TCONS_00015617 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00015617
Unique Name	TCONS_00015617
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	612

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000214:308497..312673+
coding sequence from alignment at sc0000214:308497..312673+

transcript sequence

>TCONS_00015617 ID=TCONS_00015617|Name=TCONS_00015617|organism=Clytia hemisphaerica|type=transcript|length=612bp
AAGCGAAGAGTCAAAGTATCAACCAAGAAGTGGGAGGCGGAGCCACAGCC
ACCAATGAGATCTGGGCATTACTAATATGGATCACGGAAAGAGTGTTTTC
CATCACTCGCAGAATTTGACGATTTTCATTGAACAATGGTCTTTGAGAAG
CACGAAAGAGTTTGTTGGAACTTGTATAGCTATTGGATGTTTGGCATTTT
TCCATGAAGCGATGAAAGTCGTCCTCCATGTTGTCACACAGAAACAAAAA
GCTTGTCACAAATCATCGATCGTCATATTAACAATGAACCATGTCAAATA
CAGGAAATCTACCTTtCGACTACGGAAGTTTTGTTGGCATTTATTACAAA
CGATGATATATACTTTACAAACAATGTCTGGTTTCTTGATAATGTTAGCA
GTTATGTCTTACAATGTTTATATCTTAATGTCAGCAATCGTTGGCTTTGC
GTTTGGTTATCTCATGTTGGGCTGGATAACTGCTCCCTTTGGtggagata
ttcaattttgaagtGCATTACTTCTCTGGAATAACATATTAGATGATTAA
ATAGGATGGTCtgagaattttaaaaacttttatattcATAATGCTAGAAA
CTTTTATCTGac

Run BLAST on NCBI

protein sequence of TCONS_00015617-protein

>TCONS_00015617-protein ID=TCONS_00015617-protein|Name=TCONS_00015617-protein|organism=Clytia hemisphaerica|type=polypeptide|length=144bp
MDHGKSVFHHSQNLTIFIEQWSLRSTKEFVGTCIAIGCLAFFHEAMKVVL
HVVTQKQKACHKSSIVILTMNHVKYRKSTFRLRKFCWHLLQTMIYTLQTM
SGFLIMLAVMSYNVYILMSAIVGFAFGYLMLGWITAPFGGDIQF

