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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015699 ID=TCONS_00015699|Name=TCONS_00015699|organism=Clytia hemisphaerica|type=transcript|length=2254bpRun BLAST on NCBI protein sequence of TCONS_00015699-protein >TCONS_00015699-protein ID=TCONS_00015699-protein|Name=TCONS_00015699-protein|organism=Clytia hemisphaerica|type=polypeptide|length=679bp MVDTISVETLKAKIEEIERNNANQKVCIVGVVGRFHLFDGASSLNQLLNTRun BLAST on NCBI transcript from alignment at sc0000215:355242..369380- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00015699 ID=TCONS_00015699|Name=TCONS_00015699|organism=Clytia hemisphaerica|type=transcript|length=14139bp|location=Sequence derived from alignment at sc0000215:355242..369380- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000215:355242..369380- >TCONS_00015699 ID=TCONS_00015699|Name=TCONS_00015699|organism=Clytia hemisphaerica|type=CDS|length=30555bp|location=Sequence derived from alignment at sc0000215:355242..369380- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00015699 vs. Swiss-Prot (Human)
Match: SMG8 (Protein SMG8 OS=Homo sapiens GN=SMG8 PE=1 SV=1) HSP 1 Score: 278.87 bits (712), Expect = 3.762e-80 Identity = 186/548 (33.94%), Postives = 290/548 (52.92%), Query Frame = 2
Query: 443 IRLLYDEEQKTVFLQLNSVYDYSHLVKACRSLHQNLSMAG-------RHHYWQGQLLKHSSALLFMFSVSHIVVVTFPTPRFDLTYLRLFKVLASARYNMLHSLSQSLASVDSIPEIWRTTGRPCIPRIIFSFQI-------------PWSSAKHMNEGSIRKLQQSLQDQVHLILKKNRXXXXXXXXXXXXXXXPNQLFVHVQSPRRAHVNPVAFCINYILKNSVNMD--AIYXXXXXXXXXXXXXXXXXKSAPSPVHLSSNGVEEGNTVARDISLRDFLYKQIDYMMTVESREVPAEGR--RGTHVEAPDITLWYKVCSKVFEYF-------LGT-----TSDNNSHLKALAQTLDLDWKFSENRCHKVSPIATNAYLDSLPSHYTQSFHMAQLSHSLRVFTMNARGPAFEHYAQQLQEECNQVWWNGRHLCEATSMTGQPCVYPYHALPEGGKHDLPEDDPASNNANNLSNIKCHSSRVTTLAACNCGRTQGTREDPFDLKNANYEFYQDLEKKCCSYLLHMTFPNY----PENDPAL-KAKPAP 1963
++ Y +E K ++L L S+ D S L++ACR+L + G H +W+ Q +LL++FSV HI+++ PT FD+TY R+F+ L R +L L ++ + + W+ RPC PR++F FQ+ P K R+LQ +L+DQ++ I +K+R+L + S + LFTV + NQ FV++ P +PV ++ + + D ++ + S H+ S+ + D +LR+FL++ ++ +++ + + + GR + +H E P W SK++E LG+ TS S +K L LD+D KFSENRC K P+A +AY +LP +YT + H QL+ +LRV++ +ARGPAF YA QL E+C + W NG LCE S+T Q CV+ +H+LP+ G+ PE A+ + H+SR + ACNCGR Q R+DPFD+K ANY+FYQ LE+KCC L H+ FP + P+ PA ++ PAP
Sbjct: 138 LQAYYSQESKVLYLLLTSICDNSQLLRACRALQSGEAGGGLSLPHAEAHEFWKHQEKLQCLSLLYLFSVCHILLLVHPTCSFDITYDRVFRALDGLRQKVLPLLKTAIKDC-PVGKDWKLNCRPCPPRLLFLFQLNGALKVEPPRNQDPAHPDKPKKHSPKRRLQHALEDQIYRIFRKSRVLTNQSINCLFTVPA-NQAFVYI-VPGSQEEDPVGMLLDQLRSHCTVKDPESLLVPAPLSGPRRYQVMRQHSRQQLSFHIDSSSSSSSGQLV-DFTLREFLWQHVELVLSKKGFDD-SVGRNPQPSHFELPTYQKWISAASKLYEVAIDGKEEDLGSPTGELTSKILSSIKVLEGFLDIDTKFSENRCQKALPMAHSAYQSNLPHNYTMTVHKNQLAQALRVYSQHARGPAFHKYAMQLHEDCYKFWSNGHQLCEERSLTDQHCVHKFHSLPKSGEK--PE-------ADRNPPVLYHNSRARSTGACNCGRKQAPRDDPFDIKAANYDFYQLLEEKCCGKLDHINFPVFEPSTPDPAPAKNESSPAP 671 The following BLAST results are available for this feature:
BLAST of TCONS_00015699 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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