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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015570 ID=TCONS_00015570|Name=TCONS_00015570|organism=Clytia hemisphaerica|type=transcript|length=1068bp
gtcacgtgatgacttttttttcaaaaaactttttgattttttttggaaaa
tagtgTGAAAAATATTaagggcaaaaaaaattattctaaggCTATAAGAA
TGATAAAGAACAGGATAATGGATTTAAGTCATTAAGTAAGTGGTAATAAA
AAAGCCTATTTTGACCACCGTGTCCATTGCGCTCCCTTTCAGGTCAACGT
TGCGGTGACATTTTAGATGTTGCGATTCTCCTTGATTCATCGGGAACAAT
GCGTGGTGGATATTCACACGCCAAAGAATTCATCAAAACGTTCGCTGATT
ACTACCATTTGGGTCCCAACTCAACGCATATCGGTGTCATCTCATTTAGT
GAAGAAGCGCATCTACATGTACCTTTCAATGCACACCAAGAACATCTATT
ATTCAATGAAGACATCGATCAAATACCATTCTACGGCTATCGCACGCGTC
TCGATCTCGCGTTCAAAATGGCCGACACACGATTATATGGAACCCAATAT
GGTACACGTGATGGGGCTACCAAAATGGTGCTCCTCATCACAGACGGACG
ACAGAACGATGGAGATGTAACAAAAGAGAAACTGAGACTGGCCTCCCAAG
CTTCGCAAGGACTTTTGAACAAGAATGTCAAGATCATAGCAATTGGTTTG
TATGGCGTGGTTGATCCCGATGAGAAAATGCTGACCACTTTGACGGGGTC
GAAAGATAGAGTCCATATTATTACAAAATATGAACAATTATACTCAAATT
CTTTCATAGAAGCGCTCACTGATGACGTGTGTTGAGAGCCTTACACTCAA
ATGAAACTTAAGGATGATTAACATTACGTCGGTGAACCCTTTGGAAAGTG
ATAGTAAATAGCGGTGTACCGCTCATCTATATTGGATTTCAGCACTAACT
TTGACATAAGCTTTTGCACTGCACAAAAATGCCAGGCTCAACcttatcaa
aactttataaagaaataaagaacaatCTAATCCAAGCCCCCTTTTTTAAG
TCATAAAGTATAAAAAACGAATGAAGATAATAACatgcatgttttttata
agaacttcaaaattttcg Run BLAST on NCBI protein sequence of TCONS_00015570-protein >TCONS_00015570-protein ID=TCONS_00015570-protein|Name=TCONS_00015570-protein|organism=Clytia hemisphaerica|type=polypeptide|length=178bp
MRGGYSHAKEFIKTFADYYHLGPNSTHIGVISFSEEAHLHVPFNAHQEHL
LFNEDIDQIPFYGYRTRLDLAFKMADTRLYGTQYGTRDGATKMVLLITDG
RQNDGDVTKEKLRLASQASQGLLNKNVKIIAIGLYGVVDPDEKMLTTLTG
SKDRVHIITKYEQLYSNSFIEALTDDVC Run BLAST on NCBI transcript from alignment at sc0000212:299682..300749 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015570 ID=TCONS_00015570|Name=TCONS_00015570|organism=Clytia hemisphaerica|type=transcript|length=1068bp|location=Sequence derived from alignment at sc0000212:299682..300749 (Clytia hemisphaerica)
cgaaaattttgaagttcttataaaaaacatgcatGTTATTATCTTCATTC
GTTTTTTATACTTTATGACTTAAAAAAGGGGGCTTGGATTAGattgttct
ttatttctttataaagttttgataagGTTGAGCCTGGCATTTTTGTGCAG
TGCAAAAGCTTATGTCAAAGTTAGTGCTGAAATCCAATATAGATGAGCGG
TACACCGCTATTTACTATCACTTTCCAAAGGGTTCACCGACGTAATGTTA
ATCATCCTTAAGTTTCATTTGAGTGTAAGGCTCTCAACACACGTCATCAG
