TCONS_00015805 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015805
Unique NameTCONS_00015805
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1835

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015805 ID=TCONS_00015805|Name=TCONS_00015805|organism=Clytia hemisphaerica|type=transcript|length=1835bp
CCTGCCTATTCCATCTTGAAGCTTCTATTTCCGAATCGGGAAATGCTTCT
TTATAGAACAAAAAGCGGAATCATAGAAGCAAATTCGAACCAATATAAAG
CACACCGCTTGGCGTGCTATAAGAGATTTTTATCAACGCGCTCGCTACCT
CGTGTAAAATCaccaaaaatcgggaaaattaaaacaaatttcagtcaaaa
aaGAAAGAGTGTGCTGGACCACAAACCTTCAAacatcaaaccaatcaaac
aaactcaaaaatgCCTCAAAATGAACATATTGAACTATCTATCAAACGTC
ATGGCAGAAAATTTGATCATTATGAAAAATTacGAAAGAAGGAAGGCAGA
GAGCCTCACAAACAAGCATTAAAAGCCAAAAAGCTAACTGGGTTAAAGGC
AAAGCTTTACAACAAGAAACGCCATGCTGAAAAAGTGCAACTCAAAAAGA
CCCTCAAAATGCACGAAGAGAAGAATACTAAGGCCAAGGATACCACTAAA
GTTCCAGATAGTGCTGTACCAGCCTATCTTTTGGACAGAGAGGGGCAATC
ACAGGCAAAAGTGCTCAGCAATATGATTaaacagaaaagaaaagaaaaag
ctGGAAAATGGGATGTTCCGTTGCCAAAGGTCAAAGCTATTGGGGAAGAT
GAAGTTTTTCGTGTTGTCAAGACTGGAAAATCCAAAAGGAAATCTTGGAA
AAGAATGGTTACAAAAGTTACATATGTTGGAGAAAACTTCACACGTAAAC
CTCCTAAATTTGAACGCTTTATCAGACCTAtgggtCTTAGATTCAAGAAA
GCTCATGTGACACATCCAGAGcTCAAAGCTACCTTCTGTTTACCAATGAT
TGGAGTGAAAAAGAATCCACAATCACCCATGTATACTTCACTTGGTGTGA
TCACTAAAGGAACTGTCATTGAGgtcAATGTCAGTGAGCTTGGCCTTGTT
ACCCAAGGTGGAAAAGTTGTGTGGGGTAAATATGCTCAAGTTACGAACAA
TCCGGAGAATGATGGTTGCATCAATGCTGTACTCTTGGTCTAAcatattt
ccttaaaaaaggaTGGTTGTTGTGGAAACCAAAAAATGTATCAATCAAGA
TCCCGGATAGCTCTGAGATGAATTGATAATGTGAGCCAGAGTTTTCTGCT
CTGGTTGAATCAGGGAGGGAGAAGGGTAATCTGGGGTAATAGGATTTAAA
AAAGGATCTGTATTAAACGCCCTTGAAATTGTGGAATTGAGCTGGGTTAG
CATGAAATGATTTATCAGAAAAGTAATTAGTCAATTCATTCTTATCACAT
AACATACTGACAGTAAAATACAAATCTAAATTCTTATCTTCACTTCCCCC
TTTCTCCCTCTCATTCGAAATATCTCAAAATCTTGGGTTCAAAATTTGGT
AGGGTTGTATTTAGACGTCGAGTTTTATGAGGTCAAGACCTGATTTTGTA
AGCACAAATTGCTCATTTTTAGTGTGATTGTCCAGCAcacttttgtaatt
atttttacgtctaaattttatttttctaaatataattTTATATTCGCTTA
TACTAGTATTTTTATTAGTATATTGtgataaatcgccaaaataataACAC
CTGATGTTATAATGGCGTCCATCGAACCACTGACTTGTGACTGACAAAAA
TTATTGTAGTTAAGGTTTTACATTTTTATCTAACcaatgatatttttgaa
aaacttttttgaatagACTACATGAGAGAAAGTTTTTGAGTTTCCTTTCC
TTTGACTTTGGTTCCGATTCTTCAAATCAGTACTATTTTACTAGTTTTTC
AATTCTGTCCTTGTACacaatttcaaattagctgc
Run BLAST on NCBI

protein sequence of TCONS_00015805-protein

>TCONS_00015805-protein ID=TCONS_00015805-protein|Name=TCONS_00015805-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
MPQNEHIELSIKRHGRKFDHYEKLRKKEGREPHKQALKAKKLTGLKAKLY
NKKRHAEKVQLKKTLKMHEEKNTKAKDTTKVPDSAVPAYLLDREGQSQAK
VLSNMIKQKRKEKAGKWDVPLPKVKAIGEDEVFRVVKTGKSKRKSWKRMV
TKVTYVGENFTRKPPKFERFIRPMGLRFKKAHVTHPELKATFCLPMIGVK
KNPQSPMYTSLGVITKGTVIEVNVSELGLVTQGGKVVWGKYAQVTNNPEN
DGCINAVLLV
Run BLAST on NCBI

transcript from alignment at sc0000217:180229..188179+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015805 ID=TCONS_00015805|Name=TCONS_00015805|organism=Clytia hemisphaerica|type=transcript|length=7951bp|location=Sequence derived from alignment at sc0000217:180229..188179+ (Clytia hemisphaerica)
