TCONS_00015621 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015621
Unique NameTCONS_00015621
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2454

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015621 ID=TCONS_00015621|Name=TCONS_00015621|organism=Clytia hemisphaerica|type=transcript|length=2454bp
aaaacaatggGTGGGTCAAAGAAAAGAGAATCAAACAATAACAACAGAAA
GAAACAACAATCATTAGCACACAAAGATCACAGAACAAACAAAGCATCAC
ATCGCGCTGGGAGACATCAACATTTTGAAGAACATGCTAATTCATTACCA
TCTGAAGAAGATTTGCTTCATAATAATGACGATGATGAATCTGCAGGACA
ATCCATCCCAATTCATCTTGCTATGTGGGATATGGGTCATTGTGATCCTA
AGAGATGTACAGGTCGTAAGCTTCAGCGGTATGGCTTGCTTACAGCTTTA
AGATTGAACCAACGATTTAATGGAATCGTCCTCAGTCCGATCGGTACAAA
ATACGTCTCAAAAGCTGACCGACATCTAGTTCTTCAACATGGGTCAGCGG
TTATTGATTGTTCTTGGGCTCAACTAGACCAAACTCCTTTCAACAAGATG
AAATGCTCCAACCCCCGTCTTTTACCACACATGTTGGCAGCCAACCCGGT
GAATTATGGGAAACCTTTCAAATTATCGTGTGTCGAGGCTTTCGCTGCTA
CTCTATACCTTGTTGGTTTCAAGGAGTATGGTGAACAGATCTTATCACGT
TTCAAATGGGGTCTTCACTTTTTCGAACTTAACAGAGAATTGTTGGACTT
ATACGAAGGTTGTGATACAGAAGCGGAAGTGCGGCAAGTGGAAAGAGACT
GGTTGGAAAAATGCGAAGCGGAATATCAAGCCGTCAAAAAAACTGATATG
ATGAGCATCGATATGGATTTAGAAGGAGGCTTCAATCCAAACAGAAGTGC
AAACCTTCTCACAGGAAAAAGAAACACCAGAGATTTTCCATCAAGCAgtg
atgaaattgaaagtgaagaagaagatTCAACGGAGAGCGGAGAAGAGGAA
GAATACGAGACTGATCGATTCGGTAACACTGTCCGAAAGATAAATCCTGT
CCGAGAAAATGATATATCAGTGAATGACGATAGCGTAATTCGCAAAGACA
TTTTATCGAAAGATTTAAATTTGAATTATGGTATAGACACTGATAATACC
GACCATAATATTCCGGACGAAATTAAAGATATTTCGGACAAAAATAAAGA
TGTTTCGGACATTGAATGTGTTATTTCGGACAGTCAAAAAGACGTCTTAA
CGACGGGTCAACTTGAGGTATCATCTGTGCAAGAAAAGGTATCGAATATT
GATCTTAATTCATCATCTACTAATAAGacgtgagatttttttttttgata
ctttatgagggagaagattttgatttttaaaaagtcactggtaattttct
attttccttCTTATGAACTTCAAAAAGCTGGAAAAGAGCTTTTAAAAAGC
ATTCCATAGAGCTCTTTCAAATAGAATCATATTTTATGGTGATGGAGGAT
GTGTTTTTAATGAACTACACCCCTGTGACATCGCAAATATCACCCCATTG
ACAACGAGTTTTTCTAGATATCCCTGTCCTGGACTATGAACTGTTGACCA
AATTACAAGAATTCAACTGTCCTCTTGAATTGGAAATGAGTATTGAAAGT
ATATTTTATCGATTTGTCGTTTGCTTCTCGTTAAAAATCTTTTATACGCA
ACATATATTGCATCTTCATCGTTATTTACATACACACTGATGAAAGCtca
ccaaaatattttctacCCAAGCtttcaataaataaatattaacaTTACAT
TTTTCCACTAATAGATATATGATACCTAGATATTATCTACAGTTAAATGA
CTAAATTTTGTACAAAATATATCTTCAATAAAACTTTAATTCAGGTAATA
AATAACCTTCCATATATTAACCGGTTTGGAagttttttgaagctttcaCA
TTGCTATATGTGGTGATTTTCGACACATTTTTGAGTCTTTGCAGCTGATT
CTTTCTCTTGCGTGTGTATTTGTATCATACGTACATGCAAACCTACTCAT
AGACGAGATGGAAATCGAGTGCAATACCAATTCCATTCCAACGAATGAAT
TCTAAATTTCTTTCTTCATCTCTCTGATTCCTCAAATCCGGTCTGAAGCT
CCCTTCTTTAGCATGAAGCGCTTTAGGTCACTCCTGCCCAAAACACAGTC
TGATTGCCAAAACTTTCGCTCATTCAACATTTTGACGACCATGCGCCTGC
GCAATCTTCGATTGAATTGAACGTTGAGGTGCAAGGTTATGAGAATCTGT
TTATTGATCCGTCcttcaataaaacttttgaaagtgATCAAGATGTCGTT
TCTCCCAACATACCTTCTTTCTACTTATTCACTACGTCAACATTTGAGTT
TTCCGTTGTTTATTTCAGGTACAGTTCCGTCTTGTGTGTGCTCCTTCCGC
TTTTCAGATGATCCGCAATCTCGGGTGAGCTGAGTATGAGAAAATGATAA
CTTGATTAATCGATGTCCTTTCTAAGAAAATACTCTTGCCctggtaaata
tttt
Run BLAST on NCBI

protein sequence of TCONS_00015621-protein

>TCONS_00015621-protein ID=TCONS_00015621-protein|Name=TCONS_00015621-protein|organism=Clytia hemisphaerica|type=polypeptide|length=410bp
KTMGGSKKRESNNNNRKKQQSLAHKDHRTNKASHRAGRHQHFEEHANSLP
SEEDLLHNNDDDESAGQSIPIHLAMWDMGHCDPKRCTGRKLQRYGLLTAL
RLNQRFNGIVLSPIGTKYVSKADRHLVLQHGSAVIDCSWAQLDQTPFNKM
KCSNPRLLPHMLAANPVNYGKPFKLSCVEAFAATLYLVGFKEYGEQILSR
FKWGLHFFELNRELLDLYEGCDTEAEVRQVERDWLEKCEAEYQAVKKTDM
