TCONS_00015579 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015579
Unique NameTCONS_00015579
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length911

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015579 ID=TCONS_00015579|Name=TCONS_00015579|organism=Clytia hemisphaerica|type=transcript|length=911bp
TTAAAAATGAGAAAATCTTCTGTCCCTTCATTACAAGAGCAATCTGCTAA
AAAACGTAAATTTTGTACACCATTCAATGGGAATTCTACGCAGAAAGAAC
AAAATTGTAGTTCTGGAACAAAGTTTCAAACACCTTTCAAAGCAAAGACT
GTTGCCAAGGAAACATTGCATAACGAAGAAAGATATGATACTGATGTTGG
GAATGTTAAGAATGTCATAGTTGGGAACACTCTTCCGGAGGAAAACCGGC
GAATAAACTTACTGTTCAATCTTGGAAAACCTCTAATGAAAAAGATGTCT
CTGCAGAGAAACAATCACGTACACTTACCTTAAAGCCGTCAAAACCGTTT
GTAAAACCTTCAAATTCCCGTCCAAATATTGGTAAAACAAAAAGTCTTCA
CAAAACTAAATTAATATCTAGCCAACAAGAAATTTCATCCAAACCAACTG
CTTCAACTGAGGATGAAAAGCACTATGAAGTTCTCTGGTGCAAGTGTTCA
TCGAAAAAGAACAAAGTGTGGGAAGGCGATGGAGTTTTGGTGGTCAAAAA
CAACAAACTTGCCATTTTATACGATACACAGAGGAATCAGGTACAGTACC
GGTGGTTGTGGACCCATACATAGCGCTATGTTTGCGCCCGCATCAACGCC
AAGGTGTGACATTTCTTTACGAATGTATTATGGGTATGCGCAGCGAAGAT
TGTGAAAGTCCAACATATGGTGCAATATTAGCTGATGAAATGGGTCTTGG
AAAAACAATACAATGTATTTCACTCATTTGGACTCTATTGAAGCAAGGTA
TTTACGGGCGTCCGACAGTTAAAAATGTAATTGTTGTCACACCTAACAGT
CTTGCTAAGGTAACCATTTGCTTTGACCACTCTAATCAGCCGTTAAGAGT
AGCCTAGTTTG
Run BLAST on NCBI

protein sequence of TCONS_00015579-protein

>TCONS_00015579-protein ID=TCONS_00015579-protein|Name=TCONS_00015579-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
LKMRKSSVPSLQEQSAKKRKFCTPFNGNSTQKEQNCSSGTKFQTPFKAKT
VAKETLHNEERYDTDVGNVKNVIVGNTLPEENRRINLLFNLGKPLMKKMS
LQRNNHVHLP
Run BLAST on NCBI

transcript from alignment at sc0000214:10039..13797+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015579 ID=TCONS_00015579|Name=TCONS_00015579|organism=Clytia hemisphaerica|type=transcript|length=3759bp|location=Sequence derived from alignment at sc0000214:10039..13797+ (Clytia hemisphaerica)
TTAAAAATGAGAAAATCTTCTGTCCCTTCATTACAAGAGCAATCTGCTAA
AAAACGTAAATTTTGTACACCATTCAATGGGAATTCTACGCAGAAAGAAC
AAAATTGTAGTTCTGGAACAAAGTTTCAAACACCTTTCAAAGCAAAGACT
GTTGCCAAGGAAACATTGCATAACGAAGAAAGATATGATACTGATGTTGG
GAATGTTAAGAATGTCATAGTTGGGAACACTCTTCCGGAGGAAAACCGGC
GAATAAACTTACTGTTCAATCTTGGAAAACCTCTAATGAAAAAGATGTCT
CTGCAGAGAAACAATCACGTACACTTACCTTAAAGCCGTCAAAACCGTTT
GTAAAACCTTCAAATTCCCGTCCAAATATTGGTAAAACAAAAAGTCTTCA
CAAAACTAAATTAATATCTAGCCAACAAGAAATTTCATCCAAACCAACTG
CTTCAACTGAGGATGAAAAGCACTATGAAGTTCTCTGGTAACTAAACTAA
TTTTGTTAACCTCTTTTGGTTTTATCGTAATCCAGTGTACGTTTAAGAAT
TCCCTGTACGTACAGGTATATCAAAACAAATACCTATTTATATTTTTAAC
GAACGTATTTTGTACTAGTACAATTTGCTTTGCATAGAAGTTGGAGAGGG
TGCTTATTGTAGGTAGTCAATGGTAAGCTGCTTGGAATGATTTTTATTCT
TTTACATAGGTGCAAGTGTTCATCGAAAAAGGTATCTACTTACTTATTAT
