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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015783 ID=TCONS_00015783|Name=TCONS_00015783|organism=Clytia hemisphaerica|type=transcript|length=2117bp
TTGGGATATTGGTGATCAGCTATACTATTGGATGCCCAATCAATGTCTGG
GAGATTAAATTCTTAATATATCTATCTTGTTTTCTCGAAGTTTCAATGTT
CTTGACCCAACAGTAAGCAACGATGATGTTGTTGTCTTATCCCAAGACTC
TCCAAGTCCCAGAACTTATCAACGGTTTCAGATAATCGATCATTTTCACT
AATGACGGCTTTCAAAAcatgtgagaaaaaaattccggacgaaatctttt
cttttaaatcagCAGGACCACTCAAAACGTATCCCAACGACNNNNNNNNN
NNNNNNNNNNNNNTCATTTTCACTAATGACGGCTTTCAAAAcatgtgaga
aaaaaattccggacgaaatcttttcttttaaatcagCAGGACCACTCAAA
ACGTATCCCAACGACGAACTCAAAGCAATGGGCTGGCCAGACTTGCCAGT
AACAGCACCTTCAGTGTGTataaaattccaataaaagtttgagccaatca
aaatatcaataTCGATGGCTTTTTCATGATTTGGATCTGCCGGTTTTAAC
cctttcaaatgttcaaaacGTTTTTGACATTCGACTGTTTTCTGTCTCGA
AACGGGTTGACTGATTTCGGATACGTAGGCGTGTACAGGAACCTGTCCTT
TCGAAGTTTTCACGTTAAATTCGACCAAGGGTAAGGTTTTGACggttttg
ttgtttccgaaCGATTTGATACGAAGTTCCTTTTTTCCAATTTGCTTTAG
ATTCAGCTTTCGACTCAATGTGGGTGTAACATAACTCAACTGACTACCAG
GGTCAAAGAAAATTCTACTTTCGGACGAACGATTTTTCTCGACATTTTCG
ATTTTGGCTTTGGCTGTCTGTAGCAAAACGGTACACGAACTGCTTGCTAA
ATTCGACTGAGTATCTTCTGGCGTACCTTCCTCTTTCTTGAAGGTTTTAC
AAATACTGCTATGATGATTTTTTCGACAATGATAACAACTGCGCATCGAT
CTACAACTTTTACTATCATNACGCATGGAAAGGTACGGAACGGTTGTCTT
CTTTTGCTGTCTGTAGGACGACCGGTACTCATTAGGTTTTCGTAATTTTC
GACACCTTCATTCTCTGTAAGAAGGACCTTTTCTCGAGCTTCGACTTCTT
GTTGTAAGGCTTCGAGTAACTTATCGATTGCCCATACATCCTTTCCGAAC
TTTCTAGTCAACAACAATTTTATTTCTTGTGGCAATTTCGACATAATAAC
TGGTGCGAGCATATGACCGTAACGTTTCTCCTCCAGTCCGATTCCACGAA
GATTTCTAATTTGAATTTCGATGTTGTTGTAAAGCATTCTCAGTTCTTTG
ATATCGATAAAGTTTGATGTTGTTTCTAAGTTTAACAATTTATTCATATG
CGCACTAATAATTATCTGTTCGTCACCGAacctttcttttgaaattttga
gcgCAATATCGTAATTTTCGTTAGATAATGTTATACCTTGGATGCAAGAT
TCCGCTTCTCCTTCAAGTAAACTGGTGAGGTATGTCATTTTTTCGACGTT
GGTCATATCATCTCTCTGATGAACGGCACAATCAAATGtatcgaaaaatg
ttttccatTTCAACGGATCTCCATCGTAGGGTTTCAAACTCAATTTGGGT
AGACGAATATCAGCTTTCCGCCGTTTCTCTCGGGTACTTGTGACACTACT
ATCACTAACAGCAATTTTTGGGTTCTCTTCTGACAATTCACTTTTGACGA
CTAAAATCAACGACTCAACTCGACGCTCAACTTTGGAACACTTCTCATAT
TGTATTCCCATTTGCTCTTCATCGTCTAATTCATCCACGATGTTATCCGT
AATCTCGATGAtaatttgtaactttttatttaaaattttacaagtGGTTT
CAAGAGCgtttttgttacttttagcATCCTTGTTCCATTCTTCGCACTCC
AAAACCAACTTGTTAACATGATGTGAGAGCGTTGCGCTTCTTGCCAAGTT
TCTCAACATCAaccatttttcaactttttgccgcCCGTAGCGAGCTTGCG
AAGCGTAGGGTGGCctacatagcttcacgcaaggatatgggacaggaatc
tcgatttttgtttgttt Run BLAST on NCBI protein sequence of TCONS_00015783-protein >TCONS_00015783-protein ID=TCONS_00015783-protein|Name=TCONS_00015783-protein|organism=Clytia hemisphaerica|type=polypeptide|length=406bp
