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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015668 ID=TCONS_00015668|Name=TCONS_00015668|organism=Clytia hemisphaerica|type=transcript|length=1465bpRun BLAST on NCBI protein sequence of TCONS_00015668-protein >TCONS_00015668-protein ID=TCONS_00015668-protein|Name=TCONS_00015668-protein|organism=Clytia hemisphaerica|type=polypeptide|length=314bp MGGGGKSVNYYEILGCTQESSQKEILKAYRKKALTCHPDKNPDNPKAADLRun BLAST on NCBI transcript from alignment at sc0000215:66290..96852- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00015668 ID=TCONS_00015668|Name=TCONS_00015668|organism=Clytia hemisphaerica|type=transcript|length=30563bp|location=Sequence derived from alignment at sc0000215:66290..96852- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000215:66290..96852- >TCONS_00015668 ID=TCONS_00015668|Name=TCONS_00015668|organism=Clytia hemisphaerica|type=CDS|length=8505bp|location=Sequence derived from alignment at sc0000215:66290..96852- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00015668 vs. Swiss-Prot (Human)
Match: DJC17 (DnaJ homolog subfamily C member 17 OS=Homo sapiens GN=DNAJC17 PE=1 SV=1) HSP 1 Score: 178.718 bits (452), Expect = 3.216e-51 Identity = 127/308 (41.23%), Postives = 193/308 (62.66%), Query Frame = 3
Query: 69 VNYYEILGCTQESSQKEILKAYRKKALTCHPDKNPDNPKAADLFIELSEAFKILTDSEAKAAFDKVLAAKEKARLRTKAFDVKRKKFKEDLEKRENAAQQEKEIDID---AAEKLAAEIKRLREEGSRXXXXXXXXXXXXXXXD----AKNKATTTNEDXXXXXXXXXXXXXTDHDNGGYDENILKEIFQQFGVVTAVVISVKKNGLAIIEYAKPSHARVAIEFAKGLEDNPLTVVTWLVEPSASQETPCEEKVADKKETTIPEPQQPLEPQRVLNPSYEEDFEAMVLKRMKQAEERKRLNQELQDEE 971
++ Y +LG ++++ KE+ KAYR+KAL+CHPDKNPDNP+AA+LF +LS+A ++LTD+ A+AA+DKV AK++A RT+ D KRKK K DLE RE AQ ++ + + + L EI+RLREEGSR L+EQQ +I +Q++++ + KA T PKLK+KWK KK D GGY +++L + Q++G V +V+S KK G A++E+A A +A++ GL DNPL ++WL + + + L VL+ E D+E++V+ RM+QA ER++L +Q E+
Sbjct: 10 MDLYALLGIEEKAADKEVKKAYRQKALSCHPDKNPDNPRAAELFHQLSQALEVLTDAAARAAYDKVRKAKKQAAERTQKLDEKRKKVKLDLEARERQAQAQESEEEEESRSTRTLEQEIERLREEGSRQLEEQQRLIREQIRQERDQRLRGKAENTEGQGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVGLVDNPLK-ISWL---------------EGQPQDAVGRSHSGLSKGSVLS---ERDYESLVMMRMRQAAERQQLIARMQQED 298 The following BLAST results are available for this feature:
BLAST of TCONS_00015668 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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