CAACGAACTGGCGAGTTCATTTTAGTAAGTGTAAAGTAATGTTTAATGAG
TGTTCTCGTTTACCTTATGATCCTACTAATAATTCGTCAATATTATCTTC
ATAGTAAATAAAATATCACGTATTTCCGAAAGCTATTATCATAATTGATT
CTCCTTAGTAATTTGACCTACAAAATTTGTTTAGTTTTGACTTGAGTTTT
GTTTTTAAGTATCAAAGTTATTTTTTTTAGAACAAAGTGTGGGAAGGCGA
TGGTAAGTGTTTGCTTAGTTCCTACTTTGAATATTCTCACAATTAAACGG
TTTTTAGTTTGGATAGCCATCTTTCGAGCATCCAGCTTCCCTTAAACATG
TCATTTAATTCAACTATAACAACAGTGTTTTAATCTGAAAATAACAGCTT
TTTGAAGTTAAGATGAACATTTCCGATTACTTTCAAGTATTTGGAAATTT
CATTTTTCTTAGGAGTTTTGGTGGTCAAAAACAACAAACTTGCCATTTTA
TACGATACACAGAGGAATCAGTAAGTGAtattttcccaccaaaattaaag
tTCATGAAACAcccttaatttttctttccttcctTGGAAATACCATAAAA
AACCCTTGAATTTTTCCCGTGCTCTAAATACAAAATTATTGCTATGAGTA
CGTTTTAATTTTCCCATTTAACACGGGAGATCCAATATTTTTAAGAGTCT
TGGAAATTGCGCAATGATTAATGTATATGTATTGACATAATCTTGTTTTG
TCAAGAAAAATAGATTTCTTATTTCTTGCAAGACCCTGTTTACTTTTGTG
TTGACAGATATCAACTTTCAACTGtagctttttcttttcctcttttgtTC
ATTTAAGAGTATGTGTCTACTAAAGCTAAAAAGCTGTAAATCAAACTTAA
GTATCAACCCCCGTCCAAAGTCTTCAAAAAACTGCTTACTAAGTTTCATT
TCAGAAATTCCGAGAAAAGCAATTTGTGTGGTACTTGAATTGAGTCGTTT
AGCGCTTTTTTACTAAAAGTACATGTaacattttttatgagaacaaacta
tataagacttcgatggccaaaatattaagcttGGCGggctcaaaaacacc
cgatttcttaggaaaatagataaaaatactCATTGGCTTAAAACATGATC
AAGTTGTAATAAAATTTCACCCTTATCATACAGTGAAATATATAAAATCA
CAAAGTGCTCAAGTAAATATTAATATATTGAAAAGATTCGAGCGAAATAT
TAGAATAAAGAACTAACTTTACACGTGTTTCATGCTGGCACAATCTTCAA
GAAATTTAGTGAATGGTGGATTTAATTGAATTCCAATAcacatattttta
taagaaactccaattttcgggtcaggacCTAGCATTTTAGctcattttgt
gaaaaatttgctttgaccacccATAATACAATTTTAAAGCTTATTGGGTC
AAGAGCTATCGTCTTCCATGGTTAGTTTGTCTAAAAAGCTTTTAGtttac
gagatagtgaaaaaaATGGGTAATTTAAGCACTTGAGCcttatgaaaata
atttgtttAGCGGATTTAAGAGTCTTTAGAGTCACCATGATTTTCTCAGT
AGTTAAAGAGAGAACCCGACGTCTTAAATAGGGGATGAGAGTCCCTTCCC
TTGTCAACACTTATTGATTGAATAACCATCTAttgttcaataataaaaaa
aaggttAATCAGTTCATTACAACTTTAGTCTTCACATTACAGGGTACAGT
ACCGGTGGTTGTGGACCCATACATAGCGCTATGTTTGCGCCCGCATCAAC
GCCAAGGTGTGACATTTCTTTACGAATGTATTATGGGTATGCGCAGCGAA
GATTGTGAAAGTCCAACATATGGTGCAATATTAGCGTGAGTTAGAactca
attttgtttttttttcaaaaagtaggcACCATGGGGAATGCAAAATCAAG
TACACGCTTTTAATGAAAGTCGGTAAATTTTGTCCAGCCTCGACTGTTAA
CATTCTTCATACAGTAATAATCTTCTTACTTATTAGTTTCAAAGCAGTTT
AAAACGTCCTCTTCAGTCtcttgattgattttttttcaattattactTAA
TAGCTTGAAGGAAGCTGAAAACGTCCTCTTCAGTCtcttgattgattttt
tttcaattagtcgttacaattttctttttcaaaaagtattcCACCGTTGG
GGAATGCAAAATGTCAAGAAAcgctttttttatgaaattcggTATATTTT
TATCCAGCCTCGACTGTTCACATTCACAATCTTCTTACCCTATAGCTTGA
AGGAAGCTGAGAAAGTCCTCTACAGTCtctttggttgatttttttcaatt
aatcgCTACTTTGTACAAACCAGTTAATTTACAGAAAATCTTCCATCGTA
AATTTCAATTCATTCTTCGGCGCAATGTTAAAGTGAATAAAGGGATAAAT
TATTACACATCTCGACATGGAGAAAGTATTATCTAGAATAATTTCTGAGG
AGCAATGACCGAATGGTCAATGCGTCAATCCTCGCGCGACTCAAAACAAA
