TCONS_00015648 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015648
Unique NameTCONS_00015648
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1221

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015648 ID=TCONS_00015648|Name=TCONS_00015648|organism=Clytia hemisphaerica|type=transcript|length=1221bp
ATTCAAGTATAAAAGCAgaatcttttgatttaaaatttggtGGGGTTCAA
ACTTTGAAACTTCACAGATCCAAGACGAAACATGACACGACTGGTCTTCT
TAGTTTTGTTATTACCATGTTGCTGCTTCTGCGCAGAAACAGAAATCACC
GATAAACACACATTATCCACCACGTCTATGCGAAATAAGAAAGATGCGAC
GGATCCACAGTTGCTGTTCTGGCCACGTGTTGGAAAAAGAGAATCGAACG
ATTTCAACGAGCTTGATATCGTTGCTGGTTCTAATGAAGCAGGAAGTAGA
AGACAGGCTGTGGACTTTGAAAAGCGTTTTCCACTCCATCCAATCAATAT
TGATGAAGCTCAAAACCGGCTTAACACGAAGGAGTATAGGCTGAGAAAAA
TCTCGCCCTTCCTTCACCGAAAAACAAGTTTCTACCTGCCGTTCACGCAA
CACAATTTAACACCTTTTCTTCATAAAAGAAGTCCGGAAGATTACTCACA
AATGCCGTTTCTACACAAAAGAGAGCTTCCATTGAGATTCTTGACCCGGA
GACGTCAGATGCCGTTTTTACATAAAAGGGATGACACGCCGTTTCTGCAT
AAAAGGGATAACACACCGTTTCTATATAGAAGGGATGACACGCCGTTTCT
ACATAAAAGACGTGCTACACCGTTTTTACATAAAAGACGTAACACGCCGT
TTTTACATAAACAAAGTATGTCAACTTATGCTATGTAAATGACATTTTAG
AAATATGAATATGACTTTTAAACAGTATTTAGCGGGAAACTTGATATTTG
GACCTCGCCATCGATGAGGAAAAGACTCAAGTTTTAGACCTTTAGAACCC
TTAGAAAAATTCACCACTGAGTTTCTGTACATTTCCAATTTAGGACCAAA
TTTTCTAAATCTTGACCATTTGAAGAGCAAAAGCTTTGGATTTTTGTGAT
ATGGGACCTTTTATGTGTAAAGAGGTGTGGAAAGGAATCTCTCACATACA
AAGTACCTATCTAAATTCTAAGTGCTCTACTTGTCTTGGGGCTTCAATAA
AGTTGCGTATAGTGCGCATAGTCTTCTAAAGACATTTTAAGGAATATGAG
GTTTATAACAGTATACTAAGGTAAATGtacaaaaattattcaaaaaattt
tcatttaaaattcatgaatcattgaaaattttatttttcttaatttgaaA
TATCACAAATCAACAAGAGGA
Run BLAST on NCBI

transcript from alignment at sc0000215:38140..39913+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015648 ID=TCONS_00015648|Name=TCONS_00015648|organism=Clytia hemisphaerica|type=transcript|length=1774bp|location=Sequence derived from alignment at sc0000215:38140..39913+ (Clytia hemisphaerica)
ATTCAAGTATAAAAGCAgaatcttttgatttaaaatttggtGGGGTTCAA
ACTTTGAAACTTCACAGGTATTTACCAAACCACAGATAGTACAAGAATTT
GGGCAATAGTCTCTTTTTCAACCTTTTAAGATCAGGGCTCCAAAACcacc
aaatttggaaaatgccTTTTTTAACAATCTTTAAATGAGCCCCCCGCCGA
GTGGTTTCCGTAATGGCGTGATTGGCGTTTTTTCAAGTTCAtgatttcgt
gatttaagattttaaagtgaCGAGACTGTATGACCGGAGGAACCATCCAA
TgtgatcgtgatagaaaggAAAATTGACTtgtgattgcgtgatttgaaag
TGACTGGGGGCCTCTTAAATATGTCAtgagatattttttgaatttgctTC
TAGCAGGTTCCAAAATCAACATTTCATTACGAATCATCATGTTACAATGC
GGTTCCAATTATCATCATCCTCCTGCTCCTCTCTGACTGATTTATAACAT
AAAGGAACGCTACTTTATTCGATTTGTTACCTTCTAGAGGTGGAATGTGA
CAAATCTAATGAAACAGAATCTTAATTTTTCAGCCTGAAATCATAGCGTG
