TCCGACAGGTACACCGTCATCACTGCCAACGCAGCCAACACTTGCATCGA
ATCCACTTCTCCAGAAGACGTTCAATCCAGCGCAATCTCCTCCTATTGCT
CAAAATACACCTTTAACCAAAAAACAACGGAAGCAACTCAACAAAATGAA
CGCACAATCAACACCAAATTTGACTGTCACTCTTGACAACAGCTTTGGAG
GTTCTCGATCCATATCCACGCCACCTTTAACCAAAAAACAACGAAAACAA
CTGAACAAACATCAATCACAATCTGCTTCAAACATGATGTCTTCGCCAGT
AATAACAGCAAATGCAAGCTTTGGATCTCCATACAACACTCCTCTAACGA
AGAAACAGAAAAAACAGCTCAACACGCCCCTTATAACTCCACCGAAAACT
GATTTCATGGTTTCTGCAGATATCTTTAACGCTTTGAACAAGAATCCAGT
ATCAGCGCTGAACGAGTTATGCCAAAAGAACGGGCGAACTGTTTCATTTG
ATTTGGTTGCGGAGAATCGGTTCAATCAGAAGAACAAATTTACGGTTGCA
GCAAACGTTAGCGGTAGGATGTATGATGCAGTGACAGCCTCAAATATGAA
AGATGCACGACGAGAGGCCGCAGATGTCGCATTGAAGTCCAATCACTTGT
ACAAAGCTCTCCTGTCTTCATCAATCACAGCAGCAACAACAAAAGTCAAG
AAGTTCTAGATTTGTTGAAGCAGTTCCCACGATCCTTATCAACCAAGGAA
ATTGAGAAGAATTTTTATCGTGTGTCAAAACAGCAACTGCAAACAACACT
GGATCAACTCTGTGCTGGAGAACCAAGGTCTTCATACTCAATCATCAAAT
CCATTACTTATGAACAGTTCATATAATTTTCAACAACAACAGCAAGGACA
AGGCAAGAATAAGAAGAAAAAGAAAAATCAAGCAAGATTTCAACCCTATG
AAAGACAACTTGTCAATCAGACTGTAGGCAGTCATTTTAAAGGACTGCGT
TCAGACGCAATCGCAGCAATCTGTTCAAAACGTTCTCTCTCCGAACGCGA
CACATTTCGATAAGATGGCTGCTTTGAGCCACCGTACCTTCATCGAAAAA
TCTAATATGGTTCAAGAGAAATTTGCTGGTCGCAAAGTCATTGCTTGTAT
GATTATGAAGCGCGCGGAGAGTGACGAAGGAGTAGTCGTTGCTCTTGGTG
CAGGTAATCGATGTATAACGGGACAGCGGCTAAGCATGGAAGGAAAAGTA
GTTAACGACTCGCACGCGGAAATCGTTTGTCGCCGTGCGTTCATTTCGTA
CTTATATAAGGAGCTAGAGAATCATATTGCAGGTAAGCAATCGATATTTC
AAAACGGTGGCTCAAACGGAAAATTCAGTGTCAAAGAAGGTGTTTCGTTT
CATTTGTATATCAGTACTGCGCCTTGTGGAGATGGTGCCTTGTTTACACC
GAGACAAGATGAGAAAATATCGGATTTCCCTAAAAAACATTCGCCCGTTT
TTTCGTCTAAAGTACACGGAATAACCCGATCGAAGATTGAAAATGGGGAA
GGGACAATCCCGATTGAGAAAGAAGAAGCAGTACAGACTTTTGATGGAAT
ACTTCGGGGACAGCGTTTACGTACGATGTCTTGTAGTGATAAAATATGCC
GTTGGAATGTGGTCGGTGTGCAGGGAGCGTTATTGAGTCATTTTATGGAT
CCTGTCTATTTGGGCTCGCTTACACTAGGTTATCTTTATGATCACGGGCA
TTTATGTAGAGCTATTTGTTGCAGGTTAGATAAGAACAGCACTGGAGATT
TCGAAGGAAAACTAGCTGAGCCGTTCCGTTTAAACCACCCTTGGATTGGG
CGTGTCACCCAATATGAAGCTGGGCGGGAGACGGAGAAAACGAATAACAT
TAGTATAAATTGGAGTTTCTATGATACGACACCTGAAGTCACAGACGGCC
GGACCGGTGCTCAAATGAGCCGTACCGGCGGAATTCCAACGCCTTCTCGG
CTTTGTAAATATGAAATGTTAAATCGGTTTCGTTCATTGATCGGGAAGAC
GAATGAACACAAACATTTGAGGGAAGATCAAAGTTATCGCGAGTTGAAAG
ACAGTGCGTTAGAATTTCAAAACACAAAACAACTCATGATGGAAACGTTA
CGAACAATGAATTATGGACCGTGGGTTAAGAAACCAAGGGAGCAGGACAT
GTTCTGAGTTTAGTGTTGAAACAACCTGGTTTTGGCCTCGAAGCATGGAA
AATCAATCCGAACTCTCCGACAGGTACACCGTCATCACTGCCAACGCAGC
CAACACTTGCATCGAATCCACTTCTCCAGAAGACGTTCAATCCAGCGCAA
TCTCCTCCTATTGCTCAAAATACACCTTTAACCAAAAAACAACGGAAGCA
ACTCAACAAAATGAACGCACAATCAACACCAAATTTGACTGTCACTCTTG
ACAACAGCTTTGGAGGTTCTCGATCCATATCCACGCCACCTTTAACCAAA
