TCONS_00015843 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015843
Unique NameTCONS_00015843
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1015

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015843 ID=TCONS_00015843|Name=TCONS_00015843|organism=Clytia hemisphaerica|type=transcript|length=1015bp
aaacaaaaaattcttgaaatttgttgGAGCTAATCTTTAGCTAAGGTTAA
TTCCCAGTCGACTGAGTTACATCGGGTTGCAGTAAAGGTTAGGATTAGGT
ATTTCTCGGCTGCCGGTTATCTGAGTTCCCGTATATATATTCCAAGGGTG
TGTTTGCCCTGAGCTTATCTCTTCATCTGCAAGTTAAGCTTCCCCTCCCT
TCCCTGCCCCTTTTTATCTTTGTTTTGTTTGTGGTTCTGCCTTTCTCTCC
TTTCTTTTCAGATCTTATCCTGCTATCAAGGCGTGGTCATTGCAGCTGCA
GCGTTGGATCCTAATCTCACGGTTTTTCCCTAGGCAAGGTTTTTCGACCA
GAGAGATTAGGCCATTTGGGATGCATCGAGATACCAATTAGTTTCCGGTT
ACCACGTAACctttggcaatttttttttgttagttTATCCAGCTACTTGT
TTATAAGTCAAttacccgtcatctacacgggccTAAGCTGctcccgtcat
ctacacgggctaAGTTCGctcccgtcatctacacggacTAAGGTCGATCC
CGTCGTCTACACGGGTTAAGTTTGttcccgtcatctacacgggctaAGTT
CGctcccgtcatctacacggacTAAGGTCGATCCCGTCGTCTACACGGGT
TAAGTTTTGCTCCCGTCGTCTACACGGGCTATGGTCTCAcacccgtcatc
tacacgggttAAGCGTTCAGTTAGTTTAGGGGTGTTGGGTTACTACGTAA
CCTCTGGCAAGTTATTAGTCAGTTATCCAGATACTTATTCTAAGGTCAGG
CATCCGTTGTCTACACGGACTTAGGGCGTACCGTCATCTACACAGGCTTA
GGTGctacccgtcatctacacgggcatAGGTCgtacccgtcatctacacg
ggttAGGCGTTAAGTTTAGTCACAGCTTATCTTGATGCATCCCCAATGTC
ATCCCAAATTCCGTTTTGTACAATTTTTAATTTGCACTTTCATTCACCTT
TCGAAATATAATTTT
Run BLAST on NCBI

transcript from alignment at sc0000217:176689..178194-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015843 ID=TCONS_00015843|Name=TCONS_00015843|organism=Clytia hemisphaerica|type=transcript|length=1506bp|location=Sequence derived from alignment at sc0000217:176689..178194- (Clytia hemisphaerica)
AAACAAAAAATTCTTGAAATTTGTTGGAGCTAATCTTTAGCTAAGGTTAA
TTCCCAGTCGACTGAGTTACATCGGGTTGCAGTAAAGGTTAGGATTAGGT
ATTTCTCGGCTGCCGGTTATCTGAGTTCCCGTATATATATTCCAAGGGTG
TGTTTGCCCTGAGCTTATCTCTTCATCTGCAAGTTAAGCTTCCCCTCCCT
TCCCTGCCCCTTTTTATCTTTGTTTTGTTTGTGGTTCTGCCTTTCTCTCC
TTTCTTTTCAGATCTTATCCTGCTATCAAGGCGTGGTCATTGCAGCTGCA
GCGTTGGATCCTAATCTCACGGTTTTTCCCTAGGCAAGGTTTTTCGACCA
GAGAGATTAGGCCATTTGGGATGCATCGAGATACCAATTAGTTTCCGGTT
ACCACGTAACCTTTGGCAATTTTTTTTTGTTAGTTTATCCAGCTACTTGT
TTATAAGTCAATTACCCGTCATCTACACGGGCCTAAGCTGCTCCCGTCAT
CTACACGGGCTAAGTTCGCTCCCGTCATCTACACGGACTAAGGTCGATCC
CGTCGTCTACACGGGTTAAGTTTGTTCCCGTCATCTACACGGGCTAAGTT
CGCTCCCGTCATCTACACGGACTAAGGTCGATCCCGTCGTCTACACGGGT
TAAGTTTTGCTCCCGTCGTCTACACGGGCTATGGTCTCACACCCGTCATC
TACACGGGTTAAGTTTTGCTCCCGTCGTCTACACGGGCTATGGTCTCACA
CCCGTCATCTACACGGGTTAAGTTCGTTCCCGTCATGTACACGGGCTAAG
TTCGCTCCCGTCATCTACACGGACTAAGGTCGATCCCGTCGTCTACACGG
GTTAAGTTTTGCTCCCGTCGTCTACACGGGCTATGGTCTCACACCCGTCA
TCTACACGGGTTAAGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGT
TAGGCGTTCAGTTAGTTTAGGGGTGTTGGGTTACTACGTAACCTCTGGCA
AGTTATTAGTCAGTTATCCAGATACTTATTCTAAGGTCAGGCATCCGTTG
TCTACACGGACTTAGGGCGTACCGTCATCTACACAGGCTTAGGTGCTACC
CGTCATCTACACGGGCATAGGTCGTACCCGTCATCTACACGGGTTAGGCG
TTAAGTTTAGTCACAGCTTATCTTGATGCATCCCCAATGTCATCCCAAAT
TCCGTTTTGTACAATTTTTAATTTGCACTTTCATTCACCTTTCGAAATAT
AATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008854XLOC_008854Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015843-exon-sc0000217-1575043694:177483..178194TCONS_00015843-exon-sc0000217-1575043694:177483..178194Clytia hemisphaericaexon
TCONS_00015843-exon-sc0000217-1575043694:176689..176991TCONS_00015843-exon-sc0000217-1575043694:176689..176991Clytia hemisphaericaexon
TCONS_00015843-exon-sc0000217-1510915933:177483..178194TCONS_00015843-exon-sc0000217-1510915933:177483..178194Clytia hemisphaericaexon
TCONS_00015843-exon-sc0000217-1510915933:176689..176991TCONS_00015843-exon-sc0000217-1510915933:176689..176991Clytia hemisphaericaexon
TCONS_00015843-exon-sc0000217-1491911889:177483..178194TCONS_00015843-exon-sc0000217-1491911889:177483..178194Clytia hemisphaericaexon
TCONS_00015843-exon-sc0000217-1491911889:176689..176991TCONS_00015843-exon-sc0000217-1491911889:176689..176991Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000217supercontigsc0000217:176689..178194 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.31012	1.92526	0.669714	0.725771	6.08144	6.66738	5.44865	6.00244	2.0633	4.71473	5.5139	0.737782	0.628537	2.48623	2.817	2.28829	1.98818	4.17877	1.99495	2.12677	1.42562	1.37501	1.24285	1.64297	4.51793	3.27625	7.15784	4.30382	3.60638	6.58216
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015843 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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