Run BLAST on NCBI

transcript from alignment at sc0000214:308497..312673+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00015617 ID=TCONS_00015617|Name=TCONS_00015617|organism=Clytia hemisphaerica|type=transcript|length=4177bp|location=Sequence derived from alignment at sc0000214:308497..312673+ (Clytia hemisphaerica)
AAGCGAAGAGTCAAAGTATCAACCAAGAAGTGGGAGGCGGAGCCACAGCC
ACCAATGAGATCTGGGCATTACTAATATGGATCACGGAAAGGTTGATCTT
ATtctattaatttatttttagtttttgattcTAAATTCATCAAATCAATC
CAAAGAAtctgcaaattttcaaaagtactTTATTATGTAAAGATGAATAT
GCATTGATGACCAAatttaaaggccggtctccactgtgcgcgcttcgatc
gcactttttcaaGCAGAGCTTCCATGCTatttggtcaaaagaaaaatgaa
gcaacccCATTGGTGTGATCTGACAACGGTTAAAATAAGTTGAAatatgt
tcaacttttttcgagcgcgcgctataTTTTCATCACgtaatctttttatt
tcaagcaaaaaagattgaagcAAAAAAAGTGCGGTCGCAGCGCAcgcaag
tggaaaccggccttaAGCCTCGtaaaagaattctttttttcCTCTTGATT
CTTCTAGAGTGTTTTCCATCACTCGCAGAATTTGACGATTTTCATTGAAC
AATGGTCTTTGAGAAGCACGAAAGgtatcaaaatttgttttaatagCTTA
CAAGATTGCTTTGTTTCACTATCCCAGATTACATGACGACCTAAGTAAAA
AacaacaagttttatttttattttcagcaaaagcttttcggtaAAACCAT
CTTCAGCATCTAGCACTGAAGATGGTTTTACATGACGTCCTCATCCtata
taattatattttatttagaaaCCTTTTTCATCTTTGCTTTATTCTGTAGA
GTTTGTTGGAACTTGTATAGCTATTGGATGTTTGGCATTTTTCCATGAAG
CGATGAAAGTCGTCCTCCATGTTGTCACACAGAAACAAAAAGCTTGTCAC
AAATCGTAAGTTTGAACATAGCCCGTATAAGAAACCCCgatctggaagcc
ttttgtatctttttattgtttgaaactTAAATTTGCGTTGaaattttgat
catgtgataAACTTTTGAACCAATTCGAAGAGGAGTATTTGGTAACGTTA
TTTTTATAATCGTTACTAACAAAAGAGAAAGtctaacaaaaagttacaac
aatataccctgagtatcagaggttaagttttcaaagaaaatagtaacctc
tgaagacaaataatagaaattttatcgcgcatgtgtcaatctaatcactg
tagNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNtgacgctcatccaagatcttggatggt
cgtcatggttacttttgtcttcgctgattgcgcgatgaatagaatctcga
ttcgtcggcacagcgtaaatatatgtttttgagctgtgcttttcacggta
acaacaataggcttccattccagaccagggttttttatacggactatggt
ttGAAAAAGATTCTAGAGATAAACCCCGTTTTTATATTAATGTTTCGTTT
CATCTTAGGTAGTAACTAAACAAACAGGCTCATAACAAGACTGAATTTGA
CATGCACAACGAATTCGAGCGAGGGCCTAGAATAACTAATAAACCACTTC
GTCGTATTTCGCTGCGGCTTACGCTTGTAATGAGCAACCTTTATAAATAA
ACAATATTTTCGTGTACTGTGTCTCGGAAAAGGCGGACGCTTGCTAGCTT
AGGAATAAATTATGCAATGATTGGTACGGAATGTCAGTTTTGAGCCTTTC
TTAGAGTTACAATAATGATAGTCAACGTGACACGTttcttctttataaaa
acatccaatatttttgaagccttcggatgttcttaacttgttgagtttta
agcctgttctttttttcattttgtgagCATTCTTGTCACTTTTCATAAGA
AATCGCAAAACCTTGATATGTTCCTAAATttctatgttcttatatagttt
gttcttataaaaaaagcttatTTTTTATGCCTCCTCCCTAAAAATTCTTG
CTGGTTTGAAGATTAAGATTATTATCTTTCGTTTTCTTATAGATCGATCG
TCATATTAACAATGAACCATGTCAAATACAGGAAATCTACCTTGTAAGTA
CTTCCTGATTAGGACAATAGCAACTATCTTTCTTGCACTATTCGCTCTtc
tttttgcctgcgatggcttaaagcatgACATCTaatccttcgggctttac
aaatcTGTGGATCTGATTTTGACGTTTATGATGGAGAGAGTTTTTTGTAG
CTATACCCCTGTGgtgtactaggtttgcgagatgagGGGTtaaggagcga
tggccaagtggtcaaaggtgTCAGCATCTCAAACCAGGGATTCAcagttc
gaatccccgctccttccaatgttccgttcagttcataaaTAACCGAGCAG
GCTTGCTGTGGACCCcgtaaaaacaatcaaaagactgtctaaaagtctta
GATTAccgggctatccacgtaaaacaTCGACTCTATCCATCTATCTACGG
GTGTGTCCGTGCGGGTATAAATCACAGATTTATAATAAACCTCGAAGGgt
tagatgtcgtgctttaagcaatcgcaggcaaaaaagtgCATAGTGCAAGA
AATAtagttgctattgttttcaaaaatccctgaagcttctgattggacaa
gtgctgaaattctattgtgaTGTCACGTGACCTAAGTAACTGAGAAATTA
CCGAGaaacggcacacttttcagccaaagcacgacatctagccctttggg
cttcgggctttataaatctgtggtaTGAGCCAGATATTGAAaatcaaccc
ttagagagactgaattttgaaaatcttgaaattttttgacgtttttgccg
CCTTTACAGACactttttccccaaaatttctgccaaaaatttcaaatttt
agtacagatttcaaaactttatgaccctttgaggaaATCGAGTTTCGATT
TTCGTAGTTTTGGAaaccttacagagactcaattactttttaatgatttt
tgtacccctttaagggactttcaagggtgtgaaaaagggtcCCTAATGGC
TCGCATATACCTGGCACTTATTTTGCCAAAGAATCCCCTCCCTCGGGAGA
TTTGCCCCTCAGTATTTTAATTTAGATTAAATTTTGTGCACTTTTTTCCC
TTTCTATGtatgtttatgtttttatttcagtCGACTACGGAAGTTTTGTT
GGCATTTATTACAAACGATGATATATACTTTACAAACAATGTCTGGTTTC
TTGATAATGTTAGCAGTTATGTCTTACAATGTTTATATCTTAATGTCAGC
AATCGTTGGCTTTGCGTTTGGTTATCTCATGTTGGGCTGGATAACTGCTC
CCTTTGGtggagatattcaattttgaagtGCATTACTTCTCTGGAATAAC
ATATTAGATGATTAAATAGGATGGTCtgagaattttaaaaacttttatat
tcATAATGCTAGAAACTTTTATCTGac