MSIDMDLEGGFNPNRSANLLTGKRNTRDFPSSSDEIESEEEDSTESGEEE
EYETDRFGNTVRKINPVRENDISVNDDSVIRKDILSKDLNLNYGIDTDNT
DHNIPDEIKDISDKNKDVSDIECVISDSQKDVLTTGQLEVSSVQEKVSNI
DLNSSSTNKT
Run BLAST on NCBI

transcript from alignment at sc0000214:368140..376773+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015621 ID=TCONS_00015621|Name=TCONS_00015621|organism=Clytia hemisphaerica|type=transcript|length=8634bp|location=Sequence derived from alignment at sc0000214:368140..376773+ (Clytia hemisphaerica)
aaaacaatggGTGGGTCAAAGAAAAGAGAATCAAACAATAACAACAGAAA GAAACAACAATCATTAGCACACAAAGATCACAGAACAAACAAAGCATCAC ATCGCGCTGGGAGACATCAACATTTTGAAGAACATGCTAATTCATTACCA TCTGAAGAAGATTTGCTTCATAATAATGGTGATGAGCTTTCTAAGGGTGT TATAAGTCTTCTAAAATGATAAACTGTATAGACCTTTCAAGATTATGTTA CTGAGTGGGACATGGATTCATAATCACGTTATTTTCATAATCGCAAAGTC GCTTACCTCCTTTTCAAATTATCTCTTTGGTAATTATTTCCCAGAGAAGC TCATAAGAATAAAGTTAACCATCTTATAAAATAAGTAGAGGTCTATCATC TCTTTTTAGAAATAACACTCAATTTGTATCCCATtttagacactggcatg ttcatCCCTCCATTTTCAATCTCATTCCTGAAAATTTAGCATATTAGCAA TCCGAAACCACCATCCAGTCTCTTACCTTACGGGGGACGTTGTACGCCCC ACTGGTCTAATGAGACAAATTTGGGGTTTTCAGGCGATATGAAGAATGAC GTTTTCTGGATTTGAGCACGCCAAGTTATCATAGTATggtattttttctt aatttcagACGATGATGAATCTGCAGGACAATCCATCCCAATTCATCTTG CTATGTGGGTAAGAAAGCTTTTCCATATAATCAAGATAAAACGTCTTCTC TCCATTGTTCTTAATCACACTAAAGTGAGGGTGGGTGAACTAAGATCATT CaatcaccccctggaaattttagaataatttttagcccctaaaatgaAAA CCACTTCTTTGAACCCAATTTCAAAGATAAACCTAGTTGGGTCTTCTTGA GACAAATTTCGTGTTGATTTTTGGAGCAATCATTTTAGACAATTGAAATA GTAAtggaaaatgattgaaattcttcaaagaaaaaaaaatgttaaaattg gccaattttagtaccaggtaaaaaaaattctcaaatttttgtctGGATGC CATCTTTTTTAGGTATTTTACCAACCAGTTTTACTAAAAGGGTTTTTAAG TTTCATTCAAATGAACATTTATTGCAACGGGTTTGCAACAAATTATACAG GcatttagaaacttttcaagACACTTGTTAAATCAGAAACGCGTCAAAAA TTAGAAGGCGCGCAAAGGCGCGCAAAAAAGATTAAGGAGCACAAGGAGCG CCACTTTTTAGAAGGCGTGCAGGGCGTGCAATTCAACAGActcaattttt ggacctaccccggtgggctgtaggtcctataaattaacctctgttcgttc gtccgttcgtccgttcgtccgttcgtccgttcgttactagcttttctcgg gattggctcattagtttttcctaatttttggcacagagatgcaaaatggt aatgcccaaaatgtgacggagcccgattttcgaaaaaaattcatttccgg ccgaaaatgccggaaatcgccgtctttgcagattttcatcggactttttc cttatatttcgttgttttttcacacaaaaacattattgatagcaatgccc accatcaagcatggtttaattgtcaataaaagtgatttttgaagccggaa cttcctaaaaatcgccggaacagcctattttcgccggaaaaacggtattt cttgaatttctcgagctgtactttatatgttttcatgaaattttgcacac tgatgcaaaatgacaatacctaaaatgtgacggagcccgattttcgaaaa aaattcatttccggccgaaaatgccggaaatcgccgtctttgcagatttt catcggactttttccttatatttcgttgttttttcacacaaaaacattat tgatagcaatgcccaccatcaagcatggtttaattgtcaataaaagtgat ttttgaagccggaacttcctaaaaatcgccggaacagcctattttcgccg gaaaaacggtatttcttgaatttctcgagctgtactttatatgttttcat gaaattttgcacactgatgcaaaatgacaatacctaaaatgtgacggagc ccgattttcgaaaaaaattcatttccggccgaaaatgccggaaatcgccg tctttgcagattttcatcggactttttccttatatttcgttgttttttca cacaaaaacattattgatagcaatgcccaccatcaagcatggtttaattg tcaataaaagtgatttttgaagccggaacttcctaaaaatcgccggaaca gcctattttcgccggaaaaacggtatttcttgaatttctcgagctgtact ttatatgttttcatgaaattttgcacactgatgcaaaatgacaataccta aaatgtgacggagcccgattttcgaaaaaaattcatttccggccgaaaat gccggaaatcgccgtctttgcagattttcatcggactttttccttatatt tcgttgttttttcacacaaaaacattattgatagcaatgcccaccatcaa gcatggtttaattgtcaataaaagtgatttttgaagccggaacttcctaa aaatcgccggaacagcctattttcgccggaaaaacggtatttcttgaatt tctcgagctgtactttatatgttttcatgaaattttgcacactgatgcaa aatgacaatacctaaaatgtgacggagcccgattttcgaaaaaaattcat