CCTGCCTATTCCATCTTGAAGCTTCTATTTCCGAATCGGGAAATGCTTCT
TTATAGAACAAAAAGCGGAATCATAGAAGCAAATTCGAACCAATATAAAG
CACACCGCTTGGCGTGCTATAAGAGATTTTTATCAACGCGCTCGCTACCT
CGTGTAAAATCaccaaaaatcgggaaaattaaaacaaatttcagtcaaaa
aaGAAAGAGTGTGCTGGACCACAAACCTTCAAacatcaaaccaatcaaac
aaactcaaaaatggtaagaaacttcatcaatttatttttcattttttact
tgataCTCCTCTCAGTGTTGTTCTGTTGTGAAATTCTATGCAAAACTCGT
TAATGGTAGGCAATAGACCTAGTACGGTAAGGAGAGGAGTTAACGTGACA
GTTTGAATAGAGACGTGCATGATGTGACAACCCATACGGTCTCATtgttt
tgcataagattcccATTCCCACACTAAGATTCCACTGCCACTTTTCTATG
GGAAAAACCAGGACTctgggtagttgaaaaatgagctttagaaaaatgcg
aaaaaatctttgaaaagtcagaagaatcaaaacaatgggGTATGTCCTGA
acagatttcagaaatttttagGTCATCGTGTTTGAACCAAAATAGCAAAA
CATTCTTTTGGCCCAAAGATTTGATGTTAATGccacaaaattgttttttt
gcgcCTCTGTCCGAACATATGCACAGGCCACTTGGGTCATCTCATGTTCA
CaacttttttcaagttcaaaatcaCCAAATGGCCCAAAAAAGTTTGCCAT
ACCTTGTCCTTGGCCCTATGGAACCACGGAGACCCAGCAGGACACATGAA
ATCTtttgtttgttattttgatTGTTCTACTTCTGTTCCCCAAGACCCAA
ATAGGATGTGTTTGTAGAAAATGATACACCAAGAACCTTGTGGGAAAAAT
TGTGCAAAGACCTGGTGCATGATGTAGGGTCTTTCctaaatcaaaattta
acaGACATCCCCCTGCAGACAGAATATGCTATCATTTTGGTTAATATGAG
TGCATAATGTcttgaaaatgggaaaaaatcaGGTATTTTGAGGGGGCTcc
accagggttttttataatgactctGCCTTTACAAACTCCTATGACGTGTT
TTGAAGATGCGTGACTTTTCGTTATTCTCTTTAAAAAGAttgacaatttt
aaaaagttgtctTAAAGAATTTTCTATATCACTCTGCATTGGGGTGGATT
ATTACcctaaagaaaaacaggagttttctggactttcagaTGAGGAACAA
GGTTGCTTATTAATTCTGTTGCCTCCACCTTAAAAGTGATACTAAAAGAC
TTAAGCTACTTACTTGTGTTACTTGTGTGGTTGTTTGAGCATCCTGCTTC
AGGTAAGGTTCTTGGTGAACCACGCCTCTGTGTGATCAATCTGTCGAGAG
AAAAAGAATCTCAGCAGATATTTTTCANNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNGACATGAACAACTCGTTGCAAAATC
GATTTAGATTATTCAGCATTGATCTTTCTTCCATAGAGCATCCAGTTTTG
GGTAGTCCTTCAGGCCATGTTGACTTTGGAAGATTGAAATCGCCACCAAA
AATTATGTTTGGGACAGGTTCCAAGGCGGAAAGGGCTTGTTTCGCACCTT
TGAGCGGTGTAAGAAGGTCTTTAGCTGTTGATGGATTTCCAAACTGGagc
tttttgaaatctttcaaaGAAATAATCCTTGtcttcattttaaatttcaa
aacaaagtttctcTCATTCAGTGCTATtcctatttctatttctattttat
attattattaACCAATCTTTCATTGAAAAAGTGTGTGATATATAGATTAT
GAATATCTTCTAAAACTAATTTTGGGGAACCTTTTCCACAAGTTATTTTA
GATGAGAGATTTATTAATAGCACTTAAAGGAGTGATAGAAACCAGTACTT
TTTGGGTGGACATGGAAAGTATTTATGCATCAAAACTTAGCTGAATGTAT
AAATTTGAGATTTATGTTGTTTACCAATGGTGATTTTGATCCACAACCTT
GactcatttttttattatgatGATACATGCTTACTTTTAAATTCTTTAGC
CTCAAAATGAACATATTGAACTATCTATCAAACGTCATGGCAGAAAATTT
GATCATTATGAAAAATTGTAAGTTTCCATgttagttttattttcaaacaa
agTGCATTAGGacaatttttcattgtttttacaATTGGTTGTATTTTTTC
ACGTAAATGAAAATTATGAGGATTGCTTATATACAACCAAATTCATTTGC
CTCAGCATAATTTCTAACAttctgtaaattttgaaatttttttagacGAA
AGAAGGAAGGCAGAGAGCCTCACAAACAAGCATTAAAAGCCAAAAAGCTA
ACTGGGTTAAAGTAAGTATTATATTACATCCTCAAAAATTAGCAAATATG
TTaagattttcaaatatttttcattctttaatACATGAAGCCATTCATAA
CTTTTCAATTGCCTTAATGTAGCATTGGTTATtattttattgttattgtt
attgGCAAATTGGACTCAAAGTGATTTAACAAATTTAATTGTAATAAGCT
CGAGGATTTTCTCTGAATTTCTGATGTTTCATGACTCATTAAACCGATAA
ATCAATAGGGCAAAGCTTTACAACAAGAAACGCCATGCTGAAAAAGTGCA
ACTCAAAAAGACCCTCAAAATGCACGAAGAGAAGAATACTAAGGCCAAGG