KQTKIEIPVPYPCVKLCRPPYASQARYGRQKVEKWLMLRNLARSATLSHH
VNKLVLECEEWNKDAKSNKNALETTCKILNKKLQIIIEITDNIVDELDDE
EQMGIQYEKCSKVERRVESLILVVKSELSEENPKIAVSDSSVTSTREKRR
KADIRLPKLSLKPYDGDPLKWKTFFDTFDCAVHQRDDMTNVEKMTYLTSL
LEGEAESCIQGITLSNENYDIALKISKERFGDEQIIISAHMNKLLNLETT
SNFIDIKELRMLYNNIEIQIRNLRGIGLEEKRYGHMLAPVIMSKLPQEIK
LLLTRKFGKDVWAIDKLLEALQQEVEAREKVLLTENEGVENYENLMSTGR
PTDSKRRQPFRTFPCXMIVKVVDRCAVVIIVEKIIIAVFVKPSRKRKVRQ
KILSRI Run BLAST on NCBI transcript from alignment at sc0000216:222995..225111 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015783 ID=TCONS_00015783|Name=TCONS_00015783|organism=Clytia hemisphaerica|type=transcript|length=2117bp|location=Sequence derived from alignment at sc0000216:222995..225111 (Clytia hemisphaerica)
aaacaaacaaaaatcgagattcctgtcccatatccttgcgtgaagctatg
tagGCCACCCTACGCTTCGCAAGCTCGCTACGGgcggcaaaaagttgaaa
aatggtTGATGTTGAGAAACTTGGCAAGAAGCGCAACGCTCTCACATCAT
GTTAACAAGTTGGTTTTGGAGTGCGAAGAATGGAACAAGGATgctaaaag
taacaaaaacGCTCTTGAAACCacttgtaaaattttaaataaaaagttac
aaattaTCATCGAGATTACGGATAACATCGTGGATGAATTAGACGATGAA
GAGCAAATGGGAATACAATATGAGAAGTGTTCCAAAGTTGAGCGTCGAGT
TGAGTCGTTGATTTTAGTCGTCAAAAGTGAATTGTCAGAAGAGAACCCAA
AAATTGCTGTTAGTGATAGTAGTGTCACAAGTACCCGAGAGAAACGGCGG
AAAGCTGATATTCGTCTACCCAAATTGAGTTTGAAACCCTACGATGGAGA
TCCGTTGAAatggaaaacatttttcgataCATTTGATTGTGCCGTTCATC
AGAGAGATGATATGACCAACGTCGAAAAAATGACATACCTCACCAGTTTA
CTTGAAGGAGAAGCGGAATCTTGCATCCAAGGTATAACATTATCTAACGA
AAATTACGATATTGcgctcaaaatttcaaaagaaaggtTCGGTGACGAAC
AGATAATTATTAGTGCGCATATGAATAAATTGTTAAACTTAGAAACAACA
TCAAACTTTATCGATATCAAAGAACTGAGAATGCTTTACAACAACATCGA
AATTCAAATTAGAAATCTTCGTGGAATCGGACTGGAGGAGAAACGTTACG
GTCATATGCTCGCACCAGTTATTATGTCGAAATTGCCACAAGAAATAAAA
TTGTTGTTGACTAGAAAGTTCGGAAAGGATGTATGGGCAATCGATAAGTT
ACTCGAAGCCTTACAACAAGAAGTCGAAGCTCGAGAAAAGGTCCTTCTTA
CAGAGAATGAAGGTGTCGAAAATTACGAAAACCTAATGAGTACCGGTCGT
CCTACAGACAGCAAAAGAAGACAACCGTTCCGTACCTTTCCATGCGTNAT
GATAGTAAAAGTTGTAGATCGATGCGCAGTTGTTATCATTGTCGAAAAAA
TCATCATAGCAGTATTTGTAAAACCTTCAAGAAAGAGGAAGGTACGCCAG
AAGATACTCAGTCGAATTTAGCAAGCAGTTCGTGTACCGTTTTGCTACAG
ACAGCCAAAGCCAAAATCGAAAATGTCGAGAAAAATCGTTCGTCCGAAAG
TAGAATTTTCTTTGACCCTGGTAGTCAGTTGAGTTATGTTACACCCACAT
TGAGTCGAAAGCTGAATCTAAAGCAAATTGGAAAAAAGGAACTTCGTATC
AAATCGttcggaaacaacaaaaccGTCAAAACCTTACCCTTGGTCGAATT
TAACGTGAAAACTTCGAAAGGACAGGTTCCTGTACACGCCTACGTATCCG
AAATCAGTCAACCCGTTTCGAGACAGAAAACAGTCGAATGTCAAAAACgt
tttgaacatttgaaaggGTTAAAACCGGCAGATCCAAATCATGAAAAAGC
CATCGAtattgatattttgattggctcaaacttttattggaattttatAC
ACACTGAAGGTGCTGTTACTGGCAAGTCTGGCCAGCCCATTGCTTTGAGT
TCGTCGTTGGGATACGTTTTGAGTGGTCCTGctgatttaaaagaaaagat
ttcgtccggaatttttttctcacatgTTTTGAAAGCCGTCATTAGTGAAA
