TCONS_00015870-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00015870-protein
Unique NameTCONS_00015870-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length754

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00015870-protein ID=TCONS_00015870-protein|Name=TCONS_00015870-protein|organism=Clytia hemisphaerica|type=polypeptide|length=754bp
NQGLHTQSSNPLLMNSSYNFQQQQQGQGKNKKKKKNQARFQPYERQLVNQ
TVGIQSLVQSSPVFINHSSNNKSQEVLDLLKQFPRSLSTKEIEKNFYRVS
KQQLQTTLDQLCAGGLVLKQPGFGLEAWKINPNSPTGTPSSLPTQPTLAS
NPLLQKTFNPAQSPPIAQNTPLTKKQRKQLNKMNAQSTPNLTVTLDNSFG
GSRSISTPPLTKKQRKQLNKHQSQSASNMMSSPVITANASFGSPYNTPLT
KKQKKQLNTPLITPPKTDFMVSADIFNALNKNPVSALNELCQKNGRTVSF
DLVAENRFNQKNKFTVAANVSGRMYDAVTASNMKDARREAADVALKVILK
DCVQTQSQQSVQNVLSPNATHFDKMAALSHRTFIEKSNMVQEKFAGRKVI
ACMIMKRAESDEGVVVALGAGNRCITGQRLSMEGKVVNDSHAEIVCRRAF
ISYLYKELENHIAGKQSIFQNGGSNGKFSVKEGVSFHLYISTAPCGDGAL
FTPRQDEKISDFPKKHSPVFSSKVHGITRSKIENGEGTIPIEKEEAVQTF
DGILRGQRLRTMSCSDKICRWNVVGVQGALLSHFMDPVYLGSLTLGYLYD
HGHLCRAICCRLDKNSTGDFEGKLAEPFRLNHPWIGRVTQYEAGRETEKT
NNISINWSFYDTTPEVTDGRTGAQMSRTGGIPTPSRLCKYEMLNRFRSLI
GKTNEHKHLREDQSYRELKDSALEFQNTKQLMMETLRTMNYGPWVKKPRE
QDMF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_008860XLOC_008860Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00015870TCONS_00015870Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014720dsRBD_dom
IPR002466A_deamin
IPR011991WHTH_DNA-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004000adenosine deaminase activity
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006396 RNA processing
molecular_function GO:0004000 adenosine deaminase activity
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014720Double-stranded RNA-binding domainSMARTSM00358DRBM_3coord: 283..349
e-value: 2.0E-9
score: 47.3
IPR014720Double-stranded RNA-binding domainPFAMPF00035dsrmcoord: 283..347
e-value: 2.8E-7
score: 31.1
IPR014720Double-stranded RNA-binding domainPROSITEPS50137DS_RBDcoord: 282..350
score: 16.724
IPR002466Adenosine deaminase/editaseSMARTSM00552adara_8coord: 370..754
e-value: 4.6E-131
score: 451.4
IPR002466Adenosine deaminase/editasePFAMPF02137A_deamincoord: 417..748
e-value: 1.2E-104
score: 350.2
IPR002466Adenosine deaminase/editasePROSITEPS50141A_DEAMIN_EDITASEcoord: 417..754
score: 87.625
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 58..133
e-value: 0.0017
score: 17.6
NoneNo IPR availableGENE3D3.30.160.20coord: 272..375
e-value: 7.1E-15
score: 54.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 129..230
NoneNo IPR availableCDDcd00048DSRMcoord: 282..348
e-value: 3.45205E-10
score: 56.1267
NoneNo IPR availableSUPERFAMILY54768dsRNA-binding domain-likecoord: 274..350

Blast
[Close]
BLAST of TCONS_00015870-protein vs. Swiss-Prot (Human)
Match: DSRAD (Double-stranded RNA-specific adenosine deaminase OS=Homo sapiens GN=ADAR PE=1 SV=4)

HSP 1 Score: 392.504 bits (1007), Expect = 2.667e-121
Identity = 214/511 (41.88%), Postives = 294/511 (57.53%), Query Frame = 0 
Query:  273 ADIFNALNKNPVSALNELCQKNGRTVSFDLVAENRFNQKNKFTVAANVSGRMYDAVTASNMKDARREAADVALKVILKDCVQTQ----------SQQSVQNVL-----SPNA----------THFDKMAALSHRTFIEKSNMVQEKFAGRKVIACMIMKRAESDEGVVVALGAGNRCITGQRLSMEGKVVNDSHAEIVCRRAFISYLYKEL--ENHIAGKQSIFQNGGSNGKFSVKEGVSFHLYISTAPCGDGALFTPR-QDEKISDFPKKHSPVFSSKVHGITRSKIENGEGTIPIEKEEAVQTFDGILRGQRLRTMSCSDKICRWNVVGVQGALLSHFMDPVYLGSLTLGYLYDHGHLCRAICCRLDKNSTGDFEGKLAEPFRLNHPWIGRVTQYEAGRETEKTNNISINWSFYDTTP-EVTDGRTGAQMSRTGGIPTPSRLCKYEMLNRFRSLIGKTNEHKHLREDQSYRELKDSALEFQNTKQLMMETLRTMNYGPWVKKPREQDMF 754
             ++   LN NPV  L E  + +G    F LV ++    + KF   A V GR + AV A + K  ++EAAD AL+V++ +  + +          +  S++  +     SP A          T  D++A LSHR F   +N  Q    GRK++A +IMK+   D GVVV+LG GNRC+ G  LS++G+ VND HAEI+ RR FI +LY EL   N    K SIF+      K  +K+ VSFHLYISTAPCGDGALF     D  +     +H PVF +   G  R+K+ENGEGTIP+E  + V T+DGI  G+RLRTMSCSDKI RWNV+G+QGALL+HF+ P+YL S+TLGYL+  GHL RAICCR+ ++ +  FE  L  PF +NHP +GRV+ Y++ R++ KT   S+NW   D    E+ DG  G   +  G     SR+ K  +   F+ L         LR   SY E K +A +++  K    + L+ M YG W+ KP+E+  F
Sbjct:  717 GELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVLIGENEKAERMGFTEVTPVTGASLRRTMLLLSRSPEAQPKTLPLTGSTFHDQIAMLSHRCFNTLTNSFQPSLLGRKILAAIIMKKDSEDMGVVVSLGTGNRCVKGDSLSLKGETVNDCHAEIISRRGFIRFLYSELMKYNSQTAKDSIFEPAKGGEKLQIKKTVSFHLYISTAPCGDGALFDKSCSDRAMESTESRHYPVFENPKQGKLRTKVENGEGTIPVESSDIVPTWDGIRLGERLRTMSCSDKILRWNVLGLQGALLTHFLQPIYLKSVTLGYLFSQGHLTRAICCRVTRDGSA-FEDGLRHPFIVNHPKVGRVSIYDSKRQSGKTKETSVNWCLADGYDLEILDGTRG---TVDGPRNELSRVSKKNIFLLFKKLCSFRYRRDLLR--LSYGEAKKAARDYETAKNYFKKGLKDMGYGNWISKPQEEKNF 1221
The following BLAST results are available for this feature:
BLAST of TCONS_00015870-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DSRAD2.667e-12141.88Double-stranded RNA-specific adenosine deaminase O... [more]
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