ATACCACTAAAGTTCCAGATAGTGCTGTACCAGCCTATCTTTTGGACAGA
GAGGGGCAATCACAGGCAAAAGTGCTCAGCAATATGATTaaacagaaaag
aaaagaaaaagctgTAAGTTATTTTAAGAACTAAAAAATAAGCTATATAT
ATAGGGGATCAATGTGACACACGTGTGATGGTtgtaattttaatgaaatt
tacgATTCTTTAgtaattttcaagaaatttccatgatttattttattgat
tatATTTTGCTGGTTCTGCAGCATTTTTTCTAAAACCTTTTGGTTAAGTT
TTATTGAAGGCAATCTGATCAATAACCAATGCAATAACACCTAGCAGATT
CAATGTTATACCATCTAAGATGCAataggaaaataaaataaatgttaAAA
GTTTCACTTTGTGTACCATGTGTACCTTTTTTATATGATAGGGAAAATGG
GATGTTCCGTTGCCAAAGGTCAAAGCTATTGGGGAAGATGAAGTTTTTCG
TGTTGTCAAGACTGGAAAATCCAAAAGTAAGTGGCCAAATATTCACCAAA
GCTTTGTGTCATGTTCGGATGTTGTTTATTTTCCAATAATTTATTATAAT
GAAACCAGATCTTTTTAGCAGTAAGTTCAAAATGACAATGTTGTTCACAA
AATCGTGCTGCCTTTGAATATTGATGAGAGAAGGGAGCTATACATACATT
TTATACATTTAATTCAGGTTCACAAGCTATGTATGTCTGTGAACGAACAA
ACCCATAGCTTAGATGCAGGGTAACCTTTGACAGGGCAATCAATGGCGAC
TTTGTATGTCTGTGAACGAACAAACATTTATCAGTTTGAATCATTATTAA
AATTATTAAATggaatatttattttaaattagGGAAATCTTGGAAAAGAA
TGGTTACAAAAGTTACATATGTTGGAGAAAACTTCACACGTAAACCTCCT
AAATTTGAACGCTTTATCAGACCTAtggtatttaattttttctataaTAA
TTTTTAAGGGTATATTATATACTTATATGGAGCAATTTTCCCTACCATTT
TCCCTTCATTCGATGAACTGAGAGGAACTTATTCCAAAGATGTTGTGTTT
TGATTTGTATTTAtaagttaatttttatttttcagggtCTTAGATTCAAG
AAAGCTCATGTGACACATCCAGAGGTATTATACTTATTTTATACTCTCCT
CGATACCCAGTATTTCTTGTAGTAATCGTTGTAATTGACAATATGTGTCC
CTGCAAGCAATTTGGAGCACATTGAAAATGGGCCGATCCTTAAAAAGCCG
AACTTTTGGCCGATATGGACCGGTCTGGACCGTTCNTTTGACAATATATA
CAAACTTTTTGAGTGgaaatttttgtatttattaTTTGAAGAAGACTATA
AATAACTAAAAGAGAACTGTGGAAGTTGGTTTGTGTTATGCATGCAGTTT
CTAGTATCAACACGTCATACAGATTAGGTTAAAATtacaacttttgaaat
tttacagcTCAAAGCTACCTTCTGTTTACCAATGATTGGAGTGAAAAAGA
ATCCACAATCACCCATGTATACTTCACTTGGTGTGATCACTAAAGGAACT
GTCATTGAGGTAAGCTTTGTTTTTTGAACTAACTGCAGAGGTCTTATAAA
TTAACCAATTTTGGTCGTTCGTCCTTCTGTTTATTACCTGCTTTTCTTGA
TCTTGCCTCAAtgattttgtatgattttttggcacaaaggtgcaaaatgg
caatgtctaaaatgtgacagatttttgtatgtgGGAGCCCCTTACCCCTT
ACCAATTTTCTTTATGTTTTAAATATTACGCCTCTCTGTGCTATGGTGTT
AACATTCCTTTTTCGCTCAAACATTTCTATCATAATTCAACAACGACCTT
TATCAGGTAGGTTCGTTTGATGAAGTTTGTTTGATGATTTTCACCCATAG
AAGCTTATTCAAacatttattgatattttttggtttattttcaattttta
ggtcAATGTCAGTGAGCTTGGCCTTGTTACCCAAGGTGGAAAAGTTGTGT
GGGGTAAGTATCACCAGTTTACAACATTATTGAAACCTATGCATAATCAT
TTGAGTCTTGACAATAACATAGAGGTACTgttttcaataatgtttttgat
atTTGGGTTATTTTCACATTACAAAGGGAATCTTTAtgtgaaatttctaa
attatgttgttgttgtcgttgttgttgCTGTTCTTTGTGAGGCTAGATAA
ATAACCATGGTCAAATGATTGCTgtcaattttaaccatttttttcaaatc
actTTCTATCACTATCAACGtcttttatgttgttttttcagGTAAATATG
CTCAAGTTACGAACAATCCGGAGAATGATGGTTGCATCAATGCTGTACTC
TTGGTCTAAcatatttccttaaaaaaggaTGGTTGTTGTGGAAACCAAAA
AATGTATCAATCAAGATCCCGGATAGCTCTGAGATGAATTGATAATGTGA
GCCAGAGTTTTCTGCTCTGGTTGAATCAGGGAGGGAGAAGGGTAATCTGG
GGTAATAGGATTTAAAAAAGGATCTGTATTAAACGCCCTTGAAATTGTGG
AATTGAGCTGGGTTAGCATGAAATGATTTATCAGAAAAGTAATTAGTCAA
TTCATTCTTATCACATAACATACTGACAGTAAAATACAAATCTAAATTCT
TATCTTCACTTCCCCCTTTCTCCCTCTCATTCGAAATATCTCAAAATCTT
GGGTTCAAAATTTGGTAGGGTTGTATTTAGACGTCGAGTTTTATGAGGTC
AAGACCTGATTTTGTAAGCACAAATTGCTCATTTTTAGTGTGATTGTCCA