Coding sequence (CDS) from alignment at sc0000214:308497..312673+

>TCONS_00015617 ID=TCONS_00015617|Name=TCONS_00015617|organism=Clytia hemisphaerica|type=CDS|length=2175bp|location=Sequence derived from alignment at sc0000214:308497..312673+ (Clytia hemisphaerica)
ATGGATCACGGAAAGAGTGTTTTCCATCACTCGCAGAATTTGACGATTTT
CATTGAACAATGGTCTTTGAGAAGCACGAAAGAGTTTGTTGGAACTTGTA
TAGCTATTGGATGTTTGGCATTTTTCCATGAAGCGATGAAAGTCGTCCTC
CATGTTGTCACACAGAAACAAAAAGCTTGTCACAAATCATCGATCGTCAT
ATTAACAATGAACCATGTCAAATACAGGAAATCTACCTTtCGACTACGGA
AGTTTTGTTGGCATTTATTACAAACGATGATATATACTTTACAAACAATG
TCTGGTTTCTTGATAATGTTAGCAGTTATGTCTTACAATGTTTATATCTT
AATGTCAGCAATCGTTGGCTTTGCGTTTGGTTATCTCATGTTGGGCTGGA
TAACTGCTCCCTTTGGtggagatattcaattttgaATGGATCACGGAAAG
AGTGTTTTCCATCACTCGCAGAATTTGACGATTTTCATTGAACAATGGTC
TTTGAGAAGCACGAAAGAGTTTGTTGGAACTTGTATAGCTATTGGATGTT
TGGCATTTTTCCATGAAGCGATGAAAGTCGTCCTCCATGTTGTCACACAG
AAACAAAAAGCTTGTCACAAATCATCGATCGTCATATTAACAATGAACCA
TGTCAAATACAGGAAATCTACCTTtCGACTACGGAAGTTTTGTTGGCATT
TATTACAAACGATGATATATACTTTACAAACAATGTCTGGTTTCTTGATA
ATGTTAGCAGTTATGTCTTACAATGTTTATATCTTAATGTCAGCAATCGT
TGGCTTTGCGTTTGGTTATCTCATGTTGGGCTGGATAACTGCTCCCTTTG
GtggagatattcaattttgaATGGATCACGGAAAGAGTGTTTTCCATCAC
TCGCAGAATTTGACGATTTTCATTGAACAATGGTCTTTGAGAAGCACGAA
AGAGTTTGTTGGAACTTGTATAGCTATTGGATGTTTGGCATTTTTCCATG
AAGCGATGAAAGTCGTCCTCCATGTTGTCACACAGAAACAAAAAGCTTGT
CACAAATCATCGATCGTCATATTAACAATGAACCATGTCAAATACAGGAA
ATCTACCTTtCGACTACGGAAGTTTTGTTGGCATTTATTACAAACGATGA
TATATACTTTACAAACAATGTCTGGTTTCTTGATAATGTTAGCAGTTATG
TCTTACAATGTTTATATCTTAATGTCAGCAATCGTTGGCTTTGCGTTTGG
TTATCTCATGTTGGGCTGGATAACTGCTCCCTTTGGtggagatattcaat
tttgaATGGATCACGGAAAGAGTGTTTTCCATCACTCGCAGAATTTGACG
ATTTTCATTGAACAATGGTCTTTGAGAAGCACGAAAGAGTTTGTTGGAAC
TTGTATAGCTATTGGATGTTTGGCATTTTTCCATGAAGCGATGAAAGTCG
TCCTCCATGTTGTCACACAGAAACAAAAAGCTTGTCACAAATCATCGATC
GTCATATTAACAATGAACCATGTCAAATACAGGAAATCTACCTTtCGACT
ACGGAAGTTTTGTTGGCATTTATTACAAACGATGATATATACTTTACAAA
CAATGTCTGGTTTCTTGATAATGTTAGCAGTTATGTCTTACAATGTTTAT
ATCTTAATGTCAGCAATCGTTGGCTTTGCGTTTGGTTATCTCATGTTGGG
CTGGATAACTGCTCCCTTTGGtggagatattcaattttgaATGGATCACG
GAAAGAGTGTTTTCCATCACTCGCAGAATTTGACGATTTTCATTGAACAA
TGGTCTTTGAGAAGCACGAAAGAGTTTGTTGGAACTTGTATAGCTATTGG
ATGTTTGGCATTTTTCCATGAAGCGATGAAAGTCGTCCTCCATGTTGTCA
CACAGAAACAAAAAGCTTGTCACAAATCATCGATCGTCATATTAACAATG
AACCATGTCAAATACAGGAAATCTACCTTtCGACTACGGAAGTTTTGTTG
GCATTTATTACAAACGATGATATATACTTTACAAACAATGTCTGGTTTCT
TGATAATGTTAGCAGTTATGTCTTACAATGTTTATATCTTAATGTCAGCA
ATCGTTGGCTTTGCGTTTGGTTATCTCATGTTGGGCTGGATAACTGCTCC
CTTTGGtggagatattcaattttga

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_008713	XLOC_008713	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00015617-protein	TCONS_00015617-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000214	supercontig	sc0000214:308497..312673 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.118719	0.56288	0.113182	0.211919	0.148369	0	0	0.234521	0.234195	0.790444	3.04931	0.214582	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR007274	Cop_transporter

Vocabulary: **Biological Process**
Term	Definition
GO:0035434	copper ion transmembrane transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0005375	copper ion transmembrane transporter activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0035434	copper ion transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005375	copper ion transmembrane transporter activity

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00015617 vs. Swiss-Prot (Human)

BLAST of TCONS_00015617 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00015617 (transcript) - C. hemisphaerica