TCONS_00015621-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00015621-protein
Unique NameTCONS_00015621-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length410

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00015621-protein ID=TCONS_00015621-protein|Name=TCONS_00015621-protein|organism=Clytia hemisphaerica|type=polypeptide|length=410bp
KTMGGSKKRESNNNNRKKQQSLAHKDHRTNKASHRAGRHQHFEEHANSLP
SEEDLLHNNDDDESAGQSIPIHLAMWDMGHCDPKRCTGRKLQRYGLLTAL
RLNQRFNGIVLSPIGTKYVSKADRHLVLQHGSAVIDCSWAQLDQTPFNKM
KCSNPRLLPHMLAANPVNYGKPFKLSCVEAFAATLYLVGFKEYGEQILSR
FKWGLHFFELNRELLDLYEGCDTEAEVRQVERDWLEKCEAEYQAVKKTDM
MSIDMDLEGGFNPNRSANLLTGKRNTRDFPSSSDEIESEEEDSTESGEEE
EYETDRFGNTVRKINPVRENDISVNDDSVIRKDILSKDLNLNYGIDTDNT
DHNIPDEIKDISDKNKDVSDIECVISDSQKDVLTTGQLEVSSVQEKVSNI
DLNSSSTNKT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_008716XLOC_008716Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00015621TCONS_00015621Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007177TDD_dom
IPR007209RNaseL-inhib_metal-bd_dom
IPR022968Rbsm_biogenesis
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007177Ribosome biogenesis protein, C-terminalPFAMPF04034Ribo_biogen_Ccoord: 109..235
e-value: 6.1E-51
score: 171.3
IPR007177Ribosome biogenesis protein, C-terminalPRODOMPD016638coord: 91..235
e-value: 3.0E-47
score: 478.0
IPR007209RNase L inhibitor RLI, possible metal-binding domainPFAMPF04068RLIcoord: 72..104
e-value: 3.2E-13
score: 49.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 264..307
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..66
IPR022968Ribosome biogenesis proteinHAMAPMF_01116TSR3coord: 71..236
score: 39.782

Blast
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BLAST of TCONS_00015621-protein vs. Swiss-Prot (Human)
Match: TSR3 (Ribosome biogenesis protein TSR3 homolog OS=Homo sapiens GN=TSR3 PE=1 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 2.625e-78
Identity = 121/245 (49.39%), Postives = 157/245 (64.08%), Query Frame = 0 
Query:   68 SIPIHLAMWDMGHCDPKRCTGRKLQRYGLLTALRLNQRFNGIVLSPIGTKYVSKADRHLVLQHGSAVIDCSWAQLDQTPFNKMKCSNPRLLPHMLAANPVNYGKPFKLSCVEAFAATLYLVGFKEYGEQILSRFKWGLHFFELNRELLDLYEGCDTEAEVRQVERDWLEKCEAEYQAVKKTDMMSIDMDLEGGFNPNRSANLLTGKRNTRDFPSSSDEIESEEEDSTESGEEEEYETDRFGNTVR 312
            ++P  LAMW++GHCDP+RCTGRKL R GL+  LRL  RF G+VLSP+G +Y S ADR LV Q G AVIDCSWA+LD+TPF KM+ S+ RLLP+++AANPVNYG+P++LSCVEAFAAT  +VGF +    +L +FKWG  F +LNR+LLD Y  C +  EV Q E+++L   +   Q  ++ D   +D   E G NPNR         +T D  +S D     E     S   EE +T   G   R
Sbjct:   55 ALPCTLAMWELGHCDPRRCTGRKLARLGLVRCLRLGHRFGGLVLSPVGKQYASPADRQLVAQSGVAVIDCSWARLDETPFGKMRGSHLRLLPYLVAANPVNYGRPYRLSCVEAFAATFCIVGFPDLAVILLRKFKWGKGFLDLNRQLLDKYAACGSPEEVLQAEQEFLANAKESPQE-EEIDPFDVDSGREFG-NPNRPVASTRLPSDTDDSDASEDPGPGAERGGASSSCCEEEQTQGRGAEAR 297
The following BLAST results are available for this feature:
BLAST of TCONS_00015621-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TSR32.625e-7849.39Ribosome biogenesis protein TSR3 homolog OS=Homo s... [more]
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