GCAcacttttgtaattatttttacgtctaaattttatttttctaaatata
attTTATATTCGCTTATACTAGTATTTTTATTAGTATATTGtgataaatc
gccaaaataataACACCTGATGTTATAATGGCGTCCATCGAACCACTGAC
TTGTGACTGACAAAAATTATTGTAGTTAAGGTTTTACATTTTTATCTAAC
caatgatatttttgaaaaacttttttgaatagACTACATGAGAGAAAGTT
TTTGAGTTTCCTTTCCTTTGACTTTGGTTCCGATTCTTCAAATCAGTACT
ATTTTACTAGTTTTTCAATTCTGTCCTTGTACacaatttcaaattagctg
c

Coding sequence (CDS) from alignment at sc0000217:180229..188179+

>TCONS_00015805 ID=TCONS_00015805|Name=TCONS_00015805|organism=Clytia hemisphaerica|type=CDS|length=7830bp|location=Sequence derived from alignment at sc0000217:180229..188179+ (Clytia hemisphaerica)
atgCCTCAAAATGAACATATTGAACTATCTATCAAACGTCATGGCAGAAA
ATTTGATCATTATGAAAAATTacGAAAGAAGGAAGGCAGAGAGCCTCACA
AACAAGCATTAAAAGCCAAAAAGCTAACTGGGTTAAAGGCAAAGCTTTAC
AACAAGAAACGCCATGCTGAAAAAGTGCAACTCAAAAAGACCCTCAAAAT
GCACGAAGAGAAGAATACTAAGGCCAAGGATACCACTAAAGTTCCAGATA
GTGCTGTACCAGCCTATCTTTTGGACAGAGAGGGGCAATCACAGGCAAAA
GTGCTCAGCAATATGATTaaacagaaaagaaaagaaaaagctGGAAAATG
GGATGTTCCGTTGCCAAAGGTCAAAGCTATTGGGGAAGATGAAGTTTTTC
GTGTTGTCAAGACTGGAAAATCCAAAAGGAAATCTTGGAAAAGAATGGTT
ACAAAAGTTACATATGTTGGAGAAAACTTCACACGTAAACCTCCTAAATT
TGAACGCTTTATCAGACCTAtgggtCTTAGATTCAAGAAAGCTCATGTGA
CACATCCAGAGcTCAAAGCTACCTTCTGTTTACCAATGATTGGAGTGAAA
AAGAATCCACAATCACCCATGTATACTTCACTTGGTGTGATCACTAAAGG
AACTGTCATTGAGgtcAATGTCAGTGAGCTTGGCCTTGTTACCCAAGGTG
GAAAAGTTGTGTGGGGTAAATATGCTCAAGTTACGAACAATCCGGAGAAT
GATGGTTGCATCAATGCTGTACTCTTGGTCTAAatgCCTCAAAATGAACA
TATTGAACTATCTATCAAACGTCATGGCAGAAAATTTGATCATTATGAAA
AATTacGAAAGAAGGAAGGCAGAGAGCCTCACAAACAAGCATTAAAAGCC
AAAAAGCTAACTGGGTTAAAGGCAAAGCTTTACAACAAGAAACGCCATGC
TGAAAAAGTGCAACTCAAAAAGACCCTCAAAATGCACGAAGAGAAGAATA
CTAAGGCCAAGGATACCACTAAAGTTCCAGATAGTGCTGTACCAGCCTAT
CTTTTGGACAGAGAGGGGCAATCACAGGCAAAAGTGCTCAGCAATATGAT
TaaacagaaaagaaaagaaaaagctGGAAAATGGGATGTTCCGTTGCCAA
AGGTCAAAGCTATTGGGGAAGATGAAGTTTTTCGTGTTGTCAAGACTGGA
AAATCCAAAAGGAAATCTTGGAAAAGAATGGTTACAAAAGTTACATATGT
TGGAGAAAACTTCACACGTAAACCTCCTAAATTTGAACGCTTTATCAGAC
CTAtgggtCTTAGATTCAAGAAAGCTCATGTGACACATCCAGAGcTCAAA
GCTACCTTCTGTTTACCAATGATTGGAGTGAAAAAGAATCCACAATCACC
CATGTATACTTCACTTGGTGTGATCACTAAAGGAACTGTCATTGAGgtcA
ATGTCAGTGAGCTTGGCCTTGTTACCCAAGGTGGAAAAGTTGTGTGGGGT
AAATATGCTCAAGTTACGAACAATCCGGAGAATGATGGTTGCATCAATGC
TGTACTCTTGGTCTAAatgCCTCAAAATGAACATATTGAACTATCTATCA
AACGTCATGGCAGAAAATTTGATCATTATGAAAAATTacGAAAGAAGGAA
GGCAGAGAGCCTCACAAACAAGCATTAAAAGCCAAAAAGCTAACTGGGTT
AAAGGCAAAGCTTTACAACAAGAAACGCCATGCTGAAAAAGTGCAACTCA
AAAAGACCCTCAAAATGCACGAAGAGAAGAATACTAAGGCCAAGGATACC
ACTAAAGTTCCAGATAGTGCTGTACCAGCCTATCTTTTGGACAGAGAGGG
GCAATCACAGGCAAAAGTGCTCAGCAATATGATTaaacagaaaagaaaag
aaaaagctGGAAAATGGGATGTTCCGTTGCCAAAGGTCAAAGCTATTGGG
GAAGATGAAGTTTTTCGTGTTGTCAAGACTGGAAAATCCAAAAGGAAATC
TTGGAAAAGAATGGTTACAAAAGTTACATATGTTGGAGAAAACTTCACAC
GTAAACCTCCTAAATTTGAACGCTTTATCAGACCTAtgggtCTTAGATTC
AAGAAAGCTCATGTGACACATCCAGAGcTCAAAGCTACCTTCTGTTTACC
AATGATTGGAGTGAAAAAGAATCCACAATCACCCATGTATACTTCACTTG
GTGTGATCACTAAAGGAACTGTCATTGAGgtcAATGTCAGTGAGCTTGGC
