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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015615 ID=TCONS_00015615|Name=TCONS_00015615|organism=Clytia hemisphaerica|type=transcript|length=683bp
tagatttcttatTCGATGGTTTTTTGTTCGTTTCGTCGACGCCTTCCATC
AAACTTTTCCAAATTCCAACAACAACatacaacaaacaacaaacatgAGA
AGtcgtttcagtcattttgaCGCCGTTTACGCTTGCGTTATTACGTTCCT
TGAATCTACGTATTCCCTTCACTTTTTTCAGCGCTTTGAAACTGACTGCA
CGCTACTGTATCTATGTAGAACCGTTTTGGTACTACCACGTCTACGTCTG
TCTACGTTTACGTCTTATGGTTATCTTTGCGCTTTACGTGAatacagata
aaaaaaatggTGCAAGGTTGTTGGAAAATTATAACTTTTCTACCTTATTG
ATTTTAATCAGaagatttcaactttttataaagaaactgattttctcCTA
AGTCTCACACAGTTGACAAATCTTAAGGCCAAATTGTAAAAGTTAGTTTC
AACTCTCAAATGTTTAGCAGTAAAAGGGTTTCTAGGAATCTTGGACGTGG
CAATTAACGAAAGCAACGTATATTAATTTTCAGAGCGCCAAAGTTTTTAT
GTAGATGTAAATATATTATATAGCTATTGTACATATCAATATGGTTTTAA
TTTAATTAAGATAGTTTGATTTTAATTGTATTTGTATATATCAGGTGTTG
taaattattttaactaaattcatgctaaataag Run BLAST on NCBI protein sequence of TCONS_00015615-protein >TCONS_00015615-protein ID=TCONS_00015615-protein|Name=TCONS_00015615-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
RFLIRWFFVRFVDAFHQTFPNSNNNIQQTTNMRSRFSHFDAVYACVITFL
ESTYSLHFFQRFETDCTLLYLCRTVLVLPRLRLSTFTSYGYLCALREYR Run BLAST on NCBI transcript from alignment at sc0000214:303381..306445+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015615 ID=TCONS_00015615|Name=TCONS_00015615|organism=Clytia hemisphaerica|type=transcript|length=3065bp|location=Sequence derived from alignment at sc0000214:303381..306445+ (Clytia hemisphaerica)
tagatttcttatTCGATGGTTTTTTGTTCGTTTCGTCGACGCCTTCCATC
AAACTTTTCCAAGTAAgtccattgttttttttttcagaaaccAAATGAGT
TGTTTCTTGATAAAAGGTTATAGTTTTTTTTGGTTGAATGAGTTCATTTT
AAAAAGCTTCAAAGTAGATTTCTGTTTGGATgtaaacccggggggggggc
agtcaggcaaattgaccgacggatATGTGCttggcggttaagggtatgtt
tttcaaaatatcagaaatgcactgtaagggtggacttttgataaatgcac
tgtaagggtggaaattttagcaaatctgggaaaaattgcaaatttttgct
caaaaatgttgattttttttgctctaaaagagtttaaaatttgaaaaaat
gcactgtaagggtggaaattttagcaaatctgggaaaaattgcaaatttt
tgctcaaaaatgttgattttttttgctctaaaagagtttaaaatttgaaa
aaatgcactgtaagggtatgaatttcaccgatttttttctgcactgtaag
ggtgcaattctaaaagtcatttttttcaccgcacataccgtcagttggta
aacccactgcccccccggATGTAAAACAGACATTTAGTACCCATTTTAAA
TGTGAAATTTACTTGACTTGAAaatgtttatttgttttttttataaaagc
aaaatggttcgaatttgaaaaaaagaagaatatagcgccacaaatttaat
ttttccttttttgatacatataaaatggcttctgtatgttctatggaaag
aaagtttaaaaacgtcaatttttattgattttttgtacGTATTCTACAAA
CCCCTGTCTCACTCTCTAGAGGCTTTTTCgcaatacactcttttttttat
aagaatacactttataagaatgtccatgatgaaaatcgccataaaactaa