ttccggccgaaaatgccagaaatctgccggaaaaccgtttttttttacat tgtctcgaattttcatctttagctttttctgattttttgcacaaagatgc gtattagcaatgcctaaaacatggattagtccgatttttgagaaaaattt ttttccggttgaaaatgccggaaatcgccgtctttgcagattttcattat atgttttccttgtatttctatgttcttcGCATAAAagcattattgataac aatgctcaccatcaagcatgattcaattgtcaataaaacttttgcgacca gaactttctattaatttttccctacaacccttccctctccccccatcaac aatcaatgatgaatttattgcgttatgNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNt tcgctaaacgatatattttctgactgatttttttctcctcgcattgctat ctaactttcatcatcaggtaggtccattcagcatctagcttgtttttgtT AAAActcttcatttcttttgtagttaagaaaacttgtttgactatgtttt attttgatttggttacACATCACAAGGCTTTTTATGTTTTACTCATTTCT TTTGTATAGGATATGGGTCATTGTGATCCTAAGAGATGTACAGGTCGTAA GCTTCAGCGGTATGGCTTGCTTACAGCTTTAAGATTGAACCAACGATTTA ATGGAATCGTCCTCAGTCCGATCGGTACAAAATACGTCTCAAAAGCTGAC CGACATCTAGTTCTTCAACATGGGTCAGCGGTTATTGATTGTTCTTGGGC TCAACTAGACCAAACTCCTTTCAACAAGATGAAATGCTCCAACCCCCGTC TTTTACCACACATGTTGGCAGCCAACCCGGTGAATTATGGGAAACCTTTC AAATTATCGTGTGTCGAGGCTTTCGCTGCTACTCTATACCTTGTTGGTAA GCACAACGtttttaaaatcattaaaatttcgCGAGCTTTGCGAATATGGG TGTCACCCACCAAAGATTTACTCATTTTGATATCAATTTCGCATCTGAGT TATTCTTCTTTACTATTAATCCTACCTTACCTTACACGGCTCACaactaa cttttgatctagttgtcTTTTTTCCATGGCACCTCACCCCTCCAAGGGAT tgaaaacactagatagagctactgtCTTTCCCAATCCACGACACATGAAG AAAAACAATTGTCATCTCGTAGACCGcagttcggtaccggcaatttcTTC AATCATAAGAAACTAGCATGTTGTGAAACAAGGAGGTGGGAAAACGGGCA TGATTAATCGAATTGCCAGCGTCGAACTATGATCGACTTATTAAAGATGA CGCATTATTTTACTTTAGCCAGAGACGAAGTAGCttctctcgggtaccta atagccggggggaggTCGctaattcatttttgaaaattttccacccagga cattcttattccaaccccctcccgcttattgatttttgggaaaatttttt tgaaagttccctcttttgccctaattctgctgtattaggctctttttcga aaaatttccacccaggtaataggacatttttattccaacccctcccCCTT ATTAAGTtgtgagattttttccaacctctCCCCTCGCTTTTCTACCCGAG AGTActtagtgttttatataagtcTTTGACTTGAGTCTGTGACTACAGGA TCATAATGCATATCTTATAGAGACATTCACTCTTACAATTCTTTTTGTGT TTAGGTTTCAAGGAGTATGGTGAACAGATCTTATCACGTTTCAAATGGGG TCTTCACTTTTTCGAACTTAACAGGTTAGTCTTCAGGACAGGTTAGGTGT TTACCGCAAGTTAGGCTATGAAAAGGATCTATTGTGTTTTTTTGTATCTT TCTTAAAACTATAGTTGCTTGTATAAGTTGTTGTTTGTCGATGTTGTTAG TTGATGTTGTGTTGCTTCCAAGGATAAACCAATGGGCGTGGTAAGCGTTT TTACGGAAGCGAAGTACCACGGTCAACCTCGTGTGTTGtctttttgatgt tgtttttgcAACGGTGTTTGCCGTAAATTGTTCTACATTCTTCTAAATTC GGCATTCTCGTTAAGATGAGCGATGAGAATGATGAAGATAACAAGGGTGG ATTACTGAGGAATCAAATATTATCGTGCTACCTTTAGCTTAAGAATAGTT CATTCCCTTATCTGtagattttaatttcattaatgtttaaaaatcgtcaa aataaaacttttcccGAGTGTGCCCGAGTGACAGCAAACcaatattttat gatttttagctATTCTTTCGATTATTTGAATGGGGTATACGACCGGCGGG AACCGTGAACCCCTGGTTTGAGTCGCTGACGCCCTGGCCACTCAGATGGT TGGTAGATGACATTTTTGCcccctaagtgccccccccgggtttgAGACAT ACTATAGTTTAGCATTTTACGCATTACTTAGAGAATTGTTGGACTTATAC GAAGGTTGTGATACAGAAGCGGAAGTGCGGCAAGTGGAAAGAGACTGGTT GGAAAAATGCGAAGCGGAATATCAAGCCGTCAAAAAAACTGGTAAGACAT CTGCAtccattttatttttcgaaGGCATCggtgatccaaaaaatatcagc aatctgattggttaaaaagagtacaatatatcttttatttaaggccggtc tccacttttgcGCGACatgaatgaaaacttttttcacgttttttttaagg ttATTGGTCGGTTGAGAAATttacgtaacggatgaaaaaagaagaacttc tttcaactttttttttgttggcgcgaaacttttttatgacgtaatctttt cttcaggcaaaaaaggttaagaaaaaactgtcgcccatttcgcgcgaaag tgaaTACCGGCCTTAagaagagtacaatatatcttgaattttaaatgtaa gaaaaaagtatgtcatgttacatatcgttggaaagcatttttcatGCCCG TTGAAGGACATCGtcctcaaatttttgctgacattagcaattacgtcatt tttcaaacaacctaccgcaataacttttattggcttcattTGCAGATACA GGTTGTAATGTTTTAAAGAACGGGTcatgaaaaatgctttcaaaCGGTAT AGaacatgacatactttggagaaGAAAAGATTTTAGCCTGGGAAcctgtt