TCONS_00015764 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015764
Unique NameTCONS_00015764
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length817

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015764 ID=TCONS_00015764|Name=TCONS_00015764|organism=Clytia hemisphaerica|type=transcript|length=817bp
tTAAATGCCCTGAATGTCGAGAAGAAACCAAGGTCCCAAATGGTGCATCT
GAGCTATCTACCAATTATATTGCACAAAATATCATCGACAAAGTGAAAAA
TGCTGCAAGAAAGGCCCTTTCTGTCAAGATTGTGTCGCCGAGTCTCCTGC
TTCAAACCATTGCGAAACTTGTGTTTTGAATTTATGTCAAAGATGCACAA
AGTACCATCAAGAATGTGTCAGGTTTGTAAGTCATAAAATTATTGACATA
CAAAATGTATCTAAGAAGATTTCTAGTTCGAAGCGTTACTATCCGAAACA
TAATGAgctgttgaaatatttttgccAGCAATGCAAGGTTGTCGTATGTA
ATGATTGTTGTATGATAAGTGCACAACATAAAAATCATGATATTACATTG
GTGTCGGAAGCTATCGACAAAGCCAAAGAAGAATTAAATCAAAAGCTCAA
AAAGATGAGAGAGAGTGAGTTAACAATGGTTGAATGCCTTGGAAAAGTCA
AAGAATTTCACCAAAAAATTGCTGCAGAAGAGGAAAACAATGCTAATATG
ATCAAACAAGCTTTTAATGAAATAAGATTTGTTCTTGCCAAGAAGGAAGA
AGAACTGGTAAAACAGCTTGCAACAATTAGAGCAGACAAAAAGGAGAAGC
TTAAATTGGACAGATTTTCATCAGCAACCAGCAAAGTTTCCCAATCTGTA
CAATACGTTGAATCTATCCTGAATGAAAATTGTGATGATCTAGATATCAT
ATGTGATCTCACAAAACAATTGGATGAAATCTGCAAGGAATATAGTTTGA
ATGGTACGTTTATTGTA
Run BLAST on NCBI

transcript from alignment at sc0000216:85380..90266-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015764 ID=TCONS_00015764|Name=TCONS_00015764|organism=Clytia hemisphaerica|type=transcript|length=4887bp|location=Sequence derived from alignment at sc0000216:85380..90266- (Clytia hemisphaerica)
TTAAATGCCCTGAATGTCGAGAAGAAACCAAGGTTTGTTTCAATATTTTA
CTGATCTTACTGAATATTACTTTTACTATAAGATCATAATAAAAACATCA
TAAAACATCACTGGTGTCTGAGTTATTACTAAGAATAATGAATTTGGAGT
TTGTGGTATCAAAACTCGTTGTTTCAACGATATAAGAAATTTCATGTATA
TTTTCTTTACCAAAAAAAAGGACATTGGTGAAATGAGGGCCAAAAAAGCT
CTAAAGAATCATCATTACTTCTCGCAAATTCTCAAATCTAAGTGTCCTTT
GATAGTAGTCAACAGTAATAATCTTTTATATTATTTGAGATAAAATAGTG
GAAAAATACGAAAGTACATTGGTTAAAACAAATAAATTACCGAATGTTAT
CAGTTGCTTCCAATAAATACCCTTGAACTGTCGGTACACGAAATTGTGCC
CACTAAAATGGCTGGTGTGGAAGTTGGAGAAGAGATGTGCTTCATGATAG
TTAAAAGTAATCACTTTTTATATTCTTTTAGATAAAAAAAGTGGAAAAAA
TACAAAAATATAAAATGAAAAAGTAAACAAGAAGCCCGTTGGGCGTGAAG
GCCCAGCGAAAAGTAACGTGTTGAAAACAAGCGTGCAAAACAGCAAATGT
ATGACCCCGTTGACATGGATCAAAGTGAAGACAGGAAAAAAATTTTCAAA
ATCACCGTGGTACTTCTCATTGGTTAGACGCTTGAAATTTTATTGAATGG
TCTCCTAACAACCGGGCCTACACAGGCGCAGGNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNCATTTTAAAAAGGCTCCTTTCCAGCGGCCATTTTGTTTAGAAATGA
GCCTGTGTTTTCATTTTCATTTGTTCATCTTTTTTCACAAGGTCAGCTTT
TTCCCTAAATTATGCGCGCCCATAGAAAAATATAAAAAAATTCCCCGAAT
ATTCTGCTTAGTGAGTGGGCACTTTTTAACGAATTAGGTGCACTCACATA
TACAGGGAGAAATATCCTTGCAGGCATGTTAGTTGGACCAGACCGTAGAC
CAGAAAAATGATCTTTAAAGAACTAGACGGTGGAATAGTTTTTATGGTCT
GCATATCCAAGCTAATAAAATTCATGTGGTTAATGTGAGTTAACAGTTAA
TGCGAAGATCCAGAAATGACCATTTTCACTGTTCATNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNCGACCGCCATCTTGTTTTGTTTTGAAAATTGTTTTTGAAAGAGCG
CGGAATCAGAAAATATATCTTTTGTAGCCAGTATCCGACTTTAGCAACCT
TTTCCCTCTCGAAACGGCAAAATTAAAAAGTGTGGTACTGGTTTTAAGCG
CCGTTTCTATCAAAACGGACGGACAGACAGCGGAAGGACGGACGGAAAGT
TGCAAATGAAAGGCCCTATCGCTAGCGCTGGGCCAATAACATAATACTAT
