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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015640 ID=TCONS_00015640|Name=TCONS_00015640|organism=Clytia hemisphaerica|type=transcript|length=3132bpRun BLAST on NCBI transcript from alignment at sc0000214:409006..434754- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00015640 ID=TCONS_00015640|Name=TCONS_00015640|organism=Clytia hemisphaerica|type=transcript|length=25749bp|location=Sequence derived from alignment at sc0000214:409006..434754- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00015640 vs. Swiss-Prot (Human)
Match: MRP4 (Multidrug resistance-associated protein 4 OS=Homo sapiens GN=ABCC4 PE=1 SV=3) HSP 1 Score: 568.155 bits (1463), Expect = 0.000e+0 Identity = 351/999 (35.14%), Postives = 570/999 (57.06%), Query Frame = 2
Query: 152 NPRKNVNLVSRFLFWYLNPKFWKGFKRKIVKEDVLKISKDDSVQYLTSQLDSSWKNEVQASERSGRRPNFFHALVKAVWPRMLAITCFLLILDLSKISQAYLLQRLLE--EMAKPL-FWEHKEVYYWAGGLSASLILTWMLLENSFLKAELLGVNMKSAVLGMLYKKTLTICEPSINTITSGHVISLFSTDSQKIQEMFGFVYFIVITPVLLGVSTYLLWRELGVSCXXXXXXXXXXXXXXXXXGRFFGYMRVRTVKKTDKRMSLMSEILASMQITKIFTWEDSYSTLVKNVRREESSQVMNAQLMRAFNNALYGCSPYLVAMATFVTFYHHGDGHLTVAMVAGSMSIFFAIRMEVTYFFGLGVQGWFEGKSSCKRIQKFLMLKEMKTLRSPPLPVNTPSSLSVVCDRLYASWNKGDKEPAVKDVSFTANRKNNLXXXXXXXXXXKTSLLMSLLNELIVHRGSVTINGRVAYSAQQPWVFAGTIRQNILFGKPFKKEFYENVIMACALAPDLMSFDEGDQTQVGEHGATLSGGQRTRISLARAIYSEADVYLLDDPLSAVDNKVARHIFENCILGLLKNKITILVTHQIQFLEHSTNIVYLQNGASSVEGSLQDLTNRGVNFVSLLHPQTDDGFSDGDSAIDTEDGWHYSLDEETPLRPPSAHDLHGISLNVDNCESARTSKRSFK-SAHSSADSFETFEGNDDDETIRGAIPYKIYYRYFKEGIGALSTISLFVAVITGQVLLTLADIWLAEWAFVQERKAQNKTYESKLYIQNNDDNNMY--IFVGLSCGAVIGNXXXXXXXXXXXXKCSRRLHNQMFDAVLKAPLYFFETNTSGKILNRFSKDIYAMDEELPWTFNDMIQLSFLTLAIFIMNCLSVPYXXXXXXXXXXFFVGFRHFFVKTSRDLRRLEASSRTPFYNHVISTLDGLSTIRSFALHDVMMEEFNACADYQTEGWLMYLYSMKWFGQRLNFVVTLFSICAIFAPIVLARYIELDEGLV 3130
NP ++ NL SR FW+LNP F G KR++ ++D+ + +D Q+L +L W EV +E ++P+ A++K W L + F LI + +K+ Q L +++ E P+ Y +A L+ ++ +L F + G+ ++ A+ M+Y+K L + ++ T+G +++L S D K ++ F++F+ P+ T LLW E+G+SCLAG+ VLI+L+P+ S G+ F +R +T TD R+ M+E++ ++I K++ WE S+S L+ N+R++E S+++ + +R N A + + ++ TF T+ G +T + V +++++ A+R+ VT FF ++ E S +RIQ FL+L E+ R+ LP + + V A W+K + P ++ +SFT R L+ VVG VG GK+SLL ++L EL G V+++GR+AY +QQPWVF+GT+R NILFGK ++KE YE VI ACAL DL ++GD T +G+ G TLSGGQ+ R++LARA+Y +AD+YLLDDPLSAVD +V+RH+FE CI +L KITILVTHQ+Q+L+ ++ I+ L++G +G+ + G++F SLL ++ E+ P+ P L + + + S ++S+ S K A S D+ ++ G + ++ Y YF+ G + I L + QV L D WL+ WA ++ N T + D N Y I+ GL+ V+ + R LL F LV S+ LHN+MF+++LKAP+ FF+ N G+ILNRFSKDI +D+ LP TF D IQ + + + +P++ I L+P+ F+ R +F++TSRD++RLE+++R+P ++H+ S+L GL TIR++ + E F+A D +E W ++L + +WF RL+ + +F I F ++LA+ LD G V
Sbjct: 11 NPLQDANLCSRVFFWWLNPLFKIGHKRRLEEDDMYSVLPEDRSQHLGEELQGFWDKEVLRAENDAQKPSLTRAIIKCYWKSYLVLGIFTLIEESAKVIQPIFLGKIINYFENYDPMDSVALNTAYAYATVLTFCTLILAILHHLYFYHVQCAGMRLRVAMCHMIYRKALRLSNMAMGKTTTGQIVNLLSNDVNKFDQVTVFLHFLWAGPLQAIAVTALLWMEIGISCLAGMAVLIILLPLQSCFGKLFSSLRSKTATFTDARIRTMNEVITGIRIIKMYAWEKSFSNLITNLRKKEISKILRSSCLRGMNLASFFSASKIIVFVTFTTYVLLGSV-ITASRVFVAVTLYGAVRLTVTLFFPSAIERVSEAIVSIRRIQTFLLLDEISQ-RNRQLPSDGKKMVHV--QDFTAFWDKASETPTLQGLSFTV-RPGELLAVVGPVGAGKSSLLSAVLGELAPSHGLVSVHGRIAYVSQQPWVFSGTLRSNILFGKKYEKERYEKVIKACALKKDLQLLEDGDLTVIGDRGTTLSGGQKARVNLARAVYQDADIYLLDDPLSAVDAEVSRHLFELCICQILHEKITILVTHQLQYLKAASQILILKDGKMVQKGTYTEFLKSGIDFGSLLKKDNEES-------------------EQPPV--PGTPTLRNRTFSESSVWSQQSSRPSLKDGALESQDTENVPVTLSEENRSEGKVGFQAYKNYFRAGAHWIVFIFLILLNTAAQVAYVLQDWWLSYWA--NKQSMLNVTVNGGGNVTEKLDLNWYLGIYSGLTVATVLFGIARSLLVFYVLVNSSQTLHNKMFESILKAPVLFFDRNPIGRILNRFSKDIGHLDDLLPLTFLDFIQTLLQVVGVVSVAVAVIPWIAIPLVPLGIIFIFLRRYFLETSRDVKRLESTTRSPVFSHLSSSLQGLWTIRAYKAEERCQELFDAHQDLHSEAWFLFLTTSRWFAVRLDAICAMFVIIVAFGSLILAK--TLDAGQV 979 The following BLAST results are available for this feature:
BLAST of TCONS_00015640 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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