TCONS_00015699-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00015699-protein
Unique Name	TCONS_00015699-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	679

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00015699-protein ID=TCONS_00015699-protein|Name=TCONS_00015699-protein|organism=Clytia hemisphaerica|type=polypeptide|length=679bp
MVDTISVETLKAKIEEIERNNANQKVCIVGVVGRFHLFDGASSLNQLLNT
DVFKADKSNLKEVPLSNASGAKQVEIRLLYDEEQKTVFLQLNSVYDYSHL
VKACRSLHQNLSMAGRHHYWQGQLLKHSSALLFMFSVSHIVVVTFPTPRF
DLTYLRLFKVLASARYNMLHSLSQSLASVDSIPEIWRTTGRPCIPRIIFS
FQIPWSSAKHMNEGSIRKLQQSLQDQVHLILKKNRLLGSLSSSSLFTVSS
PNQLFVHVQSPRRAHVNPVAFCINYILKNSVNMDAIYPSSKKSESSIVSQ
PSPVKSAPSPVHLSSNGVEEGNTVARDISLRDFLYKQIDYMMTVESREVP
AEGRRGTHVEAPDITLWYKVCSKVFEYFLGTTSDNNSHLKALAQTLDLDW
KFSENRCHKVSPIATNAYLDSLPSHYTQSFHMAQLSHSLRVFTMNARGPA
FEHYAQQLQEECNQVWWNGRHLCEATSMTGQPCVYPYHALPEGGKHDLPE
DDPASNNANNLSNIKCHSSRVTTLAACNCGRTQGTREDPFDLKNANYEFY
QDLEKKCCSYLLHMTFPNYPENDPALKAKPAPTLQKRLESHKITILGRQS
KSSLDSTSQDQLTSQSKTQSQHEMKNTSQHKTQESLMSPDAAVANSSLSY
TNTQEGETGSQIDGITQSTKNMTLHEKGE

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_008758	XLOC_008758	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00015699	TCONS_00015699	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR019354	Smg8/Smg9

Vocabulary: **Biological Process**
Term	Definition
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 7..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 294..317
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 593..679
IPR019354	Smg8/Smg9	PFAM	PF10220	Smg8_Smg9	coord: 22..648 e-value: 5.7E-129 score: 431.8

Blast

[Close]

BLAST of TCONS_00015699-protein vs. Swiss-Prot (Human)
Match: SMG8 (Protein SMG8 OS=Homo sapiens GN=SMG8 PE=1 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 1.650e-89
Identity = 189/551 (34.30%), Postives = 297/551 (53.90%), Query Frame = 0

Query:   76 IRLLYDEEQKTVFLQLNSVYDYSHLVKACRSLHQNLSMAG-------RHHYWQGQLLKHSSALLFMFSVSHIVVVTFPTPRFDLTYLRLFKVLASARYNMLHSLSQSLASVDSIPEIWRTTGRPCIPRIIFSFQI-------------PWSSAKHMNEGSIRKLQQSLQDQVHLILKKNRLLGSLSSSSLFTVSSPNQLFVHVQSPRRAHVNPVAFCINYI-----LKNSVNMDAIYPSSKKSESSIVSQPSPVKSAPSPVHLSSNGVEEGNTVARDISLRDFLYKQIDYMMTVESREVPAEGR--RGTHVEAPDITLWYKVCSKVFEYF-------LGT-----TSDNNSHLKALAQTLDLDWKFSENRCHKVSPIATNAYLDSLPSHYTQSFHMAQLSHSLRVFTMNARGPAFEHYAQQLQEECNQVWWNGRHLCEATSMTGQPCVYPYHALPEGGKHDLPEDDPASNNANNLSNIKCHSSRVTTLAACNCGRTQGTREDPFDLKNANYEFYQDLEKKCCSYLLHMTFPNY----PENDPAL-KAKPAP 582
            ++  Y +E K ++L L S+ D S L++ACR+L    +  G        H +W+ Q      +LL++FSV HI+++  PT  FD+TY R+F+ L   R  +L  L  ++     + + W+   RPC PR++F FQ+             P    K       R+LQ +L+DQ++ I +K+R+L + S + LFTV + NQ FV++  P     +PV   ++ +     +K+  ++    P S      ++ Q S  + +    H+ S+       +  D +LR+FL++ ++ +++ +  +  + GR  + +H E P    W    SK++E         LG+     TS   S +K L   LD+D KFSENRC K  P+A +AY  +LP +YT + H  QL+ +LRV++ +ARGPAF  YA QL E+C + W NG  LCE  S+T Q CV+ +H+LP+ G+   PE       A+    +  H+SR  +  ACNCGR Q  R+DPFD+K ANY+FYQ LE+KCC  L H+ FP +    P+  PA  ++ PAP
Sbjct:  138 LQAYYSQESKVLYLLLTSICDNSQLLRACRALQSGEAGGGLSLPHAEAHEFWKHQEKLQCLSLLYLFSVCHILLLVHPTCSFDITYDRVFRALDGLRQKVLPLLKTAIKDC-PVGKDWKLNCRPCPPRLLFLFQLNGALKVEPPRNQDPAHPDKPKKHSPKRRLQHALEDQIYRIFRKSRVLTNQSINCLFTVPA-NQAFVYI-VPGSQEEDPVGMLLDQLRSHCTVKDPESLLVPAPLSGPRRYQVMRQHSRQQLS---FHIDSSSSSSSGQLV-DFTLREFLWQHVELVLSKKGFDD-SVGRNPQPSHFELPTYQKWISAASKLYEVAIDGKEEDLGSPTGELTSKILSSIKVLEGFLDIDTKFSENRCQKALPMAHSAYQSNLPHNYTMTVHKNQLAQALRVYSQHARGPAFHKYAMQLHEDCYKFWSNGHQLCEERSLTDQHCVHKFHSLPKSGEK--PE-------ADRNPPVLYHNSRARSTGACNCGRKQAPRDDPFDIKAANYDFYQLLEEKCCGKLDHINFPVFEPSTPDPAPAKNESSPAP 671

The following BLAST results are available for this feature:

BLAST of TCONS_00015699-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00015699-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SMG8	1.650e-89	34.30	Protein SMG8 OS=Homo sapiens GN=SMG8 PE=1 SV=1	[more]

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TCONS_00015699-protein (polypeptide) - C. hemisphaerica