ctggtctgtaaaatagacGAACAGGTGCCAATCTTTTGGGTCTGAAATTT AAATCCATTTTGACCCTAAAACTACAATTGTGCAAAGTTTTATGCCTTCA ATAACTTTTGGCACATCTAGACTGCACTAAAAGCCCGACCTGAGAGTAAC AGAGGTTTCTCTACGAAATCTTCCATAGATATGATGAGCATCGATATGGA TTTAGAAGGAGGCTTCAATCCAAACAGAAGTGCAAACCTTCTCACAGGAA AAAGGTATTTCCACTATTCTATATTCCAAAAAGCCTCAATTTGCACAAAA TAAGCCTTAAACACGGCCTTCACTGAAAAAAGTACCTgtagtggagtctc tataactcgaacctaaACAAATTGGTCGAGTTATGGAGTTATGGAGTTAT GGAGTTGGGATTATATAAGACATTTCTGAATTTCGACATATGCTGTTTTC CTCATGAAGCACCAGAAAAGTTTTTAAAGCGTCAGTTTTCAGTACAAACT GGTGGTCTTagggtttttgaaaaaaatgggtATTAAAAGATCGCTTCTCG ATAGTTACCCAATTCGGCCATTTTATCAAAGAAAGTGAAATGTCACGGAA AAATACTTTAATTCTACTGTCTGATTACTGAAATGGAATTAGTTTTCGCA AGATTTATTCTCacgaaaatgggaaaaatttacgaaaacgcgaaattaaa tcccgcgaaaattaatcaaattaCTTACAGCTTCGCATTTTTTAACGAAT CAAAATTTTAGAGACTTTTACATATAGTAGGGGCCAACCTTTATAATCAG TAGCATCTTTATGGGACTCAACcgcatgtgattggttcgaaagGAGATAG GATTATGAAGCTTTTTTGAGATGGGGCCTTCGAATATATTCTAACGtaga aattttttagattttaaaatattaCTCACGAGCGAATATAATCTTTTTCA GAAACACCAGAGATTTTCCATCAAGCAgtgatgaaattgaaagtgaagaa gaagatTCAACGGAGAGCGGAGAAGAGGAAGAATACGAGACTGATCGATT CGGTAACACTGTCCGAAAGATAAATCCTGTCCGAGAAAATGATATATCAG TGAATGACGATAGCGTAATTCGCAAAGACATTTTATCGAAAGATTTAAAT TTGAATTATGGTATAGACACTGATAATACCGACCATAATATTCCGGACGA AATTAAAGATATTTCGGACAAAAATAAAGATGTTTCGGACATTGAATGTG TTATTTCGGACAGTCAAAAAGACGTCTTAACGACGGGTCAACTTGAGGTA TCATCTGTGCAAGAAAAGGTATCGAATATTGATCTTAATTCATCATCTAC TAATAAGacgtgagatttttttttttgatactttatgagggagaagattt tgatttttaaaaagtcactggtaattttctattttccttCTTATGAACTT CAAAAAGCTGGAAAAGAGCTTTTAAAAAGCATTCCATAGAGCTCTTTCAA ATAGAATCATATTTTATGGTGATGGAGGATGTGTTTTTAATGAACTACAC CCCTGTGACATCGCAAATATCACCCCATTGACAACGAGTTTTTCTAGATA TCCCTGTCCTGGACTATGAACTGTTGACCAAATTACAAGAATTCAACTGT CCTCTTGAATTGGAAATGAGTATTGAAAGTATATTTTATCGATTTGTCGT TTGCTTCTCGTTAAAAATCTTTTATACGCAACATATATTGCATCTTCATC GTTATTTACATACACACTGATGAAAGCtcaccaaaatattttctacCCAA GCtttcaataaataaatattaacaTTACATTTTTCCACTAATAGATATAT GATACCTAGATATTATCTACAGTTAAATGACTAAATTTTGTACAAAATAT ATCTTCAATAAAACTTTAATTCAGGTAATAAATAACCTTCCATATATTAA CCGGTTTGGAagttttttgaagctttcaCATTGCTATATGTGGTGATTTT CGACACATTTTTGAGTCTTTGCAGCTGATTCTTTCTCTTGCGTGTGTATT TGTATCATACGTACATGCAAACCTACTCATAGACGAGATGGAAATCGAGT GCAATACCAATTCCATTCCAACGAATGAATTCTAAATTTCTTTCTTCATC TCTCTGATTCCTCAAATCCGGTCTGAAGCTCCCTTCTTTAGCATGAAGCG CTTTAGGTCACTCCTGCCCAAAACACAGTCTGATTGCCAAAACTTTCGCT CATTCAACATTTTGACGACCATGCGCCTGCGCAATCTTCGATTGAATTGA ACGTTGAGGTGCAAGGTTATGAGAATCTGTTTATTGATCCGTCcttcaat aaaacttttgaaagtgATCAAGATGTCGTTTCTCCCAACATACCTTCTTT CTACTTATTCACTACGTCAACATTTGAGTTTTCCGTTGTTTATTTCAGGT ACAGTTCCGTCTTGTGTGTGCTCCTTCCGCTTTTCAGATGATCCGCAATC TCGGGTGAGCTGAGTATGAGAAAATGATAACTTGATTAATCGATGTCCTT TCTAAGAAAATACTCTTGCCctggtaaatatttt

Coding sequence (CDS) from alignment at sc0000214:368140..376773+

>TCONS_00015621 ID=TCONS_00015621|Name=TCONS_00015621|organism=Clytia hemisphaerica|type=CDS|length=8631bp|location=Sequence derived from alignment at sc0000214:368140..376773+ (Clytia hemisphaerica)
aaaacaatggGTGGGTCAAAGAAAAGAGAATCAAACAATAACAACAGAAA
GAAACAACAATCATTAGCACACAAAGATCACAGAACAAACAAAGCATCAC
ATCGCGCTGGGAGACATCAACATTTTGAAGAACATGCTAATTCATTACCA
TCTGAAGAAGATTTGCTTCATAATAATGACGATGATGAATCTGCAGGACA
ATCCATCCCAATTCATCTTGCTATGTGGGATATGGGTCATTGTGATCCTA
AGAGATGTACAGGTCGTAAGCTTCAGCGGTATGGCTTGCTTACAGCTTTA
AGATTGAACCAACGATTTAATGGAATCGTCCTCAGTCCGATCGGTACAAA