GAATTTGCGGCTTGAATCCTCGCGCCGTTCATAGATAGCCGTGTCGACTG
ACCATGGAGCCCGTGACAAAAATTAAAAGCCTTAGATCTCTGGGCTATAC
ACGTAAAATATGGACTCTATCTACCTTTCTTAATCTTTATTTTAGTGATG
AAATGGGTCTTGGAAAAACAATACAATGTATTTCACTCATTTGGtatatg
ttttttctttctttcaatttatGATCTATAACGCTTTCGCTTTAGTCATT
GTGTTTTCAGTTTTTCAATTATTAGCAGGACGCCGTTCCATTAATTACAA
AGGTATTTTTTGAAATATTCTTTTTCAGGACTCTATTGAAGCAAGGTATT
TACGGGCGTCCGACAGTTAAAAATGTAATTGTTGTCACACCTAACAGTCT
TGCTAAGGTAACCATTTGCTTTGACCACTCTAATCAGCCGTTAAGAGTAG
CCTAGTTTG

Coding sequence (CDS) from alignment at sc0000214:10039..13797+

>TCONS_00015579 ID=TCONS_00015579|Name=TCONS_00015579|organism=Clytia hemisphaerica|type=CDS|length=333bp|location=Sequence derived from alignment at sc0000214:10039..13797+ (Clytia hemisphaerica)
TTAAAAATGAGAAAATCTTCTGTCCCTTCATTACAAGAGCAATCTGCTAA
AAAACGTAAATTTTGTACACCATTCAATGGGAATTCTACGCAGAAAGAAC
AAAATTGTAGTTCTGGAACAAAGTTTCAAACACCTTTCAAAGCAAAGACT
GTTGCCAAGGAAACATTGCATAACGAAGAAAGATATGATACTGATGTTGG
GAATGTTAAGAATGTCATAGTTGGGAACACTCTTCCGGAGGAAAACCGGC
GAATAAACTTACTGTTCAATCTTGGAAAACCTCTAATGAAAAAGATGTCT
CTGCAGAGAAACAATCACGTACACTTACCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008706XLOC_008706Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015579-proteinTCONS_00015579-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015579-exon-sc0000214-1491911889:10039..10525TCONS_00015579-exon-sc0000214-1491911889:10039..10525Clytia hemisphaericaexon
TCONS_00015579-exon-sc0000214-1510915933:10039..10525TCONS_00015579-exon-sc0000214-1510915933:10039..10525Clytia hemisphaericaexon
TCONS_00015579-exon-sc0000214-1575043694:10039..10525TCONS_00015579-exon-sc0000214-1575043694:10039..10525Clytia hemisphaericaexon
TCONS_00015579-exon-sc0000214-1491911889:10748..10769TCONS_00015579-exon-sc0000214-1491911889:10748..10769Clytia hemisphaericaexon
TCONS_00015579-exon-sc0000214-1510915933:10748..10769TCONS_00015579-exon-sc0000214-1510915933:10748..10769Clytia hemisphaericaexon
TCONS_00015579-exon-sc0000214-1575043694:10748..10769TCONS_00015579-exon-sc0000214-1575043694:10748..10769Clytia hemisphaericaexon
TCONS_00015579-exon-sc0000214-1491911889:11019..11040TCONS_00015579-exon-sc0000214-1491911889:11019..11040Clytia hemisphaericaexon
TCONS_00015579-exon-sc0000214-1510915933:11019..11040TCONS_00015579-exon-sc0000214-1510915933:11019..11040Clytia hemisphaericaexon
TCONS_00015579-exon-sc0000214-1575043694:11019..11040TCONS_00015579-exon-sc0000214-1575043694:11019..11040Clytia hemisphaericaexon
TCONS_00015579-exon-sc0000214-1491911889:11251..11308TCONS_00015579-exon-sc0000214-1491911889:11251..11308Clytia hemisphaericaexon