CTTGTTACCCAAGGTGGAAAAGTTGTGTGGGGTAAATATGCTCAAGTTAC
GAACAATCCGGAGAATGATGGTTGCATCAATGCTGTACTCTTGGTCTAAa
tgCCTCAAAATGAACATATTGAACTATCTATCAAACGTCATGGCAGAAAA
TTTGATCATTATGAAAAATTacGAAAGAAGGAAGGCAGAGAGCCTCACAA
ACAAGCATTAAAAGCCAAAAAGCTAACTGGGTTAAAGGCAAAGCTTTACA
ACAAGAAACGCCATGCTGAAAAAGTGCAACTCAAAAAGACCCTCAAAATG
CACGAAGAGAAGAATACTAAGGCCAAGGATACCACTAAAGTTCCAGATAG
TGCTGTACCAGCCTATCTTTTGGACAGAGAGGGGCAATCACAGGCAAAAG
TGCTCAGCAATATGATTaaacagaaaagaaaagaaaaagctGGAAAATGG
GATGTTCCGTTGCCAAAGGTCAAAGCTATTGGGGAAGATGAAGTTTTTCG
TGTTGTCAAGACTGGAAAATCCAAAAGGAAATCTTGGAAAAGAATGGTTA
CAAAAGTTACATATGTTGGAGAAAACTTCACACGTAAACCTCCTAAATTT
GAACGCTTTATCAGACCTAtgggtCTTAGATTCAAGAAAGCTCATGTGAC
ACATCCAGAGcTCAAAGCTACCTTCTGTTTACCAATGATTGGAGTGAAAA
AGAATCCACAATCACCCATGTATACTTCACTTGGTGTGATCACTAAAGGA
ACTGTCATTGAGgtcAATGTCAGTGAGCTTGGCCTTGTTACCCAAGGTGG
AAAAGTTGTGTGGGGTAAATATGCTCAAGTTACGAACAATCCGGAGAATG
ATGGTTGCATCAATGCTGTACTCTTGGTCTAAatgCCTCAAAATGAACAT
ATTGAACTATCTATCAAACGTCATGGCAGAAAATTTGATCATTATGAAAA
ATTacGAAAGAAGGAAGGCAGAGAGCCTCACAAACAAGCATTAAAAGCCA
AAAAGCTAACTGGGTTAAAGGCAAAGCTTTACAACAAGAAACGCCATGCT
GAAAAAGTGCAACTCAAAAAGACCCTCAAAATGCACGAAGAGAAGAATAC
TAAGGCCAAGGATACCACTAAAGTTCCAGATAGTGCTGTACCAGCCTATC
TTTTGGACAGAGAGGGGCAATCACAGGCAAAAGTGCTCAGCAATATGATT
aaacagaaaagaaaagaaaaagctGGAAAATGGGATGTTCCGTTGCCAAA
GGTCAAAGCTATTGGGGAAGATGAAGTTTTTCGTGTTGTCAAGACTGGAA
AATCCAAAAGGAAATCTTGGAAAAGAATGGTTACAAAAGTTACATATGTT
GGAGAAAACTTCACACGTAAACCTCCTAAATTTGAACGCTTTATCAGACC
TAtgggtCTTAGATTCAAGAAAGCTCATGTGACACATCCAGAGcTCAAAG
CTACCTTCTGTTTACCAATGATTGGAGTGAAAAAGAATCCACAATCACCC
ATGTATACTTCACTTGGTGTGATCACTAAAGGAACTGTCATTGAGgtcAA
TGTCAGTGAGCTTGGCCTTGTTACCCAAGGTGGAAAAGTTGTGTGGGGTA
AATATGCTCAAGTTACGAACAATCCGGAGAATGATGGTTGCATCAATGCT
GTACTCTTGGTCTAAatgCCTCAAAATGAACATATTGAACTATCTATCAA
ACGTCATGGCAGAAAATTTGATCATTATGAAAAATTacGAAAGAAGGAAG
GCAGAGAGCCTCACAAACAAGCATTAAAAGCCAAAAAGCTAACTGGGTTA
AAGGCAAAGCTTTACAACAAGAAACGCCATGCTGAAAAAGTGCAACTCAA
AAAGACCCTCAAAATGCACGAAGAGAAGAATACTAAGGCCAAGGATACCA
CTAAAGTTCCAGATAGTGCTGTACCAGCCTATCTTTTGGACAGAGAGGGG
CAATCACAGGCAAAAGTGCTCAGCAATATGATTaaacagaaaagaaaaga
aaaagctGGAAAATGGGATGTTCCGTTGCCAAAGGTCAAAGCTATTGGGG
AAGATGAAGTTTTTCGTGTTGTCAAGACTGGAAAATCCAAAAGGAAATCT
TGGAAAAGAATGGTTACAAAAGTTACATATGTTGGAGAAAACTTCACACG
TAAACCTCCTAAATTTGAACGCTTTATCAGACCTAtgggtCTTAGATTCA
AGAAAGCTCATGTGACACATCCAGAGcTCAAAGCTACCTTCTGTTTACCA
ATGATTGGAGTGAAAAAGAATCCACAATCACCCATGTATACTTCACTTGG
TGTGATCACTAAAGGAACTGTCATTGAGgtcAATGTCAGTGAGCTTGGCC
TTGTTACCCAAGGTGGAAAAGTTGTGTGGGGTAAATATGCTCAAGTTACG
AACAATCCGGAGAATGATGGTTGCATCAATGCTGTACTCTTGGTCTAAat
gCCTCAAAATGAACATATTGAACTATCTATCAAACGTCATGGCAGAAAAT
TTGATCATTATGAAAAATTacGAAAGAAGGAAGGCAGAGAGCCTCACAAA
CAAGCATTAAAAGCCAAAAAGCTAACTGGGTTAAAGGCAAAGCTTTACAA
CAAGAAACGCCATGCTGAAAAAGTGCAACTCAAAAAGACCCTCAAAATGC
ACGAAGAGAAGAATACTAAGGCCAAGGATACCACTAAAGTTCCAGATAGT
GCTGTACCAGCCTATCTTTTGGACAGAGAGGGGCAATCACAGGCAAAAGT
GCTCAGCAATATGATTaaacagaaaagaaaagaaaaagctGGAAAATGGG
ATGTTCCGTTGCCAAAGGTCAAAGCTATTGGGGAAGATGAAGTTTTTCGT
GTTGTCAAGACTGGAAAATCCAAAAGGAAATCTTGGAAAAGAATGGTTAC