ATACGTCTCAAAAGCTGACCGACATCTAGTTCTTCAACATGGGTCAGCGG
TTATTGATTGTTCTTGGGCTCAACTAGACCAAACTCCTTTCAACAAGATG
AAATGCTCCAACCCCCGTCTTTTACCACACATGTTGGCAGCCAACCCGGT
GAATTATGGGAAACCTTTCAAATTATCGTGTGTCGAGGCTTTCGCTGCTA
CTCTATACCTTGTTGGTTTCAAGGAGTATGGTGAACAGATCTTATCACGT
TTCAAATGGGGTCTTCACTTTTTCGAACTTAACAGAGAATTGTTGGACTT
ATACGAAGGTTGTGATACAGAAGCGGAAGTGCGGCAAGTGGAAAGAGACT
GGTTGGAAAAATGCGAAGCGGAATATCAAGCCGTCAAAAAAACTGATATG
ATGAGCATCGATATGGATTTAGAAGGAGGCTTCAATCCAAACAGAAGTGC
AAACCTTCTCACAGGAAAAAGAAACACCAGAGATTTTCCATCAAGCAgtg
atgaaattgaaagtgaagaagaagatTCAACGGAGAGCGGAGAAGAGGAA
GAATACGAGACTGATCGATTCGGTAACACTGTCCGAAAGATAAATCCTGT
CCGAGAAAATGATATATCAGTGAATGACGATAGCGTAATTCGCAAAGACA
TTTTATCGAAAGATTTAAATTTGAATTATGGTATAGACACTGATAATACC
GACCATAATATTCCGGACGAAATTAAAGATATTTCGGACAAAAATAAAGA
TGTTTCGGACATTGAATGTGTTATTTCGGACAGTCAAAAAGACGTCTTAA
CGACGGGTCAACTTGAGGTATCATCTGTGCAAGAAAAGGTATCGAATATT
GATCTTAATTCATCATCTACTAATAAGacgtgaaaaacaatggGTGGGTC
AAAGAAAAGAGAATCAAACAATAACAACAGAAAGAAACAACAATCATTAG
CACACAAAGATCACAGAACAAACAAAGCATCACATCGCGCTGGGAGACAT
CAACATTTTGAAGAACATGCTAATTCATTACCATCTGAAGAAGATTTGCT
TCATAATAATGACGATGATGAATCTGCAGGACAATCCATCCCAATTCATC
TTGCTATGTGGGATATGGGTCATTGTGATCCTAAGAGATGTACAGGTCGT
AAGCTTCAGCGGTATGGCTTGCTTACAGCTTTAAGATTGAACCAACGATT
TAATGGAATCGTCCTCAGTCCGATCGGTACAAAATACGTCTCAAAAGCTG
ACCGACATCTAGTTCTTCAACATGGGTCAGCGGTTATTGATTGTTCTTGG
GCTCAACTAGACCAAACTCCTTTCAACAAGATGAAATGCTCCAACCCCCG
TCTTTTACCACACATGTTGGCAGCCAACCCGGTGAATTATGGGAAACCTT
TCAAATTATCGTGTGTCGAGGCTTTCGCTGCTACTCTATACCTTGTTGGT
TTCAAGGAGTATGGTGAACAGATCTTATCACGTTTCAAATGGGGTCTTCA
CTTTTTCGAACTTAACAGAGAATTGTTGGACTTATACGAAGGTTGTGATA
CAGAAGCGGAAGTGCGGCAAGTGGAAAGAGACTGGTTGGAAAAATGCGAA
GCGGAATATCAAGCCGTCAAAAAAACTGATATGATGAGCATCGATATGGA
TTTAGAAGGAGGCTTCAATCCAAACAGAAGTGCAAACCTTCTCACAGGAA
AAAGAAACACCAGAGATTTTCCATCAAGCAgtgatgaaattgaaagtgaa
gaagaagatTCAACGGAGAGCGGAGAAGAGGAAGAATACGAGACTGATCG
ATTCGGTAACACTGTCCGAAAGATAAATCCTGTCCGAGAAAATGATATAT
CAGTGAATGACGATAGCGTAATTCGCAAAGACATTTTATCGAAAGATTTA
AATTTGAATTATGGTATAGACACTGATAATACCGACCATAATATTCCGGA
CGAAATTAAAGATATTTCGGACAAAAATAAAGATGTTTCGGACATTGAAT
GTGTTATTTCGGACAGTCAAAAAGACGTCTTAACGACGGGTCAACTTGAG
GTATCATCTGTGCAAGAAAAGGTATCGAATATTGATCTTAATTCATCATC
TACTAATAAGacgtgaaaaacaatggGTGGGTCAAAGAAAAGAGAATCAA
ACAATAACAACAGAAAGAAACAACAATCATTAGCACACAAAGATCACAGA
ACAAACAAAGCATCACATCGCGCTGGGAGACATCAACATTTTGAAGAACA
TGCTAATTCATTACCATCTGAAGAAGATTTGCTTCATAATAATGACGATG
ATGAATCTGCAGGACAATCCATCCCAATTCATCTTGCTATGTGGGATATG
GGTCATTGTGATCCTAAGAGATGTACAGGTCGTAAGCTTCAGCGGTATGG
CTTGCTTACAGCTTTAAGATTGAACCAACGATTTAATGGAATCGTCCTCA
GTCCGATCGGTACAAAATACGTCTCAAAAGCTGACCGACATCTAGTTCTT
CAACATGGGTCAGCGGTTATTGATTGTTCTTGGGCTCAACTAGACCAAAC
TCCTTTCAACAAGATGAAATGCTCCAACCCCCGTCTTTTACCACACATGT
TGGCAGCCAACCCGGTGAATTATGGGAAACCTTTCAAATTATCGTGTGTC
GAGGCTTTCGCTGCTACTCTATACCTTGTTGGTTTCAAGGAGTATGGTGA
ACAGATCTTATCACGTTTCAAATGGGGTCTTCACTTTTTCGAACTTAACA
GAGAATTGTTGGACTTATACGAAGGTTGTGATACAGAAGCGGAAGTGCGG
CAAGTGGAAAGAGACTGGTTGGAAAAATGCGAAGCGGAATATCAAGCCGT
CAAAAAAACTGATATGATGAGCATCGATATGGATTTAGAAGGAGGCTTCA
ATCCAAACAGAAGTGCAAACCTTCTCACAGGAAAAAGAAACACCAGAGAT
TTTCCATCAAGCAgtgatgaaattgaaagtgaagaagaagatTCAACGGA
GAGCGGAGAAGAGGAAGAATACGAGACTGATCGATTCGGTAACACTGTCC
GAAAGATAAATCCTGTCCGAGAAAATGATATATCAGTGAATGACGATAGC
GTAATTCGCAAAGACATTTTATCGAAAGATTTAAATTTGAATTATGGTAT
AGACACTGATAATACCGACCATAATATTCCGGACGAAATTAAAGATATTT
CGGACAAAAATAAAGATGTTTCGGACATTGAATGTGTTATTTCGGACAGT
