TCONS_00015580-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00015580-protein
Unique NameTCONS_00015580-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length698

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00015580-protein ID=TCONS_00015580-protein|Name=TCONS_00015580-protein|organism=Clytia hemisphaerica|type=polypeptide|length=698bp
MVGIMATQNQSHFSGNPGYVDPDYDSEEEFIDDTQFEDPEDFIDDISDED
LLPDVLDQRPNESDSLDTVIIVDNVPVVGPDRLEKLKTIIRKVFSKFGNV
VNEYYPEENGKTKGYIFLEFSNSSDASNAIKTANGYKLDKSHTFVVNSFS
DFDKYKNVSPEWNPPAKEEYKEVCNLKSWLLEPDSNDQYSIIYAQGDKVV
ILQNGAAAPTMKNQRDNWTETTTKWSPKGSYLATFHRQGIALWGGPEFER
IQRFNHSDVQLMDFSPCERYIVSYAPVQDANTQEPSGIIIWDSKTGAKKR
GFIATGGHWPVFKWSNDGKFVARSGNEVLSVYESPVFGLLDKKSIKIPGM
KDFTWSPTQNIIAYWVPEDDNAPARVCLMELPSRREIRVKNLFNVHDCKM
HWQKNGDFLCVKVERHTKSKKGFYYNLELFRMREKNIPIDTLEIKDTIQA
FEWEPNGNKFGVIHGESPRICASFYELEKTTLGHANLLKTLEKKTCNTIS
WCPAGQFCVLAGLRSMNGVFEFVDTADMTTMNMGEHYMATDVEWDPTGRY
LMTGVSWWAHKVDNGYFIWSFQGKILQRHPLDQFCNFSWRPRPESLLSEK
ELSKIKKELKKYQKQFEQKDKLSQSKASKELIDKRRNLFNEFEEFRARHR
ATFEEYKSDRLALREGMDSEEESGDQLEEKIEFFIREETEVIAKKKSE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_008707XLOC_008707Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00015580TCONS_00015580Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR013979TIF_beta_prop-like
IPR015943WD40/YVTN_repeat-like_dom
IPR011400EIF3B
IPR034363eIF3B_RRM
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005515protein binding
GO:0031369translation initiation factor binding
GO:0003743translation initiation factor activity
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
Vocabulary: Cellular Component
TermDefinition
GO:0005852eukaryotic translation initiation factor 3 complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006413 translational initiation
cellular_component GO:0005852 eukaryotic translation initiation factor 3 complex
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0005515 protein binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0031369 translation initiation factor binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 595..622
NoneNo IPR availableCOILSCoilCoilcoord: 667..687
NoneNo IPR availableGENE3D3.30.70.330coord: 65..147
e-value: 1.6E-10
score: 40.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availableSUPERFAMILY82171DPP6 N-terminal domain-likecoord: 221..574
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 69..147
e-value: 1.1E-8
score: 44.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 90..140
e-value: 1.1E-8
score: 34.7
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 68..151
score: 13.038
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 67..149
IPR013979Translation initiation factor, beta propellor-like domainPFAMPF08662eIF2Acoord: 390..586
e-value: 1.1E-58
score: 198.2
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 477..694
e-value: 5.2E-11
score: 41.6
coord: 221..476
e-value: 9.0E-27
score: 93.5
IPR011400Eukaryotic translation initiation factor 3 subunit BPIRSFPIRSF036424Transl_init_eIF3bcoord: 21..694
e-value: 2.5E-281
score: 932.7
IPR011400Eukaryotic translation initiation factor 3 subunit BHAMAPMF_03001eIF3bcoord: 61..693
score: 92.826
IPR034363eIF3B, RNA recognition motifCDDcd12278RRM_eIF3Bcoord: 67..147
e-value: 7.05959E-38
score: 135.01

Blast
[Close]
BLAST of TCONS_00015580-protein vs. Swiss-Prot (Human)
Match: EIF3B (Eukaryotic translation initiation factor 3 subunit B OS=Homo sapiens GN=EIF3B PE=1 SV=3)