TGAGCGCTTCTATGAAAGAATTTGAGTATAATTGTTCATATTTTGTAATA
ATATGGACTCTATCTTTCGACCCCGTCAAAGTGGTCAGCATTTTCTCATC
GGGATCAACCACGCCATACAAACCAATTGCTATGATCTTGACATTCTTGT
TCAAAAGTCCTTGCGAAGCTTGGGAGGCCAGTCTCAGTTTCTCTTTTGTT
ACATCTCCATCGTTCTGTCGTCCGTCTGTGATGAGGAGCACCATTTTGGT
AGCCCCATCACGTGTACCATATTGGGTTCCATATAATCGTGTGTCGGCCA
TTTTGAACGCGAGATCGAGACGCGTGCGATAGCCGTAGAATGGTATTTGA
TCGATGTCTTCATTGAATAATAGATGTTCTTGGTGTGCATTGAAAGGTAC
ATGTAGATGCGCTTCTTCACTAAATGAGATGACACCGATATGCGTTGAGT
TGGGACCCAAATGGTAGTAATCAGCGAACGTTTTGATGAATTCTTTGGCG
TGTGAATATCCACCACGCATTGTTCCCGATGAATCAAGGAGAATCGCAAC
ATCTAAAATGTCACCGCAACGTTGACCTGAAAGGGAGCGCAATGGACACG
GTGGTCAAAATAGGCTTTTTTATTACCACTTACTTAATGACTTAAATCCA
TTATCCTGTTCTTTATCATTCTTATAGccttagaataattttttttgccc
ttAATATTTTTCAcactattttccaaaaaaaatcaaaaagttttttgaaa
aaaaagtcatcacgtgac Coding sequence (CDS) from alignment at sc0000212:299682..300749 >TCONS_00015570 ID=TCONS_00015570|Name=TCONS_00015570|organism=Clytia hemisphaerica|type=CDS|length=537bp|location=Sequence derived from alignment at sc0000212:299682..300749 (Clytia hemisphaerica)
TCAACACACGTCATCAGTGAGCGCTTCTATGAAAGAATTTGAGTATAATT
GTTCATATTTTGTAATAATATGGACTCTATCTTTCGACCCCGTCAAAGTG
GTCAGCATTTTCTCATCGGGATCAACCACGCCATACAAACCAATTGCTAT
GATCTTGACATTCTTGTTCAAAAGTCCTTGCGAAGCTTGGGAGGCCAGTC
TCAGTTTCTCTTTTGTTACATCTCCATCGTTCTGTCGTCCGTCTGTGATG
AGGAGCACCATTTTGGTAGCCCCATCACGTGTACCATATTGGGTTCCATA
TAATCGTGTGTCGGCCATTTTGAACGCGAGATCGAGACGCGTGCGATAGC
CGTAGAATGGTATTTGATCGATGTCTTCATTGAATAATAGATGTTCTTGG
TGTGCATTGAAAGGTACATGTAGATGCGCTTCTTCACTAAATGAGATGAC
ACCGATATGCGTTGAGTTGGGACCCAAATGGTAGTAATCAGCGAACGTTT
TGATGAATTCTTTGGCGTGTGAATATCCACCACGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015570-exon-sc0000212-1491911889:299682..300749 | TCONS_00015570-exon-sc0000212-1491911889:299682..300749 | Clytia hemisphaerica | exon |
| TCONS_00015570-exon-sc0000212-1510915933:299682..300749 | TCONS_00015570-exon-sc0000212-1510915933:299682..300749 | Clytia hemisphaerica | exon |
| TCONS_00015570-exon-sc0000212-1575043694:299682..300749 | TCONS_00015570-exon-sc0000212-1575043694:299682..300749 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000212 | supercontig | sc0000212:299682..300749 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002035 | VWF_A |
Blast
The following BLAST results are available for this feature:
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