AAAAGTTACATATGTTGGAGAAAACTTCACACGTAAACCTCCTAAATTTG
AACGCTTTATCAGACCTAtgggtCTTAGATTCAAGAAAGCTCATGTGACA
CATCCAGAGcTCAAAGCTACCTTCTGTTTACCAATGATTGGAGTGAAAAA
GAATCCACAATCACCCATGTATACTTCACTTGGTGTGATCACTAAAGGAA
CTGTCATTGAGgtcAATGTCAGTGAGCTTGGCCTTGTTACCCAAGGTGGA
AAAGTTGTGTGGGGTAAATATGCTCAAGTTACGAACAATCCGGAGAATGA
TGGTTGCATCAATGCTGTACTCTTGGTCTAAatgCCTCAAAATGAACATA
TTGAACTATCTATCAAACGTCATGGCAGAAAATTTGATCATTATGAAAAA
TTacGAAAGAAGGAAGGCAGAGAGCCTCACAAACAAGCATTAAAAGCCAA
AAAGCTAACTGGGTTAAAGGCAAAGCTTTACAACAAGAAACGCCATGCTG
AAAAAGTGCAACTCAAAAAGACCCTCAAAATGCACGAAGAGAAGAATACT
AAGGCCAAGGATACCACTAAAGTTCCAGATAGTGCTGTACCAGCCTATCT
TTTGGACAGAGAGGGGCAATCACAGGCAAAAGTGCTCAGCAATATGATTa
aacagaaaagaaaagaaaaagctGGAAAATGGGATGTTCCGTTGCCAAAG
GTCAAAGCTATTGGGGAAGATGAAGTTTTTCGTGTTGTCAAGACTGGAAA
ATCCAAAAGGAAATCTTGGAAAAGAATGGTTACAAAAGTTACATATGTTG
GAGAAAACTTCACACGTAAACCTCCTAAATTTGAACGCTTTATCAGACCT
AtgggtCTTAGATTCAAGAAAGCTCATGTGACACATCCAGAGcTCAAAGC
TACCTTCTGTTTACCAATGATTGGAGTGAAAAAGAATCCACAATCACCCA
TGTATACTTCACTTGGTGTGATCACTAAAGGAACTGTCATTGAGgtcAAT
GTCAGTGAGCTTGGCCTTGTTACCCAAGGTGGAAAAGTTGTGTGGGGTAA
ATATGCTCAAGTTACGAACAATCCGGAGAATGATGGTTGCATCAATGCTG
TACTCTTGGTCTAAatgCCTCAAAATGAACATATTGAACTATCTATCAAA
CGTCATGGCAGAAAATTTGATCATTATGAAAAATTacGAAAGAAGGAAGG
CAGAGAGCCTCACAAACAAGCATTAAAAGCCAAAAAGCTAACTGGGTTAA
AGGCAAAGCTTTACAACAAGAAACGCCATGCTGAAAAAGTGCAACTCAAA
AAGACCCTCAAAATGCACGAAGAGAAGAATACTAAGGCCAAGGATACCAC
TAAAGTTCCAGATAGTGCTGTACCAGCCTATCTTTTGGACAGAGAGGGGC
AATCACAGGCAAAAGTGCTCAGCAATATGATTaaacagaaaagaaaagaa
aaagctGGAAAATGGGATGTTCCGTTGCCAAAGGTCAAAGCTATTGGGGA
AGATGAAGTTTTTCGTGTTGTCAAGACTGGAAAATCCAAAAGGAAATCTT
GGAAAAGAATGGTTACAAAAGTTACATATGTTGGAGAAAACTTCACACGT
AAACCTCCTAAATTTGAACGCTTTATCAGACCTAtgggtCTTAGATTCAA
GAAAGCTCATGTGACACATCCAGAGcTCAAAGCTACCTTCTGTTTACCAA
TGATTGGAGTGAAAAAGAATCCACAATCACCCATGTATACTTCACTTGGT
GTGATCACTAAAGGAACTGTCATTGAGgtcAATGTCAGTGAGCTTGGCCT
TGTTACCCAAGGTGGAAAAGTTGTGTGGGGTAAATATGCTCAAGTTACGA
ACAATCCGGAGAATGATGGTTGCATCAATGCTGTACTCTTGGTCTAAatg
CCTCAAAATGAACATATTGAACTATCTATCAAACGTCATGGCAGAAAATT
TGATCATTATGAAAAATTacGAAAGAAGGAAGGCAGAGAGCCTCACAAAC
AAGCATTAAAAGCCAAAAAGCTAACTGGGTTAAAGGCAAAGCTTTACAAC
AAGAAACGCCATGCTGAAAAAGTGCAACTCAAAAAGACCCTCAAAATGCA
CGAAGAGAAGAATACTAAGGCCAAGGATACCACTAAAGTTCCAGATAGTG
CTGTACCAGCCTATCTTTTGGACAGAGAGGGGCAATCACAGGCAAAAGTG
CTCAGCAATATGATTaaacagaaaagaaaagaaaaagctGGAAAATGGGA
TGTTCCGTTGCCAAAGGTCAAAGCTATTGGGGAAGATGAAGTTTTTCGTG
TTGTCAAGACTGGAAAATCCAAAAGGAAATCTTGGAAAAGAATGGTTACA
AAAGTTACATATGTTGGAGAAAACTTCACACGTAAACCTCCTAAATTTGA
ACGCTTTATCAGACCTAtgggtCTTAGATTCAAGAAAGCTCATGTGACAC
ATCCAGAGcTCAAAGCTACCTTCTGTTTACCAATGATTGGAGTGAAAAAG
AATCCACAATCACCCATGTATACTTCACTTGGTGTGATCACTAAAGGAAC
TGTCATTGAGgtcAATGTCAGTGAGCTTGGCCTTGTTACCCAAGGTGGAA
AAGTTGTGTGGGGTAAATATGCTCAAGTTACGAACAATCCGGAGAATGAT
GGTTGCATCAATGCTGTACTCTTGGTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008840XLOC_008840Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015805-proteinTCONS_00015805-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015805-exon-sc0000217-1491911889:180229..180491TCONS_00015805-exon-sc0000217-1491911889:180229..180491Clytia hemisphaericaexon