gaatatgctaagaatatcaccatcatggaattatgctaataaagctaaga
atgccatttttagagtattttcaattataaactgtcaattatccccaagt
aaggctcactccttttacaaaaatgccattttatgcttgagaagtatgta
ctaaatgttaaatctagtatgaattaggatcctaacctaagaatatgctg
taagaatattttgatgattttcccaaaaaagttaagaatatctatgatga
aatgaatttacaccattcttataaaaaaaacgtgtatctaacAACAAAGA
CCATTTGAGAGAGAAAAAATTGGTGTTTttggacccttagagagactttt
cccaaagtttttgtcgatttttactCCATTTTGTCCAAGTTTTTTAAAAT
TGTGACCCTTTTAGAGAGGAAATGTCTATTtgacttacacgttttttttt
tattatacctAAGattacacctaaaatttggctgggcctggatgtgctta
tttttttagcaattttcagcctaaaatgttcttaaacgcgttcttaattt
ttcggactactttaaatcgacaacatcatgcaaaataaagagcacttaaa
gttggtaaaatttgcacaatatttgactctcgattttagaaaatccatca
cTAAGTTtagttaaaactgcttgaaaagaggaaaaaattgtagtttcttg
tcatttttttccaagctgaggctgggcatgttcttacgatgttcttaatt
tttcgacgaatttcagcctaaatgttcttataaactgggttctaataaag
aaaaaaacgtgtaatttgctTTTAAATGGACCGGATTTCACTTTatttaa
tttatcatttttataaaATCACGTTTTTCGAATCATGGCGTCATATTTTA
aatcgttcttttcttttaaaggacacatttttgaaatgttttgttgTGAT
GTTATTCaagtttttcattcaaaacacAACCATTAATATTGAGTCCAACC
AACTTCATCgcaatttttattctttcaatATTCTTTCTAGATTCCAACAA
CAACatacaacaaacaacaaacatgAGAAGtcgtttcagtcattttgaCG
CCGTTTACGCTTGCGTTATTACGTTCCTTGAATCTACGTATTCCCTTCAC
TTTTTTCAGCGTAAGTCGAATATCACTTGTGGAAATCTTTCTTAAGGAag
acccccttctcacagacccggtgggattttccAAAGTAGCAGACCAAATA
TCGATGGAGGTTGATATTCCCGTGCTATTTTATGgttggggatttgaatt
ccattgttttcgagccagaaaatttagCGGGAATATAAAAAGTAGCACAA
AATTTTGTAGTGAGGATtagcttatctgattattttcattggggacaaaa
attaaaaaaaagagtatGATTTTCCACTGAGGATGATATACAGAAGTTCT
GACTGTAATTCTGTTCTGGTCATATTTCGGCCAAATCTCACTGCTGTTAC
catttttaaggcatttttttGTGTCCTTGTGAActttggtcaaaaatatt
catttcgaCTGAAAAAAACCTTTTAGTTATTTATCTTCTTGCTGTCTTGC
TATCTATTTTTCAGGCTTTGAAACTGACTGCACGCTACTGTATCTATGTA
GAACCGTTTTGGTACTACCACGTCTACGTCTGTCTACGTTTACGTCTTAT
GGTTATCTTTGCGCTTTACGTGAatacagataaaaaaaatggTGCAAGGT
TGTTGGAAAATTATAACTTTTCTACCTTATTGATTTTAATCAGaagattt
caactttttataaagaaactgattttctcCTAAGTCTCACACAGTTGACA
AATCTTAAGGCCAAATTGTAAAAGTTAGTTTCAACTCTCAAATGTTTAGC
AGTAAAAGGGTTTCTAGGAATCTTGGACGTGGCAATTAACGAAAGCAACG
TATATTAATTTTCAGAGCGCCAAAGTTTTTATGTAGATGTAAATATATTA
TATAGCTATTGTACATATCAATATGGTTTTAATTTAATTAAGATAGTTTG
ATTTTAATTGTATTTGTATATATCAGGTGTTGtaaattattttaactaaa
ttcatgctaaataag Coding sequence (CDS) from alignment at sc0000214:303381..306445+ >TCONS_00015615 ID=TCONS_00015615|Name=TCONS_00015615|organism=Clytia hemisphaerica|type=CDS|length=900bp|location=Sequence derived from alignment at sc0000214:303381..306445+ (Clytia hemisphaerica)