AAACAACGAAAACAACTGAACAAACATCAATCACAATCTGCTTCAAACAT
GATGTCTTCGCCAGTAATAACAGCAAATGCAAGCTTTGGATCTCCATACA
ACACTCCTCTAACGAAGAAACAGAAAAAACAGCTCAACACGCCCCTTATA
ACTCCACCGAAAACTGATTTCATGGTTTCTGCAGATATCTTTAACGCTTT
GAACAAGAATCCAGTATCAGCGCTGAACGAGTTATGCCAAAAGAACGGGC
GAACTGTTTCATTTGATTTGGTTGCGGAGAATCGGTTCAATCAGAAGAAC
AAATTTACGGTTGCAGCAAACGTTAGCGGTAGGATGTATGATGCAGTGAC
AGCCTCAAATATGAAAGATGCACGACGAGAGGCCGCAGATGTCGCATTGA
AGTCCAATCACTTGTACAAAGCTCTCCTGTCTTCATCAATCACAGCAGCA
ACAACAAAAGTCAAGAAGTTCTAGATTTGTTGAAGCAGTTCCCACGATCC
TTATCAACCAAGGAAATTGAGAAGAATTTTTATCGTGTGTCAAAACAGCA
ACTGCAAACAACACTGGATCAACTCTGTGCTGGAGAACCAAGGTCTTCAT
ACTCAATCATCAAATCCATTACTTATGAACAGTTCATATAATTTTCAACA
ACAACAGCAAGGACAAGGCAAGAATAAGAAGAAAAAGAAAAATCAAGCAA
GATTTCAACCCTATGAAAGACAACTTGTCAATCAGACTGTAGGCAGTCAT
TTTAAAGGACTGCGTTCAGACGCAATCGCAGCAATCTGTTCAAAACGTTC
TCTCTCCGAACGCGACACATTTCGATAAGATGGCTGCTTTGAGCCACCGT
ACCTTCATCGAAAAATCTAATATGGTTCAAGAGAAATTTGCTGGTCGCAA
AGTCATTGCTTGTATGATTATGAAGCGCGCGGAGAGTGACGAAGGAGTAG
TCGTTGCTCTTGGTGCAGGTAATCGATGTATAACGGGACAGCGGCTAAGC
ATGGAAGGAAAAGTAGTTAACGACTCGCACGCGGAAATCGTTTGTCGCCG
TGCGTTCATTTCGTACTTATATAAGGAGCTAGAGAATCATATTGCAGGTA
AGCAATCGATATTTCAAAACGGTGGCTCAAACGGAAAATTCAGTGTCAAA
GAAGGTGTTTCGTTTCATTTGTATATCAGTACTGCGCCTTGTGGAGATGG
TGCCTTGTTTACACCGAGACAAGATGAGAAAATATCGGATTTCCCTAAAA
AACATTCGCCCGTTTTTTCGTCTAAAGTACACGGAATAACCCGATCGAAG
ATTGAAAATGGGGAAGGGACAATCCCGATTGAGAAAGAAGAAGCAGTACA
GACTTTTGATGGAATACTTCGGGGACAGCGTTTACGTACGATGTCTTGTA
GTGATAAAATATGCCGTTGGAATGTGGTCGGTGTGCAGGGAGCGTTATTG
AGTCATTTTATGGATCCTGTCTATTTGGGCTCGCTTACACTAGGTTATCT
TTATGATCACGGGCATTTATGTAGAGCTATTTGTTGCAGGTTAGATAAGA
ACAGCACTGGAGATTTCGAAGGAAAACTAGCTGAGCCGTTCCGTTTAAAC
CACCCTTGGATTGGGCGTGTCACCCAATATGAAGCTGGGCGGGAGACGGA
GAAAACGAATAACATTAGTATAAATTGGAGTTTCTATGATACGACACCTG
AAGTCACAGACGGCCGGACCGGTGCTCAAATGAGCCGTACCGGCGGAATT
CCAACGCCTTCTCGGCTTTGTAAATATGAAATGTTAAATCGGTTTCGTTC
ATTGATCGGGAAGACGAATGAACACAAACATTTGAGGGAAGATCAAAGTT
ATCGCGAGTTGAAAGACAGTGCGTTAGAATTTCAAAACACAAAACAACTC
ATGATGGAAACGTTACGAACAATGAATTATGGACCGTGGGTTAAGAAACC
AAGGGAGCAGGACATGTTCTGAGTTTAGTGTTGAAACAACCTGGTTTTGG
CCTCGAAGCATGGAAAATCAATCCGAACTCTCCGACAGGTACACCGTCAT
CACTGCCAACGCAGCCAACACTTGCATCGAATCCACTTCTCCAGAAGACG
TTCAATCCAGCGCAATCTCCTCCTATTGCTCAAAATACACCTTTAACCAA
AAAACAACGGAAGCAACTCAACAAAATGAACGCACAATCAACACCAAATT
TGACTGTCACTCTTGACAACAGCTTTGGAGGTTCTCGATCCATATCCACG
CCACCTTTAACCAAAAAACAACGAAAACAACTGAACAAACATCAATCACA
ATCTGCTTCAAACATGATGTCTTCGCCAGTAATAACAGCAAATGCAAGCT
TTGGATCTCCATACAACACTCCTCTAACGAAGAAACAGAAAAAACAGCTC
AACACGCCCCTTATAACTCCACCGAAAACTGATTTCATGGTTTCTGCAGA
TATCTTTAACGCTTTGAACAAGAATCCAGTATCAGCGCTGAACGAGTTAT
