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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015806 ID=TCONS_00015806|Name=TCONS_00015806|organism=Clytia hemisphaerica|type=transcript|length=4092bpRun BLAST on NCBI protein sequence of TCONS_00015806-protein >TCONS_00015806-protein ID=TCONS_00015806-protein|Name=TCONS_00015806-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1090bp FRSMKYCKDKTKRNKKFNDASTRTRNETDKKRKESNSVRSYFNQTFRSLARun BLAST on NCBI transcript from alignment at sc0000217:188458..215458+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00015806 ID=TCONS_00015806|Name=TCONS_00015806|organism=Clytia hemisphaerica|type=transcript|length=27001bp|location=Sequence derived from alignment at sc0000217:188458..215458+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000217:188458..215458+ >TCONS_00015806 ID=TCONS_00015806|Name=TCONS_00015806|organism=Clytia hemisphaerica|type=CDS|length=85098bp|location=Sequence derived from alignment at sc0000217:188458..215458+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00015806 vs. Swiss-Prot (Human)
Match: GBA2 (Non-lysosomal glucosylceramidase OS=Homo sapiens GN=GBA2 PE=1 SV=2) HSP 1 Score: 598.971 bits (1543), Expect = 0.000e+0 Identity = 302/581 (51.98%), Postives = 392/581 (67.47%), Query Frame = 1
Query: 1471 VVGVLLHHEGLKQKYTLSIAAMQVTEDAQQLVDVTTKVGFDPKSPCSKLWEDLWEDGKLTNKVGDQNNKKTYPGQXXXXXXXXXXXXXXXXXXEMQFAIAWDQPVIKFGAKSDVHYCRRYTRFFGNKGNACPAMCCYTFQNLSTWEEKIEKWQNPILNDCDLPAWFKSALFNELYFISDGGTVWLDIKRKKDSHGNLIPEHV-----------KKYGRFAYLEGHEYRMYNTYDVHFYASWALIMLWPKLQQSLQYDIATSVLDTDNEIRVMMMSGEKAYRKVPGCVPHDVGDPDDEPFIRVNAYCIHDTSCWKDLNLHFVLQVYRDYHLTNDKQFLMDMWPAVKSVMAYSMKQDTDGDGIIDNSGFADNTFDCWIVTGPSAYTGGLWLSALKCTIKIADIXXXXXXXXKYNGVLERGRRAFERKLWNGQYFNYDGSEKEHHNSIMAGQCAGQWYLHACDLGQKEDDIVFKREQIKSTLKVIFQNNVMRFEGGFMGAVNGMRADGTIDKDSLQAEEVWTGVTYALAATMIQQGMIREGFRTAEGVYRTVYEKWGLGFQTPEAFTAKKTFRSRGYMRPLSIW 3180
V G+LLHH L YT+++AA + FDP S ++W+DL +DG+L + G + T G +A AV ++ + ++F++AWD P I FGAK VHY RRYTRFFG G+A PA+ Y + WEE+I WQ+P+L+D LPAW+KSALFNELYF++DGGTVWL++ +DS +PE + + YGRF YLEG EYRMYNTYDVHFYAS+ALIMLWPKL+ SLQYD+A + L D R +MSG A K +PHD+GDPDDEP++RVNAY IHDT+ WKDLNL FVLQVYRDY+LT D+ FL DMWP +VM MK D D DG+I+N G+AD T+D W+ TGPSAY GGLWL+A+ +++A + D K++ +L RG+ A+ER LWNG+Y+NYD S + S+M+ QCAGQW+L AC LG+ + + VF + + L+ IF+ NV F GG MGAVNGM+ G DK S+Q++EVW GV Y LAATMIQ+G+ EGF+TAEG YRTV+E+ GL FQTPEA+ ++ FRS YMRPLSIW
Sbjct: 319 VRGLLLHHPTLPNPYTMAVAARVTAATTVTHI-----TAFDPDSTGQQVWQDLLQDGQLDSPTG--QSTPTQKGVGIAGAVCVSSKLRPRGQCRLEFSLAWDMPRIMFGAKGQVHY-RRYTRFFGQDGDAAPALSHYALCRYAEWEERISAWQSPVLDDRSLPAWYKSALFNELYFLADGGTVWLEVL--EDS----LPEELGRNMCHLRPTLRDYGRFGYLEGQEYRMYNTYDVHFYASFALIMLWPKLELSLQYDMALATLREDLTRRRYLMSGVMAPVKRRNVIPHDIGDPDDEPWLRVNAYLIHDTADWKDLNLKFVLQVYRDYYLTGDQNFLKDMWPVCLAVMESEMKFDKDHDGLIENGGYADQTYDGWVTTGPSAYCGGLWLAAVAVMVQMAALCGAQDIQDKFSSILSRGQEAYERLLWNGRYYNYDSSSRPQSRSVMSDQCAGQWFLKACGLGEGDTE-VFPTQHVVRALQTIFELNVQAFAGGAMGAVNGMQPHGVPDKSSVQSDEVWVGVVYGLAATMIQEGLTWEGFQTAEGCYRTVWERLGLAFQTPEAYCQQRVFRSLAYMRPLSIW 884 HSP 2 Score: 205.297 bits (521), Expect = 5.894e-54 Identity = 123/239 (51.46%), Postives = 158/239 (66.11%), Query Frame = 1
Query: 445 HVPPEYGWKVKLNHEFEERPRVFVF--PRLSQVTKLAGMAYRYVKFTHRERR-KGKAPIIDPYAVGACKQIYXXXXXXXXXXXXXXXXXXDFNRWQLVPGMYTYNTVEVNQFTVCIRKNGKTVYQHVLSPNLPKGRMNCDKNLQSWRWAFDGGRATYHALYPRAWTVYEIPQYSLRLTCRQVSPIFPNDYKDTSMPVGVFVWTAENLGCEDLEVSIMLTFQNGFGTTEDTAGGLYNEEF 1152
VPP +GW++ L HEF E+ + F LS + K GM RY+++ +R+ + K P ID +QIYG PLGGIG GTI RGW+G F RWQL PGMY + TV +QFTVC+R+ G+TVYQ VLS P L+SW W G A YHALYPRAWTVY++P ++ LTCRQ++PI P+DY+D+S+PVGVFVW EN G E L+VSIM + +NG G +D GGL+NE F
Sbjct: 80 QVPP-FGWRICLAHEFTEKRKPFQANNVSLSNMIKHIGMGLRYLQWWYRKTHVEKKTPFIDMINSVPLRQIYGCPLGGIGGGTITRGWRGQFCRWQLNPGMYQHRTVIADQFTVCLRREGQTVYQQVLSLERPS-------VLRSWNWGLCGYFAFYHALYPRAWTVYQLPGQNVTLTCRQITPILPHDYQDSSLPVGVFVWDVENEGDEALDVSIMFSMRNGLGGGDDAPGGLWNEPF 310 The following BLAST results are available for this feature:
BLAST of TCONS_00015806 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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