HSP 1 Score: 849.351 bits (2193), Expect = 0.000e+0
Identity = 388/661 (58.70%), Postives = 508/661 (76.85%), Query Frame = 0 
Query:   32 DDTQFEDPEDFIDDISDEDLLPDVLDQRPNESDSLDTVIIVDNVPVVGPDRLEKLKTIIRKVFSKFGNVVNEYYPEENGKTKGYIFLEFSNSSDASNAIKTANGYKLDKSHTFVVNSFSDFDKYKNVSPEWNPPAKEEYKEVCNLKSWLLEPDSNDQYSIIYAQGDKVVILQNGAAAPTMKNQRDNWTETTTKWSPKGSYLATFHRQGIALWGGPEFERIQRFNHSDVQLMDFSPCERYIVSYAPVQDANTQEPSGIIIWDSKTGAKKRGF-IATGGHWPVFKWSNDGKFVARSGNEVLSVYESPVFGLLDKKSIKIPGMKDFTWSPTQNIIAYWVPEDDNAPARVCLMELPSRREIRVKNLFNVHDCKMHWQKNGDFLCVKVERHTKSKKGFYYNLELFRMREKNIPIDTLEIKDTIQAFEWEPNGNKFGVIHGESPRICASFYELEKTTLGHANLLKTLEKKTCNTISWCPAGQFCVLAGLRSMNGVFEFVDTADMTTMNMGEHYMATDVEWDPTGRYLMTGVSWWAHKVDNGYFIWSFQGKILQRHPLDQFCNFSWRPRPESLLSEKELSKIKKELKKYQKQFEQKDKLSQSKASKELIDKRRNLFNEFEEFRARHRATFEEYKSDRLALREGMDSEEESG---DQLEEKIEFFIREE 688
            D+  F DPEDF+DD+S+E+LL DVL  RP E+D +D+VI+VDNVP VGPDRLEKLK +I K+FSKFG + N++YPEE+GKTKGYIFLE+++ + A +A+K A+GYKLDK HTF VN F+DFDKY  +S EW+ P K+ +K++ NL+ WL E +  DQYS+I+  GD+  I  N    P    +R  WTET  +WSPKG+YLATFH++GIALWGG +F++IQRF+H  VQL+DFSPCERY+V+++P+ D    +P  IIIWD  TG KKRGF   +  HWP+FKWS+DGKF AR   + LS+YE+P  GLLDKKS+KI G+KDF+WSP  NIIA+WVPED + PARV LM+LP+R+EIRV+NLFNV DCK+HWQKNGD+LCVKV+R  K  +G   N E+FRMREK +P+D +E+K+TI AF WEPNG+KF V+HGE+PRI  SFY ++    G   L+K  +K+  NTI W P GQF VLAGLRSMNG   FVDT+D T MN+ EHYMA+DVEWDPTGRY++T VSWW+HKVDN Y++W+FQG++LQ++  D+FC   WRPRP +LLS++++ +IKK+LKKY K FEQKD+LSQSKASKEL+++RR +  +F ++R   +  + E K++RL LR G+D++E      D  EE IEFF+ EE
Sbjct:  149 DEPSFSDPEDFVDDVSEEELLGDVLKDRPQEADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDFDKYMTISDEWDIPEKQPFKDLGNLRYWLEEAECRDQYSVIFESGDRTSIFWNDVKDPVSIEERARWTETYVRWSPKGTYLATFHQRGIALWGGEKFKQIQRFSHQGVQLIDFSPCERYLVTFSPLMDTQ-DDPQAIIIWDILTGHKKRGFHCESSAHWPIFKWSHDGKFFARMTLDTLSIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWVPEDKDIPARVTLMQLPTRQEIRVRNLFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGVVTNFEIFRMREKQVPVDVVEMKETIIAFAWEPNGSKFAVLHGEAPRISVSFYHVKNN--GKIELIKMFDKQQANTIFWSPQGQFVVLAGLRSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYVVTSVSWWSHKVDNAYWLWTFQGRLLQKNNKDRFCQLLWRPRPPTLLSQEQIKQIKKDLKKYSKIFEQKDRLSQSKASKELVERRRTMMEDFRKYRKMAQELYMEQKNERLELRGGVDTDELDSNVDDWEEETIEFFVTEE 806
The following BLAST results are available for this feature:
BLAST of TCONS_00015580-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EIF3B0.000e+058.70Eukaryotic translation initiation factor 3 subunit... [more]
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