agatttcttatTCGATGGTTTTTTGTTCGTTTCGTCGACGCCTTCCATCA
AACTTTTCCAAATTCCAACAACAACatacaacaaacaacaaacatgAGAA
GtcgtttcagtcattttgaCGCCGTTTACGCTTGCGTTATTACGTTCCTT
GAATCTACGTATTCCCTTCACTTTTTTCAGCGCTTTGAAACTGACTGCAC
GCTACTGTATCTATGTAGAACCGTTTTGGTACTACCACGTCTACGTCTGT
CTACGTTTACGTCTTATGGTTATCTTTGCGCTTTACGTGAatacagataa
agatttcttatTCGATGGTTTTTTGTTCGTTTCGTCGACGCCTTCCATCA
AACTTTTCCAAATTCCAACAACAACatacaacaaacaacaaacatgAGAA
GtcgtttcagtcattttgaCGCCGTTTACGCTTGCGTTATTACGTTCCTT
GAATCTACGTATTCCCTTCACTTTTTTCAGCGCTTTGAAACTGACTGCAC
GCTACTGTATCTATGTAGAACCGTTTTGGTACTACCACGTCTACGTCTGT
CTACGTTTACGTCTTATGGTTATCTTTGCGCTTTACGTGAatacagataa
agatttcttatTCGATGGTTTTTTGTTCGTTTCGTCGACGCCTTCCATCA
AACTTTTCCAAATTCCAACAACAACatacaacaaacaacaaacatgAGAA
GtcgtttcagtcattttgaCGCCGTTTACGCTTGCGTTATTACGTTCCTT
GAATCTACGTATTCCCTTCACTTTTTTCAGCGCTTTGAAACTGACTGCAC
GCTACTGTATCTATGTAGAACCGTTTTGGTACTACCACGTCTACGTCTGT
CTACGTTTACGTCTTATGGTTATCTTTGCGCTTTACGTGAatacagataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015615-exon-sc0000214-1491911889:303381..303442 | TCONS_00015615-exon-sc0000214-1491911889:303381..303442 | Clytia hemisphaerica | exon |
| TCONS_00015615-exon-sc0000214-1510915933:303381..303442 | TCONS_00015615-exon-sc0000214-1510915933:303381..303442 | Clytia hemisphaerica | exon |
| TCONS_00015615-exon-sc0000214-1575043694:303381..303442 | TCONS_00015615-exon-sc0000214-1575043694:303381..303442 | Clytia hemisphaerica | exon |
| TCONS_00015615-exon-sc0000214-1491911889:305371..305490 | TCONS_00015615-exon-sc0000214-1491911889:305371..305490 | Clytia hemisphaerica | exon |
| TCONS_00015615-exon-sc0000214-1510915933:305371..305490 | TCONS_00015615-exon-sc0000214-1510915933:305371..305490 | Clytia hemisphaerica | exon |
| TCONS_00015615-exon-sc0000214-1575043694:305371..305490 | TCONS_00015615-exon-sc0000214-1575043694:305371..305490 | Clytia hemisphaerica | exon |
| TCONS_00015615-exon-sc0000214-1491911889:305945..306445 | TCONS_00015615-exon-sc0000214-1491911889:305945..306445 | Clytia hemisphaerica | exon |
| TCONS_00015615-exon-sc0000214-1510915933:305945..306445 | TCONS_00015615-exon-sc0000214-1510915933:305945..306445 | Clytia hemisphaerica | exon |
| TCONS_00015615-exon-sc0000214-1575043694:305945..306445 | TCONS_00015615-exon-sc0000214-1575043694:305945..306445 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000214 | supercontig | sc0000214:303381..306445 + |
Blast
The following BLAST results are available for this feature:
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