TCONS_00015763 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015763
Unique NameTCONS_00015763
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length990

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015763 ID=TCONS_00015763|Name=TCONS_00015763|organism=Clytia hemisphaerica|type=transcript|length=990bp
ATCAGCTGCTTCCAATAAATAATCCTGAACAGTCACTAGAATGGCTGGTG
TGGAAGTTGGACAAGAGTTGGAATGTTGCGTTTGTCTGGATCAATTTGTA
AAACCAAAGCTTTTGAATTGTATGCACACTTTATGTGAGGGATGCATCGA
CAAACTGATTCAGACTGGAACTATTAAATGCCCTGAATGTCGAGAATAAA
CCAAGGTCCCAAATGGTGCATCTGAGCTATCTACCAATTATATTGCACAA
AATATCATCGACAAAGTGAAAAATGCTGCAAGAAAGGCCCTTTCTGTCAA
GATTGTGTCGCCGAGTCTCCTGCTTCAAACCATTGCGAAACTTGTGTTTT
GAATTTATGTCAAAGATGCACAAAGTACCATCAAGAATGTGTCAGGTTTG
TAAGTCATAAAATTATTGACATACAAAATGTATCTAAGAAGATTTCTAGT
TCGAAGCGTTACTATCCGAAACATAATGAgctgttgaaatatttttgccA
GCAATGCAAGGTTGTCGTATGTAATGATTGTTGTATGATAAGTGCACAAC
ATAAAAATCATGATATTACATTGGTGTCGGAAGCTATCGACAAAGCCAAA
GAAGAATTAAATCAAAAGCTCAAAAAGATGAGAGAGAGTGAGTTAACAAT
GGTTGAATGCCTTGGAAAAGTCAAAGAATTTCACCAAAAAATTGCTGCAG
AAGAGGAAAACAATGCTAATATGATCAAACAAGCTTTTAATGAAATAAGA
TTTGTTCTTGCCAAGAAGGAAGAAGAACTGGTAAAACAGCTTGCAACAAT
TAGAGCAGACAAAAAGGAGAAGCTTAAATTGGACAGATTTTCATCAGCAA
CCAGCAAAGTTTCCCAATCTGTACAATACGTTGAATCTATCCTGAATGAA
AATTGTGATGATCTAGATATCATATGTGATCTCACAAAACAATTGGATGA
AATCTGCAAGGAATATAGTTTGAATGGTACGTTTATTGTA
Run BLAST on NCBI

