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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015674 ID=TCONS_00015674|Name=TCONS_00015674|organism=Clytia hemisphaerica|type=transcript|length=3393bpRun BLAST on NCBI protein sequence of TCONS_00015674-protein >TCONS_00015674-protein ID=TCONS_00015674-protein|Name=TCONS_00015674-protein|organism=Clytia hemisphaerica|type=polypeptide|length=927bp MFFSMDAAVNQPERVPLSKSFNPSTRLGDEIKAEEETKKKKKDYTPIIHSRun BLAST on NCBI transcript from alignment at sc0000215:153181..160387- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00015674 ID=TCONS_00015674|Name=TCONS_00015674|organism=Clytia hemisphaerica|type=transcript|length=7207bp|location=Sequence derived from alignment at sc0000215:153181..160387- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000215:153181..160387- >TCONS_00015674 ID=TCONS_00015674|Name=TCONS_00015674|organism=Clytia hemisphaerica|type=CDS|length=25056bp|location=Sequence derived from alignment at sc0000215:153181..160387- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00015674 vs. Swiss-Prot (Human)
Match: ANK1 (Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3) HSP 1 Score: 98.9821 bits (245), Expect = 1.095e-20 Identity = 59/145 (40.69%), Postives = 84/145 (57.93%), Query Frame = 2
Query: 839 LGFVESLIKSGADVNATDRAGQTVLHEVSKAWHTDVAKFLLDKKAEINKGDRFGRTPLHLSAAVGYVEMVEFLIANGANINQKTKGEKQTPIHYAARNNAVATLKVLLRLGASITDRDYKARTPLFVAAENGRQEAARMLLEAGA 1273
L V++L++ GA N ++ +T LH ++A HT+VAK+LL KA++N + +TPLH +A +G+ MV+ L+ N AN N T TP+H AAR V T+ LL AS K TPL VAA+ G+ A +LLE A
Sbjct: 417 LPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTA-GHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA 560 HSP 2 Score: 88.1965 bits (217), Expect = 2.364e-17 Identity = 54/146 (36.99%), Postives = 81/146 (55.48%), Query Frame = 2
Query: 836 DLGFVESLIKSGADVNATDRAGQTVLHEVSKAWHTDVAKFLLDKKAEINKGDRFGRTPLHLSAAVGYVEMVEFLIANGANINQKTKGEKQTPIHYAARNNAVATLKVLLRLGASITDRDYKARTPLFVAAENGRQEAARMLLEAGA 1273
+L + L+ GA VN T + G T LH S+ + + + LLD+ A+I + TPLH +A G+V + E L+ +GA I KTK +PIH AA+ + + +++LL+ A I D TPL VAA G A++LL+ GA
Sbjct: 218 NLNVAQLLLNRGASVNFTPQNGITPLHIASRRGNVIMVRLLLDRGAQIETKTKDELTPLHCAARNGHVRISEILLDHGAPIQAKTKN-GLSPIHMAAQGDHLDCVRLLLQYDAEIDDITLDHLTPLHVAAHCGHHRVAKVLLDKGA 362 HSP 3 Score: 86.2705 bits (212), Expect = 8.480e-17 Identity = 55/156 (35.26%), Postives = 80/156 (51.28%), Query Frame = 2
Query: 845 FVESLIKSGADVNATDRAGQTVLHEVSKAWHTDVAKFLLDKKAEINKGDRFGRTPLHLSAAVGYVEMVEFLIANGANINQKTKGEKQTPIHYAARNNAVATLKVLLRLGASITDRDYKARTPLFVAAENGRQEAARMLLEAGAPAAVYDDEGTSCL 1312
+E L+K+GA ++A +G T LH S H + K LL + A N + TPLH++A G+ E+ ++L+ N A +N K K + QTP+H AAR +K+LL A+ TPL +AA G E LLE A A +G + L
Sbjct: 386 VMELLLKTGASIDAVTESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAK-DDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPL 540 The following BLAST results are available for this feature:
BLAST of TCONS_00015674 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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