TCONS_00015668-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00015668-protein
Unique NameTCONS_00015668-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length314

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00015668-protein ID=TCONS_00015668-protein|Name=TCONS_00015668-protein|organism=Clytia hemisphaerica|type=polypeptide|length=314bp
MGGGGKSVNYYEILGCTQESSQKEILKAYRKKALTCHPDKNPDNPKAADL
FIELSEAFKILTDSEAKAAFDKVLAAKEKARLRTKAFDVKRKKFKEDLEK
RENAAQQEKEIDIDAAEKLAAEIKRLREEGSRLLKEQQEIIEKQLKEDAK
NKATTTNEDLLPKLKVKWKAKKTDHDNGGYDENILKEIFQQFGVVTAVVI
SVKKNGLAIIEYAKPSHARVAIEFAKGLEDNPLTVVTWLVEPSASQETPC
EEKVADKKETTIPEPQQPLEPQRVLNPSYEEDFEAMVLKRMKQAEERKRL
NQELQDEEAFTSAT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_008743XLOC_008743Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00015668TCONS_00015668Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001623DnaJ_domain
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 91..143
NoneNo IPR availableGENE3D3.30.70.330coord: 154..311
e-value: 4.1E-7
score: 29.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 246..276
IPR001623DnaJ domainPRINTSPR00625JDOMAINcoord: 11..29
score: 43.8
coord: 29..44
score: 53.56
coord: 46..66
score: 35.15
IPR001623DnaJ domainSMARTSM00271dnaj_3coord: 8..66
e-value: 2.0E-22
score: 90.5
IPR001623DnaJ domainGENE3D1.10.287.110coord: 4..90
e-value: 1.5E-23
score: 82.4
IPR001623DnaJ domainPFAMPF00226DnaJcoord: 9..71
e-value: 2.8E-21
score: 75.3
IPR001623DnaJ domainPROSITEPS50076DNAJ_2coord: 9..74
score: 17.193
IPR001623DnaJ domainCDDcd06257DnaJcoord: 9..63
e-value: 3.40373E-20
score: 81.0525
IPR001623DnaJ domainSUPERFAMILY46565Chaperone J-domaincoord: 7..79
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 180..223
e-value: 1.7E-6
score: 27.7
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 180..231

Blast
[Close]
BLAST of TCONS_00015668-protein vs. Swiss-Prot (Human)
Match: DJC17 (DnaJ homolog subfamily C member 17 OS=Homo sapiens GN=DNAJC17 PE=1 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 6.533e-62
Identity = 127/308 (41.23%), Postives = 193/308 (62.66%), Query Frame = 0 
Query:    8 VNYYEILGCTQESSQKEILKAYRKKALTCHPDKNPDNPKAADLFIELSEAFKILTDSEAKAAFDKVLAAKEKARLRTKAFDVKRKKFKEDLEKRENAAQQEKEIDID---AAEKLAAEIKRLREEGSRLLKEQQEIIEKQLKED----AKNKATTTNEDLLPKLKVKWKAKKTDHDNGGYDENILKEIFQQFGVVTAVVISVKKNGLAIIEYAKPSHARVAIEFAKGLEDNPLTVVTWLVEPSASQETPCEEKVADKKETTIPEPQQPLEPQRVLNPSYEEDFEAMVLKRMKQAEERKRLNQELQDEE 308
            ++ Y +LG  ++++ KE+ KAYR+KAL+CHPDKNPDNP+AA+LF +LS+A ++LTD+ A+AA+DKV  AK++A  RT+  D KRKK K DLE RE  AQ ++  + +   +   L  EI+RLREEGSR L+EQQ +I +Q++++     + KA  T     PKLK+KWK KK D   GGY +++L  + Q++G V  +V+S KK G A++E+A    A +A++   GL DNPL  ++WL                 + +  +      L    VL+   E D+E++V+ RM+QA ER++L   +Q E+
Sbjct:   10 MDLYALLGIEEKAADKEVKKAYRQKALSCHPDKNPDNPRAAELFHQLSQALEVLTDAAARAAYDKVRKAKKQAAERTQKLDEKRKKVKLDLEARERQAQAQESEEEEESRSTRTLEQEIERLREEGSRQLEEQQRLIREQIRQERDQRLRGKAENTEGQGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVGLVDNPLK-ISWL---------------EGQPQDAVGRSHSGLSKGSVLS---ERDYESLVMMRMRQAAERQQLIARMQQED 298
The following BLAST results are available for this feature:
BLAST of TCONS_00015668-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DJC176.533e-6241.23DnaJ homolog subfamily C member 17 OS=Homo sapiens... [more]
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