transcript from alignment at sc0000216:85380..86968-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015763 ID=TCONS_00015763|Name=TCONS_00015763|organism=Clytia hemisphaerica|type=transcript|length=1589bp|location=Sequence derived from alignment at sc0000216:85380..86968- (Clytia hemisphaerica)
ATCAGCTGCTTCCAATAAATAATCCTGAACAGTCACTAGAATGGCTGGTG
TGGAAGTTGGACAAGAGTTGGAATGTTGCGTTTGTCTGGATCAATTTGTA
AAACCAAAGCTTTTGAATTGTATGCACACTTTATGTGAGGGATGCATCGA
CAAACTGATTCAGACTGGAACTATTAAATGCCCTGAATGTCGAGAATAAA
CCAAGGTTTGTTTCAATATTTTACTGATCTTACTAAATATTACTTTTACC
ACTTCTATAAGATCAATCATAAAACATCACTGGTGTCTGTGATCGATACA
GTACGGTCAGAACAATACACCTATCAACCTTAAACAGCAAGGTCATGAGG
AGACTGGTAACAAATTTACAGAAAACTCTTTTCAACACGTTGCATTTCCA
ATCTTCAAACGAAATCAACACAGAAGCTTATTCTACCCAAGACTATATTC
CAGTTGAGGGAATCTTTGCGGTGGAGCGCAAACAATATCTAGCTGTTCCT
GCGTTTGAATTGAGCCATTCGCCTATAGATTGACATAAAAATGATGATAT
AATTATAAAAGGTGTGCACATAGAAGGTGTCGTCAGTGTTTTTTTAGCTC
TATGTTTAAGCGATTTAGATCACAACCAATAGATTTAAATAGACTAAATT
AAGAAGACTGCTTGACAGGACAATTAGTACGAATCACTAAGGATTAGTAC
TCTTACTACGACTGTAACTTTGCAATTTTGATAAGTCTCCTCTCAAGCTT
GCTGTGTCGCTTAACTGTTTATAGATGTATATAGATTACTTATCTATGTT
ATAGGTCCCAAATGGTGCATCTGAGCTATCTACCAATTATATTGCACAAA
ATATCATCGACAAAGTGAAAAATGCTGCAAGAAAGGCCCTTTCTGTCAAG
ATTGTGTCGCCGAGTCTCCTGCTTCAAACCATTGCGAAACTTGTGTTTTG
AATTTATGTCAAAGATGCACAAAGTACCATCAAGAATGTGTCAGGTTTGT
AAGTCATAAAATTATTGACATACAAAATGTATCTAAGAAGATTTCTAGTT
CGAAGCGTTACTATCCGAAACATAATGAGCTGTTGAAATATTTTTGCCAG
CAATGCAAGGTTGTCGTATGTAATGATTGTTGTATGATAAGTGCACAACA
TAAAAATCATGATATTACATTGGTGTCGGAAGCTATCGACAAAGCCAAAG
AAGAATTAAATCAAAAGCTCAAAAAGATGAGAGAGAGTGAGTTAACAATG
GTTGAATGCCTTGGAAAAGTCAAAGAATTTCACCAAAAAATTGCTGCAGA
AGAGGAAAACAATGCTAATATGATCAAACAAGCTTTTAATGAAATAAGAT
TTGTTCTTGCCAAGAAGGAAGAAGAACTGGTAAAACAGCTTGCAACAATT
AGAGCAGACAAAAAGGAGAAGCTTAAATTGGACAGATTTTCATCAGCAAC
CAGCAAAGTTTCCCAATCTGTACAATACGTTGAATCTATCCTGAATGAAA
ATTGTGATGATCTAGATATCATATGTGATCTCACAAAACAATTGGATGAA
ATCTGCAAGGAATATAGTTTGAATGGTACGTTTATTGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008804XLOC_008804Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015763-exon-sc0000216-1575043694:86764..86968TCONS_00015763-exon-sc0000216-1575043694:86764..86968Clytia hemisphaericaexon
TCONS_00015763-exon-sc0000216-1575043694:85380..86164TCONS_00015763-exon-sc0000216-1575043694:85380..86164Clytia hemisphaericaexon
TCONS_00015763-exon-sc0000216-1510915933:86764..86968TCONS_00015763-exon-sc0000216-1510915933:86764..86968Clytia hemisphaericaexon
TCONS_00015763-exon-sc0000216-1510915933:85380..86164TCONS_00015763-exon-sc0000216-1510915933:85380..86164Clytia hemisphaericaexon
TCONS_00015763-exon-sc0000216-1491911889:86764..86968TCONS_00015763-exon-sc0000216-1491911889:86764..86968Clytia hemisphaericaexon
TCONS_00015763-exon-sc0000216-1491911889:85380..86164TCONS_00015763-exon-sc0000216-1491911889:85380..86164Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000216supercontigsc0000216:85380..86968 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.32594	2.7222	1.12149	1.01089	0.700085	0	0.0711241	0	0	0.717766	0.343336	0	0.127312	1.91868	3.06366	0.612851	1.1135	4.65175e-05	1.28096	0	1.19829	1.59461	2.37404	2.41998	1.41262	0.361629	0.159674	0.306384	1.56291	0.769419
Blast
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BLAST of TCONS_00015763 vs. Swiss-Prot (Human)
Match: TRI56 (E3 ubiquitin-protein ligase TRIM56 OS=Homo sapiens GN=TRIM56 PE=1 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 4.584e-21
Identity = 30/72 (41.67%), Postives = 42/72 (58.33%), Query Frame = 2 
Query:   68 LECCVCLDQFVKPKLLNCMHTLCEGCIDKLIQTGTIKCPECRE*TKV-PNGASELSTNYIAQNIIDKVKNAA 280
            L C +CL+Q   PK L C+HT C+ C+ +L   G ++CPECRE   V P G +   TN+    ++D VK  A
Sbjct:   19 LACKICLEQLRAPKTLPCLHTYCQDCLAQLADGGRVRCPECRETVPVPPEGVASFKTNFFVNGLLDLVKARA 90

HSP 2 Score: 52.7582 bits (125), Expect = 4.584e-21
Identity = 43/195 (22.05%), Postives = 81/195 (41.54%), Query Frame = 1 
Query:  259 RQSEKCCKKGPFCQDCVAESPASNHCETCVLNLCQRCTKYHQECVRFV-SHKIIDIQNVSKKISSSKRYY------------PKH-NELLKYFCQQCKVVVCNDCCMISAQHKNHDITLVSEAIDKAKEEL-------NQKLKKMRESELTMVECLGKVKEFHQKIAAEEENNANMIKQAFNEIRFVLAKKEEEL 780
            R  +  C   P         PA+  C  C  +LCQ C   H+ C R   +H+++D+      +     +Y            P+H  E L++ CQ C  ++C +C +    H +H    ++EA+   +  L       +  L ++  +     E L +++E   ++  + E  A  +      +R +LA+K+E L
Sbjct:   95 RAGKPACALCPLVGGTSTGGPATARCLDCADDLCQACADGHR-CTRQTHTHRVVDL------VGYRAGWYDEEARERQAAQCPQHPGEALRFLCQPCSQLLCRECRLDP--HLDHPCLPLAEAVRARRPGLEGLLAGVDNNLVELEAARRVEKEALARLREQAARVGTQVEEAAEGV------LRALLAQKQEVL 274
The following BLAST results are available for this feature:
BLAST of TCONS_00015763 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRI564.584e-2141.67E3 ubiquitin-protein ligase TRIM56 OS=Homo sapiens... [more]
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