CAAAAAGACGTCTTAACGACGGGTCAACTTGAGGTATCATCTGTGCAAGA
AAAGGTATCGAATATTGATCTTAATTCATCATCTACTAATAAGacgtgaa
aaacaatggGTGGGTCAAAGAAAAGAGAATCAAACAATAACAACAGAAAG
AAACAACAATCATTAGCACACAAAGATCACAGAACAAACAAAGCATCACA
TCGCGCTGGGAGACATCAACATTTTGAAGAACATGCTAATTCATTACCAT
CTGAAGAAGATTTGCTTCATAATAATGACGATGATGAATCTGCAGGACAA
TCCATCCCAATTCATCTTGCTATGTGGGATATGGGTCATTGTGATCCTAA
GAGATGTACAGGTCGTAAGCTTCAGCGGTATGGCTTGCTTACAGCTTTAA
GATTGAACCAACGATTTAATGGAATCGTCCTCAGTCCGATCGGTACAAAA
TACGTCTCAAAAGCTGACCGACATCTAGTTCTTCAACATGGGTCAGCGGT
TATTGATTGTTCTTGGGCTCAACTAGACCAAACTCCTTTCAACAAGATGA
AATGCTCCAACCCCCGTCTTTTACCACACATGTTGGCAGCCAACCCGGTG
AATTATGGGAAACCTTTCAAATTATCGTGTGTCGAGGCTTTCGCTGCTAC
TCTATACCTTGTTGGTTTCAAGGAGTATGGTGAACAGATCTTATCACGTT
TCAAATGGGGTCTTCACTTTTTCGAACTTAACAGAGAATTGTTGGACTTA
TACGAAGGTTGTGATACAGAAGCGGAAGTGCGGCAAGTGGAAAGAGACTG
GTTGGAAAAATGCGAAGCGGAATATCAAGCCGTCAAAAAAACTGATATGA
TGAGCATCGATATGGATTTAGAAGGAGGCTTCAATCCAAACAGAAGTGCA
AACCTTCTCACAGGAAAAAGAAACACCAGAGATTTTCCATCAAGCAgtga
tgaaattgaaagtgaagaagaagatTCAACGGAGAGCGGAGAAGAGGAAG
AATACGAGACTGATCGATTCGGTAACACTGTCCGAAAGATAAATCCTGTC
CGAGAAAATGATATATCAGTGAATGACGATAGCGTAATTCGCAAAGACAT
TTTATCGAAAGATTTAAATTTGAATTATGGTATAGACACTGATAATACCG
ACCATAATATTCCGGACGAAATTAAAGATATTTCGGACAAAAATAAAGAT
GTTTCGGACATTGAATGTGTTATTTCGGACAGTCAAAAAGACGTCTTAAC
GACGGGTCAACTTGAGGTATCATCTGTGCAAGAAAAGGTATCGAATATTG
ATCTTAATTCATCATCTACTAATAAGacgtgaaaaacaatggGTGGGTCA
AAGAAAAGAGAATCAAACAATAACAACAGAAAGAAACAACAATCATTAGC
ACACAAAGATCACAGAACAAACAAAGCATCACATCGCGCTGGGAGACATC
AACATTTTGAAGAACATGCTAATTCATTACCATCTGAAGAAGATTTGCTT
CATAATAATGACGATGATGAATCTGCAGGACAATCCATCCCAATTCATCT
TGCTATGTGGGATATGGGTCATTGTGATCCTAAGAGATGTACAGGTCGTA
AGCTTCAGCGGTATGGCTTGCTTACAGCTTTAAGATTGAACCAACGATTT
AATGGAATCGTCCTCAGTCCGATCGGTACAAAATACGTCTCAAAAGCTGA
CCGACATCTAGTTCTTCAACATGGGTCAGCGGTTATTGATTGTTCTTGGG
CTCAACTAGACCAAACTCCTTTCAACAAGATGAAATGCTCCAACCCCCGT
CTTTTACCACACATGTTGGCAGCCAACCCGGTGAATTATGGGAAACCTTT
CAAATTATCGTGTGTCGAGGCTTTCGCTGCTACTCTATACCTTGTTGGTT
TCAAGGAGTATGGTGAACAGATCTTATCACGTTTCAAATGGGGTCTTCAC
TTTTTCGAACTTAACAGAGAATTGTTGGACTTATACGAAGGTTGTGATAC
AGAAGCGGAAGTGCGGCAAGTGGAAAGAGACTGGTTGGAAAAATGCGAAG
CGGAATATCAAGCCGTCAAAAAAACTGATATGATGAGCATCGATATGGAT
TTAGAAGGAGGCTTCAATCCAAACAGAAGTGCAAACCTTCTCACAGGAAA
AAGAAACACCAGAGATTTTCCATCAAGCAgtgatgaaattgaaagtgaag
aagaagatTCAACGGAGAGCGGAGAAGAGGAAGAATACGAGACTGATCGA
TTCGGTAACACTGTCCGAAAGATAAATCCTGTCCGAGAAAATGATATATC
AGTGAATGACGATAGCGTAATTCGCAAAGACATTTTATCGAAAGATTTAA
ATTTGAATTATGGTATAGACACTGATAATACCGACCATAATATTCCGGAC
GAAATTAAAGATATTTCGGACAAAAATAAAGATGTTTCGGACATTGAATG
TGTTATTTCGGACAGTCAAAAAGACGTCTTAACGACGGGTCAACTTGAGG
TATCATCTGTGCAAGAAAAGGTATCGAATATTGATCTTAATTCATCATCT
ACTAATAAGacgtgaaaaacaatggGTGGGTCAAAGAAAAGAGAATCAAA
CAATAACAACAGAAAGAAACAACAATCATTAGCACACAAAGATCACAGAA
CAAACAAAGCATCACATCGCGCTGGGAGACATCAACATTTTGAAGAACAT
GCTAATTCATTACCATCTGAAGAAGATTTGCTTCATAATAATGACGATGA
TGAATCTGCAGGACAATCCATCCCAATTCATCTTGCTATGTGGGATATGG
GTCATTGTGATCCTAAGAGATGTACAGGTCGTAAGCTTCAGCGGTATGGC
TTGCTTACAGCTTTAAGATTGAACCAACGATTTAATGGAATCGTCCTCAG
TCCGATCGGTACAAAATACGTCTCAAAAGCTGACCGACATCTAGTTCTTC
AACATGGGTCAGCGGTTATTGATTGTTCTTGGGCTCAACTAGACCAAACT
CCTTTCAACAAGATGAAATGCTCCAACCCCCGTCTTTTACCACACATGTT
GGCAGCCAACCCGGTGAATTATGGGAAACCTTTCAAATTATCGTGTGTCG
AGGCTTTCGCTGCTACTCTATACCTTGTTGGTTTCAAGGAGTATGGTGAA
CAGATCTTATCACGTTTCAAATGGGGTCTTCACTTTTTCGAACTTAACAG
