TCONS_00015860 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015860
Unique NameTCONS_00015860
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1319

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015860 ID=TCONS_00015860|Name=TCONS_00015860|organism=Clytia hemisphaerica|type=transcript|length=1319bp
AAACTCAGAGTTGTTTCTATATAATACATTACGTAATGATTTGTCATGAA
TACCTCGTCTCATGTATAAATAGAGCGCAGCGGTATCAGTTAATCAGTTC
ATCATTGACATTCAAGCACTTAAATCAATATACAACAGACATTTTCTAAC
ACATTTTCGTTCATCTACAACAAACTACGACCAATATACAACAGACATTT
TCGTCTATCTACAACAAACTACGACCAATATACAACACACATTTTCGTTT
ATCTACAACAAATTACGTTATCATGGTTTTCAAATACACAAAAGCCGTGT
GTAGAAGGATCCCGAAATCCATCGTTGATGACGGAATCCGAATGGACTTA
AACGAACCTTTGATAGATTACAAGAGAGCTGTCCAACAACATGAACACAT
GGTTCAATCTTTGGAGAAACTTGGTGTCAAGGTCACCGTATTGGAGACAG
ATGAATCAACACCAGATTGTGTTTTCGTTGAGGACCCTGCTGTTATTATC
GGTGATACCGTCTTAATCACAAACCCAGGACGTAAATCCCGGAAACCTGA
AACCAAAAAGATCAAAGAACACTTCAAGAAAAACGAGCCACATTTGAAAA
TCGTTGAAATGGAATCGCCAGCCGAGCTTGATGGAGGTGACGTCATGTTT
ACAGGCCGTGAAATTTTTGTTGGGCAATCGAGACGAACAAATAAAGCTGG
TTACTTGAAAGTTAAAGAAACATTCCCGGATTATCCCGTTCATGCTATCC
CGATCCCTGAAAATACACTTCATTTGTTGTCATGCATGAGTGCAGTTGAT
GAAGATACCATTATCTGTGGTGGTTCACCTGATGCTTCAGCTGCTCTGAA
GGTTGTCTTGGAAAAGACTACCTGCTTGTACAGTGTCATCAGAACCCCCG
ACGATGACGGAGCCAACTTGGTCAGTGTTAATGGTACCATTTTATGGAGA
TCTGATCTACCCGCTACCTCTAATATTATATCCAAATTGAACATTCCCAA
AATGGATATAGATGGATCAGAATTGAACAAAGTTGACGGGAGCTTGACTT
GCTGTTCCCTCTTGTACAATTAAACAgagaaactgaagaaaaaaaaacga
aacataatttttttgtaaaaaattctaACTTGTATAAAATCTAACTACTG
TCATTTTATTTTAGTCACAAGATTTAAAAATGTATCTTCACTGTTATTTT
tactttcattctaattgtaatgATGTAATCTAGGGTTTCATTTGTGTTAT
ATAAATTTTGTAATTATGTACTTACTTCTAGTCTTTATTTTGTAAACTGA
TTCctaaataaaaatcttt
Run BLAST on NCBI

protein sequence of Dimethylarginine dimethylaminohydrolase

>TCONS_00015860-protein ID=TCONS_00015860-protein|Name=Dimethylarginine dimethylaminohydrolase|organism=Clytia hemisphaerica|type=polypeptide|length=266bp
MVFKYTKAVCRRIPKSIVDDGIRMDLNEPLIDYKRAVQQHEHMVQSLEKL
GVKVTVLETDESTPDCVFVEDPAVIIGDTVLITNPGRKSRKPETKKIKEH
FKKNEPHLKIVEMESPAELDGGDVMFTGREIFVGQSRRTNKAGYLKVKET
FPDYPVHAIPIPENTLHLLSCMSAVDEDTIICGGSPDASAALKVVLEKTT
CLYSVIRTPDDDGANLVSVNGTILWRSDLPATSNIISKLNIPKMDIDGSE
LNKVDGSLTCCSLLYN
Run BLAST on NCBI