TCONS_00015805-exon-sc0000217-1510915933:180229..180491TCONS_00015805-exon-sc0000217-1510915933:180229..180491Clytia hemisphaericaexon
TCONS_00015805-exon-sc0000217-1575043694:180229..180491TCONS_00015805-exon-sc0000217-1575043694:180229..180491Clytia hemisphaericaexon
TCONS_00015805-exon-sc0000217-1491911889:184328..184395TCONS_00015805-exon-sc0000217-1491911889:184328..184395Clytia hemisphaericaexon
TCONS_00015805-exon-sc0000217-1510915933:184328..184395TCONS_00015805-exon-sc0000217-1510915933:184328..184395Clytia hemisphaericaexon
TCONS_00015805-exon-sc0000217-1575043694:184328..184395TCONS_00015805-exon-sc0000217-1575043694:184328..184395Clytia hemisphaericaexon
TCONS_00015805-exon-sc0000217-1491911889:184574..184639TCONS_00015805-exon-sc0000217-1491911889:184574..184639Clytia hemisphaericaexon
TCONS_00015805-exon-sc0000217-1510915933:184574..184639TCONS_00015805-exon-sc0000217-1510915933:184574..184639Clytia hemisphaericaexon
TCONS_00015805-exon-sc0000217-1575043694:184574..184639TCONS_00015805-exon-sc0000217-1575043694:184574..184639Clytia hemisphaericaexon
TCONS_00015805-exon-sc0000217-1491911889:184887..185091TCONS_00015805-exon-sc0000217-1491911889:184887..185091Clytia hemisphaericaexon
TCONS_00015805-exon-sc0000217-1510915933:184887..185091TCONS_00015805-exon-sc0000217-1510915933:184887..185091Clytia hemisphaericaexon
TCONS_00015805-exon-sc0000217-1575043694:184887..185091TCONS_00015805-exon-sc0000217-1575043694:184887..185091Clytia hemisphaericaexon
TCONS_00015805-exon-sc0000217-1491911889:185420..185504TCONS_00015805-exon-sc0000217-1491911889:185420..185504Clytia hemisphaericaexon
TCONS_00015805-exon-sc0000217-1510915933:185420..185504TCONS_00015805-exon-sc0000217-1510915933:185420..185504Clytia hemisphaericaexon
TCONS_00015805-exon-sc0000217-1575043694:185420..185504TCONS_00015805-exon-sc0000217-1575043694:185420..185504Clytia hemisphaericaexon
TCONS_00015805-exon-sc0000217-1491911889:185861..185955TCONS_00015805-exon-sc0000217-1491911889:185861..185955Clytia hemisphaericaexon
TCONS_00015805-exon-sc0000217-1510915933:185861..185955TCONS_00015805-exon-sc0000217-1510915933:185861..185955Clytia hemisphaericaexon
TCONS_00015805-exon-sc0000217-1575043694:185861..185955TCONS_00015805-exon-sc0000217-1575043694:185861..185955Clytia hemisphaericaexon
TCONS_00015805-exon-sc0000217-1491911889:186114..186152TCONS_00015805-exon-sc0000217-1491911889:186114..186152Clytia hemisphaericaexon
TCONS_00015805-exon-sc0000217-1510915933:186114..186152TCONS_00015805-exon-sc0000217-1510915933:186114..186152Clytia hemisphaericaexon
TCONS_00015805-exon-sc0000217-1575043694:186114..186152TCONS_00015805-exon-sc0000217-1575043694:186114..186152Clytia hemisphaericaexon