AGAATTGTTGGACTTATACGAAGGTTGTGATACAGAAGCGGAAGTGCGGC
AAGTGGAAAGAGACTGGTTGGAAAAATGCGAAGCGGAATATCAAGCCGTC
AAAAAAACTGATATGATGAGCATCGATATGGATTTAGAAGGAGGCTTCAA
TCCAAACAGAAGTGCAAACCTTCTCACAGGAAAAAGAAACACCAGAGATT
TTCCATCAAGCAgtgatgaaattgaaagtgaagaagaagatTCAACGGAG
AGCGGAGAAGAGGAAGAATACGAGACTGATCGATTCGGTAACACTGTCCG
AAAGATAAATCCTGTCCGAGAAAATGATATATCAGTGAATGACGATAGCG
TAATTCGCAAAGACATTTTATCGAAAGATTTAAATTTGAATTATGGTATA
GACACTGATAATACCGACCATAATATTCCGGACGAAATTAAAGATATTTC
GGACAAAAATAAAGATGTTTCGGACATTGAATGTGTTATTTCGGACAGTC
AAAAAGACGTCTTAACGACGGGTCAACTTGAGGTATCATCTGTGCAAGAA
AAGGTATCGAATATTGATCTTAATTCATCATCTACTAATAAGacgtgaaa
aacaatggGTGGGTCAAAGAAAAGAGAATCAAACAATAACAACAGAAAGA
AACAACAATCATTAGCACACAAAGATCACAGAACAAACAAAGCATCACAT
CGCGCTGGGAGACATCAACATTTTGAAGAACATGCTAATTCATTACCATC
TGAAGAAGATTTGCTTCATAATAATGACGATGATGAATCTGCAGGACAAT
CCATCCCAATTCATCTTGCTATGTGGGATATGGGTCATTGTGATCCTAAG
AGATGTACAGGTCGTAAGCTTCAGCGGTATGGCTTGCTTACAGCTTTAAG
ATTGAACCAACGATTTAATGGAATCGTCCTCAGTCCGATCGGTACAAAAT
ACGTCTCAAAAGCTGACCGACATCTAGTTCTTCAACATGGGTCAGCGGTT
ATTGATTGTTCTTGGGCTCAACTAGACCAAACTCCTTTCAACAAGATGAA
ATGCTCCAACCCCCGTCTTTTACCACACATGTTGGCAGCCAACCCGGTGA
ATTATGGGAAACCTTTCAAATTATCGTGTGTCGAGGCTTTCGCTGCTACT
CTATACCTTGTTGGTTTCAAGGAGTATGGTGAACAGATCTTATCACGTTT
CAAATGGGGTCTTCACTTTTTCGAACTTAACAGAGAATTGTTGGACTTAT
ACGAAGGTTGTGATACAGAAGCGGAAGTGCGGCAAGTGGAAAGAGACTGG
TTGGAAAAATGCGAAGCGGAATATCAAGCCGTCAAAAAAACTGATATGAT
GAGCATCGATATGGATTTAGAAGGAGGCTTCAATCCAAACAGAAGTGCAA
ACCTTCTCACAGGAAAAAGAAACACCAGAGATTTTCCATCAAGCAgtgat
gaaattgaaagtgaagaagaagatTCAACGGAGAGCGGAGAAGAGGAAGA
ATACGAGACTGATCGATTCGGTAACACTGTCCGAAAGATAAATCCTGTCC
GAGAAAATGATATATCAGTGAATGACGATAGCGTAATTCGCAAAGACATT
TTATCGAAAGATTTAAATTTGAATTATGGTATAGACACTGATAATACCGA
CCATAATATTCCGGACGAAATTAAAGATATTTCGGACAAAAATAAAGATG
TTTCGGACATTGAATGTGTTATTTCGGACAGTCAAAAAGACGTCTTAACG
ACGGGTCAACTTGAGGTATCATCTGTGCAAGAAAAGGTATCGAATATTGA
TCTTAATTCATCATCTACTAATAAGacgtga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008716XLOC_008716Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015621-exon-sc0000214-1491911889:368140..368317TCONS_00015621-exon-sc0000214-1491911889:368140..368317Clytia hemisphaericaexon
TCONS_00015621-exon-sc0000214-1510915933:368140..368317TCONS_00015621-exon-sc0000214-1510915933:368140..368317Clytia hemisphaericaexon
TCONS_00015621-exon-sc0000214-1575043694:368140..368317TCONS_00015621-exon-sc0000214-1575043694:368140..368317Clytia hemisphaericaexon
TCONS_00015621-exon-sc0000214-1491911889:368798..368847TCONS_00015621-exon-sc0000214-1491911889:368798..368847Clytia hemisphaericaexon
TCONS_00015621-exon-sc0000214-1510915933:368798..368847TCONS_00015621-exon-sc0000214-1510915933:368798..368847Clytia hemisphaericaexon
TCONS_00015621-exon-sc0000214-1575043694:368798..368847TCONS_00015621-exon-sc0000214-1575043694:368798..368847Clytia hemisphaericaexon
TCONS_00015621-exon-sc0000214-1491911889:371599..371935TCONS_00015621-exon-sc0000214-1491911889:371599..371935Clytia hemisphaericaexon
TCONS_00015621-exon-sc0000214-1510915933:371599..371935TCONS_00015621-exon-sc0000214-1510915933:371599..371935Clytia hemisphaericaexon
TCONS_00015621-exon-sc0000214-1575043694:371599..371935TCONS_00015621-exon-sc0000214-1575043694:371599..371935Clytia hemisphaericaexon
TCONS_00015621-exon-sc0000214-1491911889:372744..372813TCONS_00015621-exon-sc0000214-1491911889:372744..372813Clytia hemisphaericaexon