transcript from alignment at sc0000217:300034..301440-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015860 ID=TCONS_00015860|Name=TCONS_00015860|organism=Clytia hemisphaerica|type=transcript|length=1407bp|location=Sequence derived from alignment at sc0000217:300034..301440- (Clytia hemisphaerica)
AAACTCAGAGTTGTTTCTATATAATACATTACGTAATGATTTGTCATGAA
TACCTCGTCTCATGTATAAATAGAGCGCAGCGGTATCAGTTAATCAGTTC
ATCATTGACATTCAAGCACTTAAATCAATATACAACAGACATTTTCTAAC
ACATTTTCGTTCATCTACAACAAACTACGACCAATATACAACAGACATTT
TCGTCTATCTACAACAAACTACGACCAATATACAACACACATTTTCGTCT
ATCTACAACAAACTACGACCAATATACAACAGATATTTTCGTCTATCTAC
AACAAACTACGACCAATATACAACACACATTTTCGTTTATCTACAACAAA
TTACGTTATCATGGTTTTCAAATACACAAAAGCCGTGTGTAGAAGGATCC
CGAAATCCATCGTTGATGACGGAATCCGAATGGACTTAAACGAACCTTTG
ATAGATTACAAGAGAGCTGTCCAACAACATGAACACATGGTTCAATCTTT
GGAGAAACTTGGTGTCAAGGTCACCGTATTGGAGACAGATGAATCAACAC
CAGATTGTGTTTTCGTTGAGGACCCTGCTGTTATTATCGGTGATACCGTC
TTAATCACAAACCCAGGACGTAAATCCCGGAAACCTGAAACCAAAAAGAT
CAAAGAACACTTCAAGAAAAACGAGCCACATTTGAAAATCGTTGAAATGG
AATCGCCAGCCGAGCTTGATGGAGGTGACGTCATGTTTACAGGCCGTGAA
ATTTTTGTTGGGCAATCGAGACGAACAAATAAAGCTGGTTACTTGAAAGT
TAAAGAAACATTCCCGGATTATCCCGTTCATGCTATCCCGATCCCTGAAA
ATACACTTCATTTGTTGTCATGCATGAGTGCAGTTGATGAAGATACCATT
ATCTGTGGTGGTTCACCTGATGCTTCAGCTGCTCTGAAGGTTGTCTTGGA
AAAGACTACCTGCTTGTACAGTGTCATCAGAACCCCCGACGATGACGGAG
CCAACTTGGTCAGTGTTAATGGTACCATTTTATGGAGATCTGATCTACCC
GCTACCTCTAATATTATATCCAAATTGAACATTCCCAAAATGGATATAGA
TGGATCAGAATTGAACAAAGTTGACGGGAGCTTGACTTGCTGTTCCCTCT
TGTACAATTAAACAGAGAAACTGAAGAAAAAAAAACGAAACATAATTTTT
TTGTAAAAAATTCTAACTTGTATAAAATCTAACTACTGTCATTTTATTTT
AGTCACAAGATTTAAAAATGTATCTTCACTGTTATTTTTACTTTCATTCT
AATTGTAATGATGTAATCTAGGGTTTCATTTGTGTTATATAAATTTTGTA
ATTATGTACTTACTTCTAGTCTTTATTTTGTAAACTGATTCCTAAATAAA
AATCTTT

