TCONS_00015566 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015566
Unique NameTCONS_00015566
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length317

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015566 ID=TCONS_00015566|Name=TCONS_00015566|organism=Clytia hemisphaerica|type=transcript|length=317bp
CCTGATTCTAGTAAACCAAAACCTGACTGCATAGTGAAGATGATGAAAGT
TGCCATCATTACCCATAATGCATCGACAGCCTCACTCCCAGGATCCCCTC
CAAAAGGACTTTCAACAGTAACATTCGTCATGATTCTTTATGTGTTGATT
ATTTTTCTCTGATGTGAGATATTCAAAGAATAAGTATCTTATATCCCTCG
TCGGTCAAAAATCTTCTACCACCGactaacaaaaaaaatcacgatGAATT
AGGCTTTTATACTAATGAGAAGCAGAAAGAAAGACACAATCAATTGCAGA
TTGGTATGTATTGTTTC
Run BLAST on NCBI

transcript from alignment at sc0000212:271353..271669

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015566 ID=TCONS_00015566|Name=TCONS_00015566|organism=Clytia hemisphaerica|type=transcript|length=317bp|location=Sequence derived from alignment at sc0000212:271353..271669 (Clytia hemisphaerica)
GAAACAATACATACCAATCTGCAATTGATTGTGTCTTTCTTTCTGCTTCT
CATTAGTATAAAAGCCTAATTCatcgtgattttttttgttagtCGGTGGT
AGAAGATTTTTGACCGACGAGGGATATAAGATACTTATTCTTTGAATATC
TCACATCAGAGAAAAATAATCAACACATAAAGAATCATGACGAATGTTAC
TGTTGAAAGTCCTTTTGGAGGGGATCCTGGGAGTGAGGCTGTCGATGCAT
TATGGGTAATGATGGCAACTTTCATCATCTTCACTATGCAGTCAGGTTTT
GGTTTACTAGAATCAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008693XLOC_008693Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015566-exon-sc0000212-1491911889:271353..271669TCONS_00015566-exon-sc0000212-1491911889:271353..271669Clytia hemisphaericaexon
TCONS_00015566-exon-sc0000212-1510915933:271353..271669TCONS_00015566-exon-sc0000212-1510915933:271353..271669Clytia hemisphaericaexon
TCONS_00015566-exon-sc0000212-1575043694:271353..271669TCONS_00015566-exon-sc0000212-1575043694:271353..271669Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000212supercontigsc0000212:271353..271669 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.1082	16.9748	57.2687	81.496	0.885835	0.349999	3.37807	2.7672	2.21415	1.37129	0	1.96864	28.6149	30.6242	8.20592	15.2107	5.67082	16.9318	13.6164	18.6327	0	0	4.51897	3.0813	0	0	15.312	7.20945	1.45816	1.48564
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015566 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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