CAGCTGCTTCCAATAAATAATCCTGAACAGTCACTAGAATGGCTGGTGTG
GAAGTTGGACAAGAGTTGGAATGTTGCGTTTGTCTGGATCAATTTGTAAA
ACCAAAGCTTTTGAATTGTATGCACACTTTATGTGAGGGATGCATCGACA
AACTGATTCAGACTGGAACTATTAAATGCCCTGAATGTCGAGAATAAACC
AAGGTTTGTTTCAATATTTTACTGATCTTACTAAATATTACTTTTACCAC
TTCTATAAGATCAATCATAAAACATCACTGGTGTCTGTGATCGATACAGT
ACGGTCAGAACAATACACCTATCAACCTTAAACAGCAAGGTCATGAGGAG
ACTGGTAACAAATTTACAGAAAACTCTTTTCAACACGTTGCATTTCCAAT
CTTCAAACGAAATCAACACAGAAGCTTATTCTACCCAAGACTATATTCCA
GTTGAGGGAATCTTTGCGGTGGAGCGCAAACAATATCTAGCTGTTCCTGC
GTTTGAATTGAGCCATTCGCCTATAGATTGACATAAAAATGATGATATAA
TTATAAAAGGTGTGCACATAGAAGGTGTCGTCAGTGTTTTTTTAGCTCTA
TGTTTAAGCGATTTAGATCACAACCAATAGATTTAAATAGACTAAATTAA
GAAGACTGCTTGACAGGACAATTAGTACGAATCACTAAGGATTAGTACTC
TTACTACGACTGTAACTTTGCAATTTTGATAAGTCTCCTCTCAAGCTTGC
TGTGTCGCTTAACTGTTTATAGATGTATATAGATTACTTATCTATGTTAT
AGGTCCCAAATGGTGCATCTGAGCTATCTACCAATTATATTGCACAAAAT
ATCATCGACAAAGTGAAAAATGCTGCAAGAAAGGCCCTTTCTGTCAAGAT
TGTGTCGCCGAGTCTCCTGCTTCAAACCATTGCGAAACTTGTGTTTTGAA
TTTATGTCAAAGATGCACAAAGTACCATCAAGAATGTGTCAGGTTTGTAA
GTCATAAAATTATTGACATACAAAATGTATCTAAGAAGATTTCTAGTTCG
AAGCGTTACTATCCGAAACATAATGAGCTGTTGAAATATTTTTGCCAGCA
ATGCAAGGTTGTCGTATGTAATGATTGTTGTATGATAAGTGCACAACATA
AAAATCATGATATTACATTGGTGTCGGAAGCTATCGACAAAGCCAAAGAA
GAATTAAATCAAAAGCTCAAAAAGATGAGAGAGAGTGAGTTAACAATGGT
TGAATGCCTTGGAAAAGTCAAAGAATTTCACCAAAAAATTGCTGCAGAAG
AGGAAAACAATGCTAATATGATCAAACAAGCTTTTAATGAAATAAGATTT
GTTCTTGCCAAGAAGGAAGAAGAACTGGTAAAACAGCTTGCAACAATTAG
AGCAGACAAAAAGGAGAAGCTTAAATTGGACAGATTTTCATCAGCAACCA
GCAAAGTTTCCCAATCTGTACAATACGTTGAATCTATCCTGAATGAAAAT
TGTGATGATCTAGATATCATATGTGATCTCACAAAACAATTGGATGAAAT
CTGCAAGGAATATAGTTTGAATGGTACGTTTATTGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008804XLOC_008804Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015764-exon-sc0000216-1575043694:90235..90266TCONS_00015764-exon-sc0000216-1575043694:90235..90266Clytia hemisphaericaexon
TCONS_00015764-exon-sc0000216-1575043694:85380..86164TCONS_00015764-exon-sc0000216-1575043694:85380..86164Clytia hemisphaericaexon
TCONS_00015764-exon-sc0000216-1510915933:90235..90266TCONS_00015764-exon-sc0000216-1510915933:90235..90266Clytia hemisphaericaexon
TCONS_00015764-exon-sc0000216-1510915933:85380..86164TCONS_00015764-exon-sc0000216-1510915933:85380..86164Clytia hemisphaericaexon
TCONS_00015764-exon-sc0000216-1491911889:90235..90266TCONS_00015764-exon-sc0000216-1491911889:90235..90266Clytia hemisphaericaexon
TCONS_00015764-exon-sc0000216-1491911889:85380..86164TCONS_00015764-exon-sc0000216-1491911889:85380..86164Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000216supercontigsc0000216:85380..90266 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.75473	3.72942	1.86066	0.382692	2.17406	1.12073	1.72752	2.38824	2.36571	2.8034	1.00952	2.52835	4.13583	0	4.92683	6.23408	3.50603	4.27104	3.67887	6.74998	1.45779	1.19172	4.93743	4.2992	0.654808	2.97929	2.29615	1.95193	1.9151	2.50385
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015764 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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