TCONS_00015805-exon-sc0000217-1491911889:186486..186587TCONS_00015805-exon-sc0000217-1491911889:186486..186587Clytia hemisphaericaexon
TCONS_00015805-exon-sc0000217-1510915933:186486..186587TCONS_00015805-exon-sc0000217-1510915933:186486..186587Clytia hemisphaericaexon
TCONS_00015805-exon-sc0000217-1575043694:186486..186587TCONS_00015805-exon-sc0000217-1575043694:186486..186587Clytia hemisphaericaexon
TCONS_00015805-exon-sc0000217-1491911889:186980..187031TCONS_00015805-exon-sc0000217-1491911889:186980..187031Clytia hemisphaericaexon
TCONS_00015805-exon-sc0000217-1510915933:186980..187031TCONS_00015805-exon-sc0000217-1510915933:186980..187031Clytia hemisphaericaexon
TCONS_00015805-exon-sc0000217-1575043694:186980..187031TCONS_00015805-exon-sc0000217-1575043694:186980..187031Clytia hemisphaericaexon
TCONS_00015805-exon-sc0000217-1491911889:187320..188179TCONS_00015805-exon-sc0000217-1491911889:187320..188179Clytia hemisphaericaexon
TCONS_00015805-exon-sc0000217-1510915933:187320..188179TCONS_00015805-exon-sc0000217-1510915933:187320..188179Clytia hemisphaericaexon
TCONS_00015805-exon-sc0000217-1575043694:187320..188179TCONS_00015805-exon-sc0000217-1575043694:187320..188179Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000217supercontigsc0000217:180229..188179 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
152.406	163.578	122.066	125.634	187.285	151.529	199.504	198.828	275.668	163.863	322.41	372.889	473.789	490.558	339.536	264.216	250.639	331.806	263.763	284.65	394.092	373.737	245.344	271.59	262.771	295.775	259.84	333.855	141.938	171.926
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR022309Ribosomal_S8e/biogenesis_NSA2
Blast
[Close]
BLAST of TCONS_00015805 vs. Swiss-Prot (Human)
Match: NSA2 (Ribosome biogenesis protein NSA2 homolog OS=Homo sapiens GN=NSA2 PE=1 SV=1)

HSP 1 Score: 410.994 bits (1055), Expect = 1.242e-139
Identity = 205/260 (78.85%), Postives = 238/260 (91.54%), Query Frame = 3 
Query:  261 MPQNEHIELSIKRHGRKFDHYEKLRKKEGREPHXXXXXXXXXXXXXXXXYNKKRHAEKVQLKKTLKMHEEKNTKAKDTTKVPDSAVPAYLLDREGQSQAKVLSNMIKQKRKEKAGKWDVPLPKVKAIGEDEVFRVVKTGKSKRKSWKRMVTKVTYVGENFTRKPPKFERFIRPMGLRFKKAHVTHPELKATFCLPMIGVKKNPQSPMYTSLGVITKGTVIEVNVSELGLVTQGGKVVWGKYAQVTNNPENDGCINAVLLV 1040
            MPQNE+IEL  KR+G + D++EK RKKE RE H+++ KAKK+ GLKAKLY+K+RHAEK+Q+KKT+KMHE++NTK K+  K P  AVPAYLLDREGQS+AKVLSNMIKQKRKEKAGKW+VPLPKV+A GE EV +V++TGK K+K+WKRMVTKV +VG+ FTRKPPK+ERFIRPMGLRFKKAHVTHPELKATFCLP++GVKKNP SP+YT+LGVITKGTVIEVNVSELGLVTQGGKV+WGKYAQVTNNPENDGCINAVLLV
Sbjct:    1 MPQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVPLPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKKAHVTHPELKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGKYAQVTNNPENDGCINAVLLV 260
The following BLAST results are available for this feature:
BLAST of TCONS_00015805 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NSA21.242e-13978.85Ribosome biogenesis protein NSA2 homolog OS=Homo s... [more]
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