TCONS_00015579-exon-sc0000214-1510915933:11251..11308TCONS_00015579-exon-sc0000214-1510915933:11251..11308Clytia hemisphaericaexon
TCONS_00015579-exon-sc0000214-1575043694:11251..11308TCONS_00015579-exon-sc0000214-1575043694:11251..11308Clytia hemisphaericaexon
TCONS_00015579-exon-sc0000214-1491911889:12531..12673TCONS_00015579-exon-sc0000214-1491911889:12531..12673Clytia hemisphaericaexon
TCONS_00015579-exon-sc0000214-1510915933:12531..12673TCONS_00015579-exon-sc0000214-1510915933:12531..12673Clytia hemisphaericaexon
TCONS_00015579-exon-sc0000214-1575043694:12531..12673TCONS_00015579-exon-sc0000214-1575043694:12531..12673Clytia hemisphaericaexon
TCONS_00015579-exon-sc0000214-1491911889:13484..13531TCONS_00015579-exon-sc0000214-1491911889:13484..13531Clytia hemisphaericaexon
TCONS_00015579-exon-sc0000214-1510915933:13484..13531TCONS_00015579-exon-sc0000214-1510915933:13484..13531Clytia hemisphaericaexon
TCONS_00015579-exon-sc0000214-1575043694:13484..13531TCONS_00015579-exon-sc0000214-1575043694:13484..13531Clytia hemisphaericaexon
TCONS_00015579-exon-sc0000214-1491911889:13667..13797TCONS_00015579-exon-sc0000214-1491911889:13667..13797Clytia hemisphaericaexon
TCONS_00015579-exon-sc0000214-1510915933:13667..13797TCONS_00015579-exon-sc0000214-1510915933:13667..13797Clytia hemisphaericaexon
TCONS_00015579-exon-sc0000214-1575043694:13667..13797TCONS_00015579-exon-sc0000214-1575043694:13667..13797Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000214supercontigsc0000214:10039..13797 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.11511	3.46811	2.47205	2.3225	1.86827	1.29254	2.94936	4.06163	2.92931	3.6612	4.41319	2.60321	2.48829	1.46463	3.86451	4.4052	3.65486	5.32363	2.91104	2.90596	3.15338	2.77751	1.91914	3.41145	6.28722	6.06286	1.43585	1.1155	1.84382	1.21288
Blast
[Close]
BLAST of TCONS_00015579 vs. Swiss-Prot (Human)
Match: RA54B (DNA repair and recombination protein RAD54B OS=Homo sapiens GN=RAD54B PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.291e-26
Identity = 54/87 (62.07%), Postives = 66/87 (75.86%), Query Frame = 2 
Query:  596 VPVVVDPYIALCLRPHQRQGVTFLYECIMGMRSEDCESPTYGAILADEMGLGKTIQCISLIWTLLKQGIY-GRPTVKNVIVVTPNSL 853
            V VV+DPY+   LRPHQ++G+ FLYEC+MGMR     +   GAILADEMGLGKT+QCISLIWTL  QG Y G+P +K  ++VTP SL
Sbjct:  284 VDVVIDPYLVYHLRPHQKEGIIFLYECVMGMRM----NGRCGAILADEMGLGKTLQCISLIWTLQCQGPYGGKPVIKKTLIVTPGSL 366
The following BLAST results are available for this feature:
BLAST of TCONS_00015579 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RA54B5.291e-2662.07DNA repair and recombination protein RAD54B OS=Hom... [more]
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