CCTTTTTAATTTGCTTTTAGATCCAAGACGAAACATGACACGACTGGTCT
TCTTAGTTTTGTTATTACCATGTTGCTGCTTCTGCGCAGAAACAGAAATC
ACCGATAAACACACATTATCCACCACGTCTATGCGAAATAAGAAAGATGC
GACGGATCCACAGTTGCTGTTCTGGCCACGTGTTGGAAAAAGAGAATCGA
ACGATTTCAACGAGCTTGATATCGTTGCTGGTTCTAATGAAGCAGGAAGT
AGAAGACAGGCTGTGGACTTTGAAAAGCGTTTTCCACTCCATCCAATCAA
TATTGATGAAGCTCAAAACCGGCTTAACACGAAGGAGTATAGGCTGAGAA
AAATCTCGCCCTTCCTTCACCGAAAAACAAGTTTCTACCTGCCGTTCACG
CAACACAATTTAACACCTTTTCTTCATAAAAGAAGTCCGGAAGATTACTC
ACAAATGCCGTTTCTACACAAAAGAGAGCTTCCATTGAGATTCTTGACCC
GGAGACGTCAGATGCCGTTTTTACATAAAAGGGATGACACGCCGTTTCTG
CATAAAAGGGATAACACACCGTTTCTATATAGAAGGGATGACACGCCGTT
TCTACATAAAAGACGTGCTACACCGTTTTTACATAAAAGACGTAACACGC
CGTTTTTACATAAACAAAGTATGTCAACTTATGCTATGTAAATGACATTT
TAGAAATATGAATATGACTTTTAAACAGTATTTAGCGGGAAACTTGATAT
TTGGACCTCGCCATCGATGAGGAAAAGACTCAAGTTTTAGACCTTTAGAA
CCCTTAGAAAAATTCACCACTGAGTTTCTGTACATTTCCAATTTAGGACC
AAATTTTCTAAATCTTGACCATTTGAAGAGCAAAAGCTTTGGATTTTTGT
GATATGGGACCTTTTATGTGTAAAGAGGTGTGGAAAGGAATCTCTCACAT
ACAAAGTACCTATCTAAATTCTAAGTGCTCTACTTGTCTTGGGGCTTCAA
TAAAGTTGCGTATAGTGCGCATAGTCTTCTAAAGACATTTTAAGGAATAT
GAGGTTTATAACAGTATACTAAGGTAAATGtacaaaaattattcaaaaaa
ttttcatttaaaattcatgaatcattgaaaattttatttttcttaatttg
aaATATCACAAATCAACAAGAGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008730XLOC_008730Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015648-exon-sc0000215-1491911889:38140..38206TCONS_00015648-exon-sc0000215-1491911889:38140..38206Clytia hemisphaericaexon
TCONS_00015648-exon-sc0000215-1510915933:38140..38206TCONS_00015648-exon-sc0000215-1510915933:38140..38206Clytia hemisphaericaexon
TCONS_00015648-exon-sc0000215-1575043694:38140..38206TCONS_00015648-exon-sc0000215-1575043694:38140..38206Clytia hemisphaericaexon
TCONS_00015648-exon-sc0000215-1491911889:38760..39913TCONS_00015648-exon-sc0000215-1491911889:38760..39913Clytia hemisphaericaexon
TCONS_00015648-exon-sc0000215-1510915933:38760..39913TCONS_00015648-exon-sc0000215-1510915933:38760..39913Clytia hemisphaericaexon
TCONS_00015648-exon-sc0000215-1575043694:38760..39913TCONS_00015648-exon-sc0000215-1575043694:38760..39913Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000215supercontigsc0000215:38140..39913 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	2.39737	2.90464	0	0	3.60318	3.973	5.67935	2.7787	1.26402	1.23602	0.461857	0.423511	2.67829	3.05556	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015648 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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