TCONS_00015621-exon-sc0000214-1510915933:372744..372813TCONS_00015621-exon-sc0000214-1510915933:372744..372813Clytia hemisphaericaexon
TCONS_00015621-exon-sc0000214-1575043694:372744..372813TCONS_00015621-exon-sc0000214-1575043694:372744..372813Clytia hemisphaericaexon
TCONS_00015621-exon-sc0000214-1491911889:373471..373580TCONS_00015621-exon-sc0000214-1491911889:373471..373580Clytia hemisphaericaexon
TCONS_00015621-exon-sc0000214-1510915933:373471..373580TCONS_00015621-exon-sc0000214-1510915933:373471..373580Clytia hemisphaericaexon
TCONS_00015621-exon-sc0000214-1575043694:373471..373580TCONS_00015621-exon-sc0000214-1575043694:373471..373580Clytia hemisphaericaexon
TCONS_00015621-exon-sc0000214-1491911889:374368..374443TCONS_00015621-exon-sc0000214-1491911889:374368..374443Clytia hemisphaericaexon
TCONS_00015621-exon-sc0000214-1510915933:374368..374443TCONS_00015621-exon-sc0000214-1510915933:374368..374443Clytia hemisphaericaexon
TCONS_00015621-exon-sc0000214-1575043694:374368..374443TCONS_00015621-exon-sc0000214-1575043694:374368..374443Clytia hemisphaericaexon
TCONS_00015621-exon-sc0000214-1491911889:375141..376773TCONS_00015621-exon-sc0000214-1491911889:375141..376773Clytia hemisphaericaexon
TCONS_00015621-exon-sc0000214-1510915933:375141..376773TCONS_00015621-exon-sc0000214-1510915933:375141..376773Clytia hemisphaericaexon
TCONS_00015621-exon-sc0000214-1575043694:375141..376773TCONS_00015621-exon-sc0000214-1575043694:375141..376773Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015621-proteinTCONS_00015621-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000214supercontigsc0000214:368140..376773 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
23.1875 23.3981 18.4814 18.2836 7.36769 5.32733 7.34158 8.31469 7.37849 6.19808 8.27786 7.42789 11.019 10.4318 11.1667 11.1865 9.2302 12.8803 8.30557 7.11479 8.06539 7.66734 17.5063 14.6812 8.97303 9.47699 5.80162 7.70994 8.15149 9.49121
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007177TDD_dom
IPR007209RNaseL-inhib_metal-bd_dom
IPR022968Rbsm_biogenesis
Blast
BLAST of TCONS_00015621 vs. Swiss-Prot (Human)
Match: TSR3 (Ribosome biogenesis protein TSR3 homolog OS=Homo sapiens GN=TSR3 PE=1 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 1.653e-70
Identity = 110/198 (55.56%), Postives = 143/198 (72.22%), Query Frame = 1
Query:  202 SIPIHLAMWDMGHCDPKRCTGRKLQRYGLLTALRLNQRFNGIVLSPIGTKYVSKADRHLVLQHGSAVIDCSWAQLDQTPFNKMKCSNPRLLPHMLAANPVNYGKPFKLSCVEAFAATLYLVGFKEYGEQILSRFKWGLHFFELNRELLDLYEGCDTEAEVRQVERDWLEKCEAEYQAVKKTDMMSIDMDLEGGFNPNR 795
            ++P  LAMW++GHCDP+RCTGRKL R GL+  LRL  RF G+VLSP+G +Y S ADR LV Q G AVIDCSWA+LD+TPF KM+ S+ RLLP+++AANPVNYG+P++LSCVEAFAAT  +VGF +    +L +FKWG  F +LNR+LLD Y  C +  EV Q E+++L   +   Q  ++ D   +D   E G NPNR
Sbjct:   55 ALPCTLAMWELGHCDPRRCTGRKLARLGLVRCLRLGHRFGGLVLSPVGKQYASPADRQLVAQSGVAVIDCSWARLDETPFGKMRGSHLRLLPYLVAANPVNYGRPYRLSCVEAFAATFCIVGFPDLAVILLRKFKWGKGFLDLNRQLLDKYAACGSPEEVLQAEQEFLANAKESPQE-EEIDPFDVDSGREFG-NPNR 250          
The following BLAST results are available for this feature:
BLAST of TCONS_00015621 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TSR31.653e-7055.56Ribosome biogenesis protein TSR3 homolog OS=Homo s... [more]
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