ATGANNNNNNNNNNNNNNNNNNNNNNGTCGTTGGGATACGTTTTGAGTGG
TCCTGctgatttaaaagaaaagatttcgtccggaatttttttctcacatg
TTTTGAAAGCCGTCATTAGTGAAAATGATCGATTATCTGAAACCGTTGAT
AAGTTCTGGGACTTGGAGAGTCTTGGGATAAGACAACAACATCATCGTTG
CTTACTGTTGGGTCAAGAACATTGAAACTTCGAGAAAACAAGATAGATAT
ATTAAGAATTTAATCTCCCAGACATTGATTGGGCATCCAATAGTATAGCT
GATCACCAATATCCCAA Coding sequence (CDS) from alignment at sc0000216:222995..225111 >TCONS_00015783 ID=TCONS_00015783|Name=TCONS_00015783|organism=Clytia hemisphaerica|type=CDS|length=1221bp|location=Sequence derived from alignment at sc0000216:222995..225111 (Clytia hemisphaerica)
aaacaaacaaaaatcgagattcctgtcccatatccttgcgtgaagctatg
tagGCCACCCTACGCTTCGCAAGCTCGCTACGGgcggcaaaaagttgaaa
aatggtTGATGTTGAGAAACTTGGCAAGAAGCGCAACGCTCTCACATCAT
GTTAACAAGTTGGTTTTGGAGTGCGAAGAATGGAACAAGGATgctaaaag
taacaaaaacGCTCTTGAAACCacttgtaaaattttaaataaaaagttac
aaattaTCATCGAGATTACGGATAACATCGTGGATGAATTAGACGATGAA
GAGCAAATGGGAATACAATATGAGAAGTGTTCCAAAGTTGAGCGTCGAGT
TGAGTCGTTGATTTTAGTCGTCAAAAGTGAATTGTCAGAAGAGAACCCAA
AAATTGCTGTTAGTGATAGTAGTGTCACAAGTACCCGAGAGAAACGGCGG
AAAGCTGATATTCGTCTACCCAAATTGAGTTTGAAACCCTACGATGGAGA
TCCGTTGAAatggaaaacatttttcgataCATTTGATTGTGCCGTTCATC
AGAGAGATGATATGACCAACGTCGAAAAAATGACATACCTCACCAGTTTA
CTTGAAGGAGAAGCGGAATCTTGCATCCAAGGTATAACATTATCTAACGA
AAATTACGATATTGcgctcaaaatttcaaaagaaaggtTCGGTGACGAAC
AGATAATTATTAGTGCGCATATGAATAAATTGTTAAACTTAGAAACAACA
TCAAACTTTATCGATATCAAAGAACTGAGAATGCTTTACAACAACATCGA
AATTCAAATTAGAAATCTTCGTGGAATCGGACTGGAGGAGAAACGTTACG
GTCATATGCTCGCACCAGTTATTATGTCGAAATTGCCACAAGAAATAAAA
TTGTTGTTGACTAGAAAGTTCGGAAAGGATGTATGGGCAATCGATAAGTT
ACTCGAAGCCTTACAACAAGAAGTCGAAGCTCGAGAAAAGGTCCTTCTTA
CAGAGAATGAAGGTGTCGAAAATTACGAAAACCTAATGAGTACCGGTCGT
CCTACAGACAGCAAAAGAAGACAACCGTTCCGTACCTTTCCATGCGTNAT
GATAGTAAAAGTTGTAGATCGATGCGCAGTTGTTATCATTGTCGAAAAAA
TCATCATAGCAGTATTTGTAAAACCTTCAAGAAAGAGGAAGGTACGCCAG
AAGATACTCAGTCGAATTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015783-exon-sc0000216-1491911889:222995..225111 | TCONS_00015783-exon-sc0000216-1491911889:222995..225111 | Clytia hemisphaerica | exon |
| TCONS_00015783-exon-sc0000216-1510915933:222995..225111 | TCONS_00015783-exon-sc0000216-1510915933:222995..225111 | Clytia hemisphaerica | exon |
| TCONS_00015783-exon-sc0000216-1575043694:222995..225111 | TCONS_00015783-exon-sc0000216-1575043694:222995..225111 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000216 | supercontig | sc0000216:222995..225111 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005312 | DUF1759 |
Blast
The following BLAST results are available for this feature:
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