Coding sequence (CDS) from alignment at sc0000217:300034..301440-

>TCONS_00015860 ID=TCONS_00015860|Name=TCONS_00015860|organism=Clytia hemisphaerica|type=CDS|length=801bp|location=Sequence derived from alignment at sc0000217:300034..301440- (Clytia hemisphaerica)
ATGGTTTTCAAATACACAAAAGCCGTGTGTAGAAGGATCCCGAAATCCAT
CGTTGATGACGGAATCCGAATGGACTTAAACGAACCTTTGATAGATTACA
AGAGAGCTGTCCAACAACATGAACACATGGTTCAATCTTTGGAGAAACTT
GGTGTCAAGGTCACCGTATTGGAGACAGATGAATCAACACCAGATTGTGT
TTTCGTTGAGGACCCTGCTGTTATTATCGGTGATACCGTCTTAATCACAA
ACCCAGGACGTAAATCCCGGAAACCTGAAACCAAAAAGATCAAAGAACAC
TTCAAGAAAAACGAGCCACATTTGAAAATCGTTGAAATGGAATCGCCAGC
CGAGCTTGATGGAGGTGACGTCATGTTTACAGGCCGTGAAATTTTTGTTG
GGCAATCGAGACGAACAAATAAAGCTGGTTACTTGAAAGTTAAAGAAACA
TTCCCGGATTATCCCGTTCATGCTATCCCGATCCCTGAAAATACACTTCA
TTTGTTGTCATGCATGAGTGCAGTTGATGAAGATACCATTATCTGTGGTG
GTTCACCTGATGCTTCAGCTGCTCTGAAGGTTGTCTTGGAAAAGACTACC
TGCTTGTACAGTGTCATCAGAACCCCCGACGATGACGGAGCCAACTTGGT
CAGTGTTAATGGTACCATTTTATGGAGATCTGATCTACCCGCTACCTCTA
ATATTATATCCAAATTGAACATTCCCAAAATGGATATAGATGGATCAGAA
TTGAACAAAGTTGACGGGAGCTTGACTTGCTGTTCCCTCTTGTACAATTA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008858XLOC_008858Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
Dimethylarginine dimethylaminohydrolaseTCONS_00015860-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015860-exon-sc0000217-1575043694:301201..301440TCONS_00015860-exon-sc0000217-1575043694:301201..301440Clytia hemisphaericaexon
TCONS_00015860-exon-sc0000217-1575043694:300034..301112TCONS_00015860-exon-sc0000217-1575043694:300034..301112Clytia hemisphaericaexon
TCONS_00015860-exon-sc0000217-1510915933:301201..301440TCONS_00015860-exon-sc0000217-1510915933:301201..301440Clytia hemisphaericaexon
TCONS_00015860-exon-sc0000217-1510915933:300034..301112TCONS_00015860-exon-sc0000217-1510915933:300034..301112Clytia hemisphaericaexon
TCONS_00015860-exon-sc0000217-1491911889:301201..301440TCONS_00015860-exon-sc0000217-1491911889:301201..301440Clytia hemisphaericaexon
TCONS_00015860-exon-sc0000217-1491911889:300034..301112TCONS_00015860-exon-sc0000217-1491911889:300034..301112Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000217supercontigsc0000217:300034..301440 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.02278	0.810366	1.84564	1.02675	159.665	145.325	77.4586	112.34	111.045	258.739	93.5642	27.8703	15.1987	32.2874	8.82043	11.7055	2.23199	3.44351	105.424	309.812	1.60694	1.71835	8.50209	50.7303	76.319	88.7242	12.3683	8.54392	332.965	162.36
Blast
[Close]
BLAST of TCONS_00015860 vs. Swiss-Prot (Human)
Match: DDAH1 (N(G),N(G)-dimethylarginine dimethylaminohydrolase 1 OS=Homo sapiens GN=DDAH1 PE=1 SV=3)

HSP 1 Score: 177.563 bits (449), Expect = 2.462e-51
Identity = 116/276 (42.03%), Postives = 156/276 (56.52%), Query Frame = 3 
Query:  282 KYTKAVCRRIPKSIVDDGIRMDLNEPLIDYKRAVQQHEHMVQSL-EKLGVKVTVLETDESTPDCVFVEDPAVIIGDTVLITNPGRKSRKPETKKIKEHFKKNEPHLKIVEMESP-AELDGGDVMFTGREIFVGQSRRTNKAGYLKVKETFPDYPVHAIPIPENTLHLLSCMSAVDEDTIICGGSPDASAALKVVLEKTTCLYSVIRTPDDDGANLVSVN----GTILWR---SDLPATSNIISKLN----IPKMDIDGSELNKVDGSLTCCSLLYN 1070
            + T AV R +P+S+    +R    E  +D  RA +QH+  V  L  KLG++V  L  DES PDCVFVED AV+  +T LIT PG  SR+ E   +KE  +K +  L IVEM+   A LDGGDV+FTGRE FVG S+RTN+ G   + +TF DY V  +P+ +  LHL S  S    + I  G S  A  ALK++ + +   Y  +  PDD  AN + +N    G +L      + P ++ +  KL     IP   +  SEL KVDG LTCCS+L N
Sbjct:   12 RATHAVVRALPESLGQHALRSAKGEE-VDVARAERQHQLYVGVLGSKLGLQVVELPADESLPDCVFVEDVAVVCEETALITRPGAPSRRKEVDMMKEALEKLQ--LNIVEMKDENATLDGGDVLFTGREFFVGLSKRTNQRGAEILADTFKDYAVSTVPVADG-LHLKSFCSMAGPNLIAIGSSESAQKALKIMQQMSDHRYDKLTVPDDIAANCIYLNIPNKGHVLLHRTPEEYPESAKVYEKLKDHMLIP---VSMSELEKVDGLLTCCSVLIN 280
The following BLAST results are available for this feature:
BLAST of TCONS_00015860 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DDAH12.462e-5142.03N(G),N(G)-dimethylarginine dimethylaminohydrolase ... [more]
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