|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015580 ID=TCONS_00015580|Name=TCONS_00015580|organism=Clytia hemisphaerica|type=transcript|length=2703bpRun BLAST on NCBI protein sequence of TCONS_00015580-protein >TCONS_00015580-protein ID=TCONS_00015580-protein|Name=TCONS_00015580-protein|organism=Clytia hemisphaerica|type=polypeptide|length=698bp MVGIMATQNQSHFSGNPGYVDPDYDSEEEFIDDTQFEDPEDFIDDISDEDRun BLAST on NCBI transcript from alignment at sc0000214:29253..53912+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00015580 ID=TCONS_00015580|Name=TCONS_00015580|organism=Clytia hemisphaerica|type=transcript|length=24660bp|location=Sequence derived from alignment at sc0000214:29253..53912+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000214:29253..53912+ >TCONS_00015580 ID=TCONS_00015580|Name=TCONS_00015580|organism=Clytia hemisphaerica|type=CDS|length=27261bp|location=Sequence derived from alignment at sc0000214:29253..53912+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00015580 vs. Swiss-Prot (Human)
Match: EIF3B (Eukaryotic translation initiation factor 3 subunit B OS=Homo sapiens GN=EIF3B PE=1 SV=3) HSP 1 Score: 808.905 bits (2088), Expect = 0.000e+0 Identity = 388/661 (58.70%), Postives = 508/661 (76.85%), Query Frame = 3
Query: 285 DDTQFEDPEDFIDDISDEDLLPDVLDQRPNESDSLDTVIIVDNVPVVGPDRLEKLKTIIRKVFSKFGNVVNEYYPEENGKTKGYIFLEFSNSSDASNAIKTANGYKLDKSHTFVVNSFSDFDKYKNVSPEWNPPAKEEYKEVCNLKSWLLEPDSNDQYSIIYAQGDKVVILQNGAAAPTMKNQRDNWTETTTKWSPKGSYLATFHRQGIALWGGPEFERIQRFNHSDVQLMDFSPCERYIVSYAPVQDANTQEPSGIIIWDSKTGAKKRGF-IATGGHWPVFKWSNDGKFVARSGNEVLSVYESPVFGLLDKKSIKIPGMKDFTWSPTQNIIAYWVPEDDNAPARVCLMELPSRREIRVKNLFNVHDCKMHWQKNGDFLCVKVERHTKSKKGFYYNLELFRMREKNIPIDTLEIKDTIQAFEWEPNGNKFGVIHGESPRICASFYELEKTTLGHANLLKTLEKKTCNTISWCPAGQFCVLAGLRSMNGVFEFVDTADMTTMNMGEHYMATDVEWDPTGRYLMTGVSWWAHKVDNGYFIWSFQGKILQRHPLDQFCNFSWRPRPXXXXXXXXXXXXXXXXXXXXXXXXXXDKLSQSKASKELIDKRRNLFNEFEEFRARHRATFEEYKSDRLALREGMDSEEESG---DQLEEKIEFFIREE 2255
D+ F DPEDF+DD+S+E+LL DVL RP E+D +D+VI+VDNVP VGPDRLEKLK +I K+FSKFG + N++YPEE+GKTKGYIFLE+++ + A +A+K A+GYKLDK HTF VN F+DFDKY +S EW+ P K+ +K++ NL+ WL E + DQYS+I+ GD+ I N P +R WTET +WSPKG+YLATFH++GIALWGG +F++IQRF+H VQL+DFSPCERY+V+++P+ D +P IIIWD TG KKRGF + HWP+FKWS+DGKF AR + LS+YE+P GLLDKKS+KI G+KDF+WSP NIIA+WVPED + PARV LM+LP+R+EIRV+NLFNV DCK+HWQKNGD+LCVKV+R K +G N E+FRMREK +P+D +E+K+TI AF WEPNG+KF V+HGE+PRI SFY ++ G L+K +K+ NTI W P GQF VLAGLRSMNG FVDT+D T MN+ EHYMA+DVEWDPTGRY++T VSWW+HKVDN Y++W+FQG++LQ++ D+FC WRPRP +LLS++++ +IKK+LKKY K FEQKD+LSQSKASKEL+++RR + +F ++R + + E K++RL LR G+D++E D EE IEFF+ EE
Sbjct: 149 DEPSFSDPEDFVDDVSEEELLGDVLKDRPQEADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDFDKYMTISDEWDIPEKQPFKDLGNLRYWLEEAECRDQYSVIFESGDRTSIFWNDVKDPVSIEERARWTETYVRWSPKGTYLATFHQRGIALWGGEKFKQIQRFSHQGVQLIDFSPCERYLVTFSPLMDTQ-DDPQAIIIWDILTGHKKRGFHCESSAHWPIFKWSHDGKFFARMTLDTLSIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWVPEDKDIPARVTLMQLPTRQEIRVRNLFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGVVTNFEIFRMREKQVPVDVVEMKETIIAFAWEPNGSKFAVLHGEAPRISVSFYHVKNN--GKIELIKMFDKQQANTIFWSPQGQFVVLAGLRSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYVVTSVSWWSHKVDNAYWLWTFQGRLLQKNNKDRFCQLLWRPRPPTLLSQEQIKQIKKDLKKYSKIFEQKDRLSQSKASKELVERRRTMMEDFRKYRKMAQELYMEQKNERLELRGGVDTDELDSNVDDWEEETIEFFVTEE 806 The following BLAST results are available for this feature:
BLAST of TCONS_00015580 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.