GCCAAAAGAACGGGCGAACTGTTTCATTTGATTTGGTTGCGGAGAATCGG
TTCAATCAGAAGAACAAATTTACGGTTGCAGCAAACGTTAGCGGTAGGAT
GTATGATGCAGTGACAGCCTCAAATATGAAAGATGCACGACGAGAGGCCG
CAGATGTCGCATTGAAGTCCAATCACTTGTACAAAGCTCTCCTGTCTTCA
TCAATCACAGCAGCAACAACAAAAGTCAAGAAGTTCTAGATTTGTTGAAG
CAGTTCCCACGATCCTTATCAACCAAGGAAATTGAGAAGAATTTTTATCG
TGTGTCAAAACAGCAACTGCAAACAACACTGGATCAACTCTGTGCTGGAG
AACCAAGGTCTTCATACTCAATCATCAAATCCATTACTTATGAACAGTTC
ATATAATTTTCAACAACAACAGCAAGGACAAGGCAAGAATAAGAAGAAAA
AGAAAAATCAAGCAAGATTTCAACCCTATGAAAGACAACTTGTCAATCAG
ACTGTAGGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008860XLOC_008860Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015870-exon-sc0000217-1575043694:423968..424128TCONS_00015870-exon-sc0000217-1575043694:423968..424128Clytia hemisphaericaexon
TCONS_00015870-exon-sc0000217-1575043694:422003..422185TCONS_00015870-exon-sc0000217-1575043694:422003..422185Clytia hemisphaericaexon
TCONS_00015870-exon-sc0000217-1575043694:419869..420563TCONS_00015870-exon-sc0000217-1575043694:419869..420563Clytia hemisphaericaexon
TCONS_00015870-exon-sc0000217-1575043694:417915..419409TCONS_00015870-exon-sc0000217-1575043694:417915..419409Clytia hemisphaericaexon
TCONS_00015870-exon-sc0000217-1510915933:423968..424128TCONS_00015870-exon-sc0000217-1510915933:423968..424128Clytia hemisphaericaexon
TCONS_00015870-exon-sc0000217-1510915933:422003..422185TCONS_00015870-exon-sc0000217-1510915933:422003..422185Clytia hemisphaericaexon
TCONS_00015870-exon-sc0000217-1510915933:419869..420563TCONS_00015870-exon-sc0000217-1510915933:419869..420563Clytia hemisphaericaexon
TCONS_00015870-exon-sc0000217-1510915933:417915..419409TCONS_00015870-exon-sc0000217-1510915933:417915..419409Clytia hemisphaericaexon
TCONS_00015870-exon-sc0000217-1491911889:423968..424128TCONS_00015870-exon-sc0000217-1491911889:423968..424128Clytia hemisphaericaexon
TCONS_00015870-exon-sc0000217-1491911889:422003..422185TCONS_00015870-exon-sc0000217-1491911889:422003..422185Clytia hemisphaericaexon
TCONS_00015870-exon-sc0000217-1491911889:419869..420563TCONS_00015870-exon-sc0000217-1491911889:419869..420563Clytia hemisphaericaexon
TCONS_00015870-exon-sc0000217-1491911889:417915..419409TCONS_00015870-exon-sc0000217-1491911889:417915..419409Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015870-proteinTCONS_00015870-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000217supercontigsc0000217:417915..424128 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.7141 12.4251 3.96698 3.39761 19.4878 13.2324 12.2707 11.5308 7.49246 9.4908 8.65517 8.46516 8.52219 7.26235 9.78086 9.81388 11.0226 11.2511 8.019 7.06633 9.69742 9.64532 12.697 12.2561 8.61121 11.0215 5.12931 6.51766 6.6429 7.26123
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR014720dsRBD_dom
IPR002466A_deamin
IPR011991WHTH_DNA-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004000adenosine deaminase activity
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006396 RNA processing
molecular_function GO:0004000 adenosine deaminase activity
molecular_function GO:0003723 RNA binding
Blast
BLAST of TCONS_00015870 vs. Swiss-Prot (Human)
Match: DSRAD (Double-stranded RNA-specific adenosine deaminase OS=Homo sapiens GN=ADAR PE=1 SV=4)

HSP 1 Score: 385.571 bits (989), Expect = 2.116e-116
Identity = 213/511 (41.68%), Postives = 290/511 (56.75%), Query Frame = 2
Query:  818 ADIFNALNKNPVSALNELCQKNGRTVSFDLVAENRFNQKNKFTVAANVSGRMYDAVTASNMKDARREAADVALKVILKD---------------CXXXXXXXXXXXXXXPNA----------THFDKMAALSHRTFIEKSNMVQEKFAGRKVIACMIMKRAESDEGVVVALGAGNRCITGQRLSMEGKVVNDSHAEIVCRRAFISYLYKEL--ENHIAGKQSIFQNGGSNGKFSVKEGVSFHLYISTAPCGDGALFTPR-QDEKISDFPKKHSPVFSSKVHGITRSKIENGEGTIPIEKEEAVQTFDGILRGQRLRTMSCSDKICRWNVVGVQGALLSHFMDPVYLGSLTLGYLYDHGHLCRAICCRLDKNSTGDFEGKLAEPFRLNHPWIGRVTQYEAGRETEKTNNISINWSFYDTTP-EVTDGRTGAQMSRTGGIPTPSRLCKYEMLNRFRSLIGKTNEHKHLREDQSYRELKDSALEFQNTKQLMMETLRTMNYGPWVKKPREQDMF 2263
             ++   LN NPV  L E  + +G    F LV ++    + KF   A V GR + AV A + K  ++EAAD AL+V++ +                  +  +  +    SP A          T  D++A LSHR F   +N  Q    GRK++A +IMK+   D GVVV+LG GNRC+ G  LS++G+ VND HAEI+ RR FI +LY EL   N    K SIF+      K  +K+ VSFHLYISTAPCGDGALF     D  +     +H PVF +   G  R+K+ENGEGTIP+E  + V T+DGI  G+RLRTMSCSDKI RWNV+G+QGALL+HF+ P+YL S+TLGYL+  GHL RAICCR+ ++ +  FE  L  PF +NHP +GRV+ Y++ R++ KT   S+NW   D    E+ DG  G   +  G     SR+ K  +   F+ L         LR   SY E K +A +++  K    + L+ M YG W+ KP+E+  F
Sbjct:  717 GELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVLIGENEKAERMGFTEVTPVTGASLRRTMLLLSRSPEAQPKTLPLTGSTFHDQIAMLSHRCFNTLTNSFQPSLLGRKILAAIIMKKDSEDMGVVVSLGTGNRCVKGDSLSLKGETVNDCHAEIISRRGFIRFLYSELMKYNSQTAKDSIFEPAKGGEKLQIKKTVSFHLYISTAPCGDGALFDKSCSDRAMESTESRHYPVFENPKQGKLRTKVENGEGTIPVESSDIVPTWDGIRLGERLRTMSCSDKILRWNVLGLQGALLTHFLQPIYLKSVTLGYLFSQGHLTRAICCRVTRDGSA-FEDGLRHPFIVNHPKVGRVSIYDSKRQSGKTKETSVNWCLADGYDLEILDGTRG---TVDGPRNELSRVSKKNIFLLFKKLCSFRYRRDLLR--LSYGEAKKAARDYETAKNYFKKGLKDMGYGNWISKPQEEKNF 1221          
The following BLAST results are available for this feature:
BLAST of TCONS_00015870 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DSRAD2.116e-11641.68Double-stranded RNA-